Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3NDB:M20:M112
Extra
PDB:
ATOM 1 O3' G A 19 -26.175 29.223 -86.439 1.00 81.01 O
ATOM 2 P G A 20 -26.812 28.985 -84.986 1.00 77.56 P
ATOM 3 OP1 G A 20 -25.713 28.592 -84.071 1.00 80.04 O
ATOM 4 OP2 G A 20 -28.048 28.172 -85.115 1.00 75.66 O
ATOM 5 O5' G A 20 -27.280 30.460 -84.579 1.00 74.68 O
ATOM 6 C5' G A 20 -26.593 31.605 -85.073 1.00 74.56 C
ATOM 7 C4' G A 20 -27.607 32.688 -85.362 1.00 72.74 C
ATOM 8 O4' G A 20 -28.540 32.175 -86.324 1.00 69.60 O
ATOM 9 C3' G A 20 -28.601 32.989 -84.252 1.00 73.41 C
ATOM 10 O3' G A 20 -27.969 33.695 -83.151 1.00 75.79 O
ATOM 11 C2' G A 20 -29.653 33.779 -85.038 1.00 71.10 C
ATOM 12 O2' G A 20 -29.168 35.020 -85.523 1.00 75.88 O
ATOM 13 C1' G A 20 -29.758 32.900 -86.263 1.00 66.35 C
ATOM 14 N9 G A 20 -30.862 31.949 -86.368 1.00 64.60 N
ATOM 15 C8 G A 20 -30.732 30.579 -86.444 1.00 64.41 C
ATOM 16 N7 G A 20 -31.866 29.945 -86.571 1.00 64.21 N
ATOM 17 C5 G A 20 -32.808 30.956 -86.595 1.00 63.36 C
ATOM 18 C6 G A 20 -34.215 30.841 -86.719 1.00 64.85 C
ATOM 19 O6 G A 20 -34.909 29.788 -86.818 1.00 64.71 O
ATOM 20 N1 G A 20 -34.788 32.117 -86.716 1.00 64.50 N
ATOM 21 C2 G A 20 -34.092 33.300 -86.591 1.00 64.02 C
ATOM 22 N2 G A 20 -34.819 34.423 -86.607 1.00 65.50 N
ATOM 23 N3 G A 20 -32.783 33.398 -86.467 1.00 62.51 N
ATOM 24 C4 G A 20 -32.210 32.192 -86.479 1.00 62.73 C
ATOM 25 P C A 21 -28.381 33.294 -81.652 1.00 74.78 P
ATOM 26 OP1 C A 21 -27.499 34.121 -80.797 1.00 74.64 O
ATOM 27 OP2 C A 21 -28.505 31.817 -81.471 1.00 72.19 O
ATOM 28 O5' C A 21 -29.870 33.848 -81.598 1.00 71.22 O
TER
ATOM 1 O3' G B 111 -44.514 29.367 -86.645 1.00 97.28 O
ATOM 2 P U B 112 -44.205 29.756 -88.166 1.00 97.83 P
ATOM 3 OP1 U B 112 -45.431 30.303 -88.794 1.00 99.40 O
ATOM 4 OP2 U B 112 -43.486 28.567 -88.702 1.00 97.17 O
ATOM 5 O5' U B 112 -43.145 30.952 -88.062 1.00 93.10 O
ATOM 6 C5' U B 112 -43.557 32.269 -87.728 1.00 92.91 C
ATOM 7 C4' U B 112 -42.324 33.089 -87.416 1.00 88.82 C
ATOM 8 O4' U B 112 -41.453 32.241 -86.629 1.00 85.16 O
ATOM 9 C3' U B 112 -41.446 33.395 -88.621 1.00 87.32 C
ATOM 10 O3' U B 112 -41.929 34.486 -89.433 1.00 90.74 O
ATOM 11 C2' U B 112 -40.047 33.582 -88.000 1.00 82.48 C
ATOM 12 O2' U B 112 -39.776 34.831 -87.395 1.00 82.43 O
ATOM 13 C1' U B 112 -40.084 32.549 -86.893 1.00 78.72 C
ATOM 14 N1 U B 112 -39.281 31.312 -87.102 1.00 74.35 N
ATOM 15 C2 U B 112 -37.917 31.411 -87.018 1.00 72.32 C
ATOM 16 O2 U B 112 -37.338 32.478 -86.820 1.00 71.24 O
ATOM 17 N3 U B 112 -37.269 30.201 -87.189 1.00 71.64 N
ATOM 18 C4 U B 112 -37.828 28.947 -87.439 1.00 73.53 C
ATOM 19 O4 U B 112 -37.111 27.950 -87.569 1.00 74.10 O
ATOM 20 C5 U B 112 -39.254 28.948 -87.512 1.00 73.97 C
ATOM 21 C6 U B 112 -39.898 30.103 -87.337 1.00 74.76 C
