Doublet info:
Details
Nucleotide types:
AC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1KD3:A6:B3
Extra
PDB:
ATOM 1 O3' C A 5 11.829 -12.790 87.618 1.00 30.07 O
ATOM 2 P A A 6 12.821 -14.045 87.652 1.00 30.65 P
ATOM 3 OP1 A A 6 12.501 -14.829 88.873 1.00 32.31 O
ATOM 4 OP2 A A 6 14.208 -13.577 87.420 1.00 30.42 O
ATOM 5 O5' A A 6 12.363 -14.873 86.372 1.00 30.49 O
ATOM 6 C5' A A 6 13.306 -15.549 85.562 1.00 26.30 C
ATOM 7 C4' A A 6 12.644 -16.042 84.299 1.00 24.69 C
ATOM 8 O4' A A 6 12.381 -14.920 83.412 1.00 23.43 O
ATOM 9 C3' A A 6 13.525 -16.970 83.483 1.00 23.16 C
ATOM 10 O3' A A 6 13.355 -18.293 83.956 1.00 23.14 O
ATOM 11 C2' A A 6 12.987 -16.781 82.073 1.00 23.29 C
ATOM 12 O2' A A 6 11.789 -17.497 81.860 1.00 22.61 O
ATOM 13 C1' A A 6 12.693 -15.281 82.074 1.00 21.84 C
ATOM 14 N9 A A 6 13.830 -14.469 81.642 1.00 21.46 N
ATOM 15 C8 A A 6 14.486 -13.495 82.358 1.00 21.14 C
ATOM 16 N7 A A 6 15.471 -12.930 81.704 1.00 20.81 N
ATOM 17 C5 A A 6 15.463 -13.568 80.474 1.00 18.11 C
ATOM 18 C6 A A 6 16.262 -13.419 79.326 1.00 19.76 C
ATOM 19 N6 A A 6 17.248 -12.523 79.220 1.00 21.06 N
ATOM 20 N1 A A 6 16.003 -14.227 78.272 1.00 18.07 N
ATOM 21 C2 A A 6 14.999 -15.107 78.371 1.00 18.47 C
ATOM 22 N3 A A 6 14.171 -15.333 79.391 1.00 17.96 N
ATOM 23 C4 A A 6 14.461 -14.523 80.423 1.00 19.32 C
ATOM 24 P G A 7 14.644 -19.173 84.306 1.00 22.88 P
ATOM 25 OP1 G A 7 14.146 -20.502 84.750 1.00 22.93 O
ATOM 26 OP2 G A 7 15.537 -18.385 85.195 1.00 20.10 O
ATOM 27 O5' G A 7 15.367 -19.332 82.899 1.00 22.92 O
TER
ATOM 1 O3' U B 2 25.488 -9.005 78.020 1.00 25.28 O
ATOM 2 P C B 3 24.601 -7.760 77.525 1.00 25.41 P
ATOM 3 OP1 C B 3 25.083 -7.378 76.175 1.00 25.17 O
ATOM 4 OP2 C B 3 24.578 -6.754 78.610 1.00 23.96 O
ATOM 5 O5' C B 3 23.133 -8.359 77.384 1.00 25.24 O
ATOM 6 C5' C B 3 22.864 -9.423 76.479 1.00 23.84 C
ATOM 7 C4' C B 3 21.490 -9.991 76.738 1.00 23.43 C
ATOM 8 O4' C B 3 21.454 -10.587 78.062 1.00 21.31 O
ATOM 9 C3' C B 3 20.354 -8.982 76.761 1.00 23.20 C
ATOM 10 O3' C B 3 19.910 -8.677 75.445 1.00 26.14 O
ATOM 11 C2' C B 3 19.304 -9.723 77.573 1.00 22.75 C
ATOM 12 O2' C B 3 18.662 -10.734 76.824 1.00 21.25 O
ATOM 13 C1' C B 3 20.178 -10.382 78.643 1.00 21.82 C
ATOM 14 N1 C B 3 20.345 -9.543 79.842 1.00 21.55 N
ATOM 15 C2 C B 3 19.348 -9.562 80.819 1.00 21.32 C
ATOM 16 O2 C B 3 18.356 -10.285 80.648 1.00 23.35 O
ATOM 17 N3 C B 3 19.488 -8.795 81.924 1.00 22.21 N
ATOM 18 C4 C B 3 20.571 -8.031 82.073 1.00 22.03 C
ATOM 19 N4 C B 3 20.668 -7.295 83.188 1.00 23.26 N
ATOM 20 C5 C B 3 21.604 -7.990 81.091 1.00 23.10 C
ATOM 21 C6 C B 3 21.452 -8.756 80.000 1.00 22.28 C
ATOM 22 P A B 4 18.960 -7.404 75.204 1.00 30.12 P
ATOM 23 OP1 A B 4 18.933 -7.138 73.743 1.00 29.99 O
ATOM 24 OP2 A B 4 19.332 -6.318 76.140 1.00 29.90 O
ATOM 25 O5' A B 4 17.525 -7.940 75.625 1.00 27.40 O
TER
ATOM 2 P A A 6 12.821 -14.045 87.652 1.00 30.65 P
ATOM 3 OP1 A A 6 12.501 -14.829 88.873 1.00 32.31 O
ATOM 4 OP2 A A 6 14.208 -13.577 87.420 1.00 30.42 O
ATOM 5 O5' A A 6 12.363 -14.873 86.372 1.00 30.49 O
ATOM 6 C5' A A 6 13.306 -15.549 85.562 1.00 26.30 C
ATOM 7 C4' A A 6 12.644 -16.042 84.299 1.00 24.69 C
ATOM 8 O4' A A 6 12.381 -14.920 83.412 1.00 23.43 O
ATOM 9 C3' A A 6 13.525 -16.970 83.483 1.00 23.16 C
ATOM 10 O3' A A 6 13.355 -18.293 83.956 1.00 23.14 O
ATOM 11 C2' A A 6 12.987 -16.781 82.073 1.00 23.29 C
ATOM 12 O2' A A 6 11.789 -17.497 81.860 1.00 22.61 O
ATOM 13 C1' A A 6 12.693 -15.281 82.074 1.00 21.84 C
ATOM 14 N9 A A 6 13.830 -14.469 81.642 1.00 21.46 N
ATOM 15 C8 A A 6 14.486 -13.495 82.358 1.00 21.14 C
ATOM 16 N7 A A 6 15.471 -12.930 81.704 1.00 20.81 N
ATOM 17 C5 A A 6 15.463 -13.568 80.474 1.00 18.11 C
ATOM 18 C6 A A 6 16.262 -13.419 79.326 1.00 19.76 C
ATOM 19 N6 A A 6 17.248 -12.523 79.220 1.00 21.06 N
ATOM 20 N1 A A 6 16.003 -14.227 78.272 1.00 18.07 N
ATOM 21 C2 A A 6 14.999 -15.107 78.371 1.00 18.47 C
ATOM 22 N3 A A 6 14.171 -15.333 79.391 1.00 17.96 N
ATOM 23 C4 A A 6 14.461 -14.523 80.423 1.00 19.32 C
ATOM 24 P G A 7 14.644 -19.173 84.306 1.00 22.88 P
ATOM 25 OP1 G A 7 14.146 -20.502 84.750 1.00 22.93 O
ATOM 26 OP2 G A 7 15.537 -18.385 85.195 1.00 20.10 O
ATOM 27 O5' G A 7 15.367 -19.332 82.899 1.00 22.92 O
TER
ATOM 1 O3' U B 2 25.488 -9.005 78.020 1.00 25.28 O
ATOM 2 P C B 3 24.601 -7.760 77.525 1.00 25.41 P
ATOM 3 OP1 C B 3 25.083 -7.378 76.175 1.00 25.17 O
ATOM 4 OP2 C B 3 24.578 -6.754 78.610 1.00 23.96 O
ATOM 5 O5' C B 3 23.133 -8.359 77.384 1.00 25.24 O
ATOM 6 C5' C B 3 22.864 -9.423 76.479 1.00 23.84 C
ATOM 7 C4' C B 3 21.490 -9.991 76.738 1.00 23.43 C
ATOM 8 O4' C B 3 21.454 -10.587 78.062 1.00 21.31 O
ATOM 9 C3' C B 3 20.354 -8.982 76.761 1.00 23.20 C
ATOM 10 O3' C B 3 19.910 -8.677 75.445 1.00 26.14 O
ATOM 11 C2' C B 3 19.304 -9.723 77.573 1.00 22.75 C
ATOM 12 O2' C B 3 18.662 -10.734 76.824 1.00 21.25 O
ATOM 13 C1' C B 3 20.178 -10.382 78.643 1.00 21.82 C
ATOM 14 N1 C B 3 20.345 -9.543 79.842 1.00 21.55 N
ATOM 15 C2 C B 3 19.348 -9.562 80.819 1.00 21.32 C
ATOM 16 O2 C B 3 18.356 -10.285 80.648 1.00 23.35 O
ATOM 17 N3 C B 3 19.488 -8.795 81.924 1.00 22.21 N
ATOM 18 C4 C B 3 20.571 -8.031 82.073 1.00 22.03 C
ATOM 19 N4 C B 3 20.668 -7.295 83.188 1.00 23.26 N
ATOM 20 C5 C B 3 21.604 -7.990 81.091 1.00 23.10 C