ATOM 22 P C B 113 -41.544 34.512 -90.958 1.00 98.70 P
ATOM 23 OP1 C B 113 -42.302 35.627 -91.583 1.00100.17 O
ATOM 24 OP2 C B 113 -41.692 33.120 -91.459 1.00 96.73 O
ATOM 25 O5' C B 113 -39.963 34.871 -90.975 1.00 95.47 O
TER
ATOM 2 P G A 20 -26.812 28.985 -84.986 1.00 77.56 P
ATOM 3 OP1 G A 20 -25.713 28.592 -84.071 1.00 80.04 O
ATOM 4 OP2 G A 20 -28.048 28.172 -85.115 1.00 75.66 O
ATOM 5 O5' G A 20 -27.280 30.460 -84.579 1.00 74.68 O
ATOM 6 C5' G A 20 -26.593 31.605 -85.073 1.00 74.56 C
ATOM 7 C4' G A 20 -27.607 32.688 -85.362 1.00 72.74 C
ATOM 8 O4' G A 20 -28.540 32.175 -86.324 1.00 69.60 O
ATOM 9 C3' G A 20 -28.601 32.989 -84.252 1.00 73.41 C
ATOM 10 O3' G A 20 -27.969 33.695 -83.151 1.00 75.79 O
ATOM 11 C2' G A 20 -29.653 33.779 -85.038 1.00 71.10 C
ATOM 12 O2' G A 20 -29.168 35.020 -85.523 1.00 75.88 O
ATOM 13 C1' G A 20 -29.758 32.900 -86.263 1.00 66.35 C
ATOM 14 N9 G A 20 -30.862 31.949 -86.368 1.00 64.60 N
ATOM 15 C8 G A 20 -30.732 30.579 -86.444 1.00 64.41 C
ATOM 16 N7 G A 20 -31.866 29.945 -86.571 1.00 64.21 N
ATOM 17 C5 G A 20 -32.808 30.956 -86.595 1.00 63.36 C
ATOM 18 C6 G A 20 -34.215 30.841 -86.719 1.00 64.85 C
ATOM 19 O6 G A 20 -34.909 29.788 -86.818 1.00 64.71 O
ATOM 20 N1 G A 20 -34.788 32.117 -86.716 1.00 64.50 N
ATOM 21 C2 G A 20 -34.092 33.300 -86.591 1.00 64.02 C
ATOM 22 N2 G A 20 -34.819 34.423 -86.607 1.00 65.50 N
ATOM 23 N3 G A 20 -32.783 33.398 -86.467 1.00 62.51 N
ATOM 24 C4 G A 20 -32.210 32.192 -86.479 1.00 62.73 C
ATOM 25 P C A 21 -28.381 33.294 -81.652 1.00 74.78 P
ATOM 26 OP1 C A 21 -27.499 34.121 -80.797 1.00 74.64 O
ATOM 27 OP2 C A 21 -28.505 31.817 -81.471 1.00 72.19 O
ATOM 28 O5' C A 21 -29.870 33.848 -81.598 1.00 71.22 O
TER
ATOM 1 O3' G B 111 -44.514 29.367 -86.645 1.00 97.28 O
ATOM 2 P U B 112 -44.205 29.756 -88.166 1.00 97.83 P
ATOM 3 OP1 U B 112 -45.431 30.303 -88.794 1.00 99.40 O
ATOM 4 OP2 U B 112 -43.486 28.567 -88.702 1.00 97.17 O
ATOM 5 O5' U B 112 -43.145 30.952 -88.062 1.00 93.10 O
ATOM 6 C5' U B 112 -43.557 32.269 -87.728 1.00 92.91 C
ATOM 7 C4' U B 112 -42.324 33.089 -87.416 1.00 88.82 C
ATOM 8 O4' U B 112 -41.453 32.241 -86.629 1.00 85.16 O
ATOM 9 C3' U B 112 -41.446 33.395 -88.621 1.00 87.32 C
ATOM 10 O3' U B 112 -41.929 34.486 -89.433 1.00 90.74 O
ATOM 11 C2' U B 112 -40.047 33.582 -88.000 1.00 82.48 C
ATOM 12 O2' U B 112 -39.776 34.831 -87.395 1.00 82.43 O
ATOM 13 C1' U B 112 -40.084 32.549 -86.893 1.00 78.72 C
ATOM 14 N1 U B 112 -39.281 31.312 -87.102 1.00 74.35 N
ATOM 15 C2 U B 112 -37.917 31.411 -87.018 1.00 72.32 C
ATOM 16 O2 U B 112 -37.338 32.478 -86.820 1.00 71.24 O
ATOM 17 N3 U B 112 -37.269 30.201 -87.189 1.00 71.64 N
ATOM 18 C4 U B 112 -37.828 28.947 -87.439 1.00 73.53 C
ATOM 19 O4 U B 112 -37.111 27.950 -87.569 1.00 74.10 O
ATOM 20 C5 U B 112 -39.254 28.948 -87.512 1.00 73.97 C