ATOM 21 C6 C B 3 21.452 -8.756 80.000 1.00 22.28 C
ATOM 22 P A B 4 18.960 -7.404 75.204 1.00 30.12 P
ATOM 23 OP1 A B 4 18.933 -7.138 73.743 1.00 29.99 O
ATOM 24 OP2 A B 4 19.332 -6.318 76.140 1.00 29.90 O
ATOM 25 O5' A B 4 17.525 -7.940 75.625 1.00 27.40 O
TER
Atoms:
OP1: (12.501,-14.829,88.873)
OP2: (14.208,-13.577,87.420)
C3': (13.525,-16.970,83.483)
C1': (12.693,-15.281,82.074)
C5': (13.306,-15.549,85.562)
O4': (12.381,-14.920,83.412)
C8: (14.486,-13.495,82.358)
O2': (11.789,-17.497,81.860)
C6: (16.262,-13.419,79.326)
C5: (15.463,-13.568,80.474)
C4: (14.461,-14.523,80.423)
P: (12.821,-14.045,87.652)
C4': (12.644,-16.042,84.299)
C2': (12.987,-16.781,82.073)
C2: (14.999,-15.107,78.371)
N1: (16.003,-14.227,78.272)
N3: (14.171,-15.333,79.391)
N6: (17.248,-12.523,79.220)
N7: (15.471,-12.930,81.704)
N9: (13.830,-14.469,81.642)
O5': (12.363,-14.873,86.372)
O3': (13.355,-18.293,83.956)
OP2: (14.208,-13.577,87.420)
C3': (13.525,-16.970,83.483)
C1': (12.693,-15.281,82.074)
C5': (13.306,-15.549,85.562)
O4': (12.381,-14.920,83.412)
C8: (14.486,-13.495,82.358)
O2': (11.789,-17.497,81.860)
C6: (16.262,-13.419,79.326)
C5: (15.463,-13.568,80.474)
C4: (14.461,-14.523,80.423)
P: (12.821,-14.045,87.652)
C4': (12.644,-16.042,84.299)
C2': (12.987,-16.781,82.073)
C2: (14.999,-15.107,78.371)
N1: (16.003,-14.227,78.272)
N3: (14.171,-15.333,79.391)
N6: (17.248,-12.523,79.220)
N7: (15.471,-12.930,81.704)
N9: (13.830,-14.469,81.642)
O5': (12.363,-14.873,86.372)
O3': (13.355,-18.293,83.956)
C2: (19.348,-9.562,80.819)
OP1: (25.083,-7.378,76.175)
OP2: (24.578,-6.754,78.610)
C4: (20.571,-8.031,82.073)
O5': (23.133,-8.359,77.384)
C3': (20.354,-8.982,76.761)
C1': (20.178,-10.382,78.643)
O4': (21.454,-10.587,78.062)
C5': (22.864,-9.423,76.479)
P: (24.601,-7.760,77.525)
O2: (18.356,-10.285,80.648)
C4': (21.490,-9.991,76.738)
C2': (19.304,-9.723,77.573)
O2': (18.662,-10.734,76.824)
N1: (20.345,-9.543,79.842)
N3: (19.488,-8.795,81.924)
N4: (20.668,-7.295,83.188)
C6: (21.452,-8.756,80.000)
C5: (21.604,-7.990,81.091)
O3': (19.910,-8.677,75.445)
OP1: (25.083,-7.378,76.175)
OP2: (24.578,-6.754,78.610)
C4: (20.571,-8.031,82.073)
O5': (23.133,-8.359,77.384)
C3': (20.354,-8.982,76.761)
C1': (20.178,-10.382,78.643)
O4': (21.454,-10.587,78.062)
C5': (22.864,-9.423,76.479)
P: (24.601,-7.760,77.525)
O2: (18.356,-10.285,80.648)
C4': (21.490,-9.991,76.738)
C2': (19.304,-9.723,77.573)
O2': (18.662,-10.734,76.824)
N1: (20.345,-9.543,79.842)
N3: (19.488,-8.795,81.924)
N4: (20.668,-7.295,83.188)
C6: (21.452,-8.756,80.000)
C5: (21.604,-7.990,81.091)
O3': (19.910,-8.677,75.445)
Image (generated by PyMOL):