ATOM 21 C6 U B 112 -39.898 30.103 -87.337 1.00 74.76 C
ATOM 22 P C B 113 -41.544 34.512 -90.958 1.00 98.70 P
ATOM 23 OP1 C B 113 -42.302 35.627 -91.583 1.00100.17 O
ATOM 24 OP2 C B 113 -41.692 33.120 -91.459 1.00 96.73 O
ATOM 25 O5' C B 113 -39.963 34.871 -90.975 1.00 95.47 O
TER
Atoms:
OP1: (-25.713,28.592,-84.071)
OP2: (-28.048,28.172,-85.115)
C3': (-28.601,32.989,-84.252)
C1': (-29.758,32.900,-86.263)
C5': (-26.593,31.605,-85.073)
O6: (-34.909,29.788,-86.818)
O4': (-28.540,32.175,-86.324)
C8: (-30.732,30.579,-86.444)
C2: (-34.092,33.300,-86.591)
C6: (-34.215,30.841,-86.719)
C5: (-32.808,30.956,-86.595)
C4: (-32.210,32.192,-86.479)
P: (-26.812,28.985,-84.986)
C4': (-27.607,32.688,-85.362)
C2': (-29.653,33.779,-85.038)
O2': (-29.168,35.020,-85.523)
N1: (-34.788,32.117,-86.716)
N2: (-34.819,34.423,-86.607)
N3: (-32.783,33.398,-86.467)
N7: (-31.866,29.945,-86.571)
N9: (-30.862,31.949,-86.368)
O5': (-27.280,30.460,-84.579)
O3': (-27.969,33.695,-83.151)
OP2: (-28.048,28.172,-85.115)
C3': (-28.601,32.989,-84.252)
C1': (-29.758,32.900,-86.263)
C5': (-26.593,31.605,-85.073)
O6: (-34.909,29.788,-86.818)
O4': (-28.540,32.175,-86.324)
C8: (-30.732,30.579,-86.444)
C2: (-34.092,33.300,-86.591)
C6: (-34.215,30.841,-86.719)
C5: (-32.808,30.956,-86.595)
C4: (-32.210,32.192,-86.479)
P: (-26.812,28.985,-84.986)
C4': (-27.607,32.688,-85.362)
C2': (-29.653,33.779,-85.038)
O2': (-29.168,35.020,-85.523)
N1: (-34.788,32.117,-86.716)
N2: (-34.819,34.423,-86.607)
N3: (-32.783,33.398,-86.467)
N7: (-31.866,29.945,-86.571)
N9: (-30.862,31.949,-86.368)
O5': (-27.280,30.460,-84.579)
O3': (-27.969,33.695,-83.151)
C4: (-37.828,28.947,-87.439)
N3: (-37.269,30.201,-87.189)
OP1: (-45.431,30.303,-88.794)
OP2: (-43.486,28.567,-88.702)
C2: (-37.917,31.411,-87.018)
C1': (-40.084,32.549,-86.893)
C3': (-41.446,33.395,-88.621)
O5': (-43.145,30.952,-88.062)
O4': (-41.453,32.241,-86.629)
C5': (-43.557,32.269,-87.728)
P: (-44.205,29.756,-88.166)
C4': (-42.324,33.089,-87.416)
C2': (-40.047,33.582,-88.000)
O2': (-39.776,34.831,-87.395)
N1: (-39.281,31.312,-87.102)
O4: (-37.111,27.950,-87.569)
O2: (-37.338,32.478,-86.820)
C6: (-39.898,30.103,-87.337)
C5: (-39.254,28.948,-87.512)
O3': (-41.929,34.486,-89.433)
N3: (-37.269,30.201,-87.189)
OP1: (-45.431,30.303,-88.794)
OP2: (-43.486,28.567,-88.702)
C2: (-37.917,31.411,-87.018)
C1': (-40.084,32.549,-86.893)
C3': (-41.446,33.395,-88.621)
O5': (-43.145,30.952,-88.062)
O4': (-41.453,32.241,-86.629)
C5': (-43.557,32.269,-87.728)
P: (-44.205,29.756,-88.166)
C4': (-42.324,33.089,-87.416)
C2': (-40.047,33.582,-88.000)
O2': (-39.776,34.831,-87.395)
N1: (-39.281,31.312,-87.102)
O4: (-37.111,27.950,-87.569)
O2: (-37.338,32.478,-86.820)
C6: (-39.898,30.103,-87.337)
C5: (-39.254,28.948,-87.512)
O3': (-41.929,34.486,-89.433)
Image (generated by PyMOL):