Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:1935:11002
Extra
PDB:
ATOM 1 O3' U A 934 46.714 -57.863 25.663 1.00 53.63 O
ATOM 2 P G A 935 45.176 -57.413 25.698 1.00 54.97 P
ATOM 3 OP1 G A 935 44.369 -58.658 25.575 1.00 55.41 O
ATOM 4 OP2 G A 935 44.995 -56.339 24.685 1.00 54.90 O
ATOM 5 O5' G A 935 45.051 -56.829 27.163 1.00 54.40 O
ATOM 6 C5' G A 935 43.917 -56.130 27.607 1.00 54.07 C
ATOM 7 C4' G A 935 44.070 -55.840 29.062 1.00 53.62 C
ATOM 8 O4' G A 935 45.340 -55.158 29.294 1.00 53.35 O
ATOM 9 C3' G A 935 43.045 -54.936 29.679 1.00 53.20 C
ATOM 10 O3' G A 935 41.839 -55.619 29.970 1.00 53.35 O
ATOM 11 C2' G A 935 43.795 -54.433 30.921 1.00 52.75 C
ATOM 12 O2' G A 935 43.845 -55.434 31.920 1.00 52.82 O
ATOM 13 C1' G A 935 45.213 -54.268 30.375 1.00 52.83 C
ATOM 14 N9 G A 935 45.490 -52.880 29.906 1.00 52.53 N
ATOM 15 C8 G A 935 45.908 -52.427 28.677 1.00 52.69 C
ATOM 16 N7 G A 935 46.062 -51.130 28.617 1.00 52.34 N
ATOM 17 C5 G A 935 45.733 -50.702 29.886 1.00 51.92 C
ATOM 18 C6 G A 935 45.710 -49.417 30.458 1.00 51.43 C
ATOM 19 O6 G A 935 45.975 -48.333 29.952 1.00 51.26 O
ATOM 20 N1 G A 935 45.317 -49.409 31.765 1.00 51.13 N
ATOM 21 C2 G A 935 45.014 -50.508 32.470 1.00 51.27 C
ATOM 22 N2 G A 935 44.691 -50.303 33.751 1.00 50.93 N
ATOM 23 N3 G A 935 45.038 -51.711 31.977 1.00 51.71 N
ATOM 24 C4 G A 935 45.388 -51.745 30.685 1.00 52.02 C
ATOM 25 P A A 936 40.412 -55.051 29.463 1.00 47.11 P
ATOM 26 OP1 A A 936 39.459 -56.177 29.508 1.00 47.46 O
ATOM 27 OP2 A A 936 40.645 -54.352 28.175 1.00 47.21 O
ATOM 28 O5' A A 936 40.032 -53.991 30.573 1.00 46.53 O
TER
ATOM 1 O3' A B1001 47.593 -39.216 33.954 1.00 44.70 O
ATOM 2 P U B1002 48.836 -40.179 34.020 1.00 43.45 P
ATOM 3 OP1 U B1002 49.698 -39.602 35.083 1.00 43.14 O
ATOM 4 OP2 U B1002 49.383 -40.324 32.648 1.00 43.78 O
ATOM 5 O5' U B1002 48.197 -41.588 34.497 1.00 43.65 O
ATOM 6 C5' U B1002 47.327 -41.681 35.638 1.00 43.43 C
ATOM 7 C4' U B1002 46.607 -43.024 35.725 1.00 43.71 C
ATOM 8 O4' U B1002 45.634 -43.128 34.668 1.00 43.94 O
ATOM 9 C3' U B1002 47.444 -44.287 35.551 1.00 44.04 C
ATOM 10 O3' U B1002 48.092 -44.680 36.726 1.00 43.92 O
ATOM 11 C2' U B1002 46.402 -45.290 35.132 1.00 44.35 C
ATOM 12 O2' U B1002 45.608 -45.644 36.243 1.00 44.21 O
ATOM 13 C1' U B1002 45.550 -44.457 34.210 1.00 44.34 C
ATOM 14 N1 U B1002 46.050 -44.506 32.861 1.00 44.64 N
ATOM 15 C2 U B1002 46.004 -45.690 32.185 1.00 45.07 C
ATOM 16 O2 U B1002 45.544 -46.715 32.625 1.00 45.23 O
ATOM 17 N3 U B1002 46.512 -45.689 30.921 1.00 45.36 N
ATOM 18 C4 U B1002 47.052 -44.618 30.271 1.00 45.25 C
ATOM 19 O4 U B1002 47.473 -44.757 29.125 1.00 45.56 O
ATOM 20 C5 U B1002 47.036 -43.418 31.053 1.00 44.79 C
ATOM 21 C6 U B1002 46.555 -43.398 32.290 1.00 44.51 C
ATOM 22 P G B1003 49.502 -45.413 36.655 1.00 42.70 P
ATOM 23 OP1 G B1003 50.258 -44.973 37.854 1.00 42.39 O
ATOM 24 OP2 G B1003 50.059 -45.147 35.305 1.00 42.91 O
ATOM 25 O5' G B1003 49.149 -46.972 36.770 1.00 43.06 O
TER
ATOM 2 P G A 935 45.176 -57.413 25.698 1.00 54.97 P
ATOM 3 OP1 G A 935 44.369 -58.658 25.575 1.00 55.41 O
ATOM 4 OP2 G A 935 44.995 -56.339 24.685 1.00 54.90 O
ATOM 5 O5' G A 935 45.051 -56.829 27.163 1.00 54.40 O
ATOM 6 C5' G A 935 43.917 -56.130 27.607 1.00 54.07 C
ATOM 7 C4' G A 935 44.070 -55.840 29.062 1.00 53.62 C
ATOM 8 O4' G A 935 45.340 -55.158 29.294 1.00 53.35 O
ATOM 9 C3' G A 935 43.045 -54.936 29.679 1.00 53.20 C
ATOM 10 O3' G A 935 41.839 -55.619 29.970 1.00 53.35 O
ATOM 11 C2' G A 935 43.795 -54.433 30.921 1.00 52.75 C
ATOM 12 O2' G A 935 43.845 -55.434 31.920 1.00 52.82 O
ATOM 13 C1' G A 935 45.213 -54.268 30.375 1.00 52.83 C
ATOM 14 N9 G A 935 45.490 -52.880 29.906 1.00 52.53 N
ATOM 15 C8 G A 935 45.908 -52.427 28.677 1.00 52.69 C
ATOM 16 N7 G A 935 46.062 -51.130 28.617 1.00 52.34 N
ATOM 17 C5 G A 935 45.733 -50.702 29.886 1.00 51.92 C
ATOM 18 C6 G A 935 45.710 -49.417 30.458 1.00 51.43 C
ATOM 19 O6 G A 935 45.975 -48.333 29.952 1.00 51.26 O
ATOM 20 N1 G A 935 45.317 -49.409 31.765 1.00 51.13 N
ATOM 21 C2 G A 935 45.014 -50.508 32.470 1.00 51.27 C
ATOM 22 N2 G A 935 44.691 -50.303 33.751 1.00 50.93 N
ATOM 23 N3 G A 935 45.038 -51.711 31.977 1.00 51.71 N
ATOM 24 C4 G A 935 45.388 -51.745 30.685 1.00 52.02 C
ATOM 25 P A A 936 40.412 -55.051 29.463 1.00 47.11 P
ATOM 26 OP1 A A 936 39.459 -56.177 29.508 1.00 47.46 O
ATOM 27 OP2 A A 936 40.645 -54.352 28.175 1.00 47.21 O
ATOM 28 O5' A A 936 40.032 -53.991 30.573 1.00 46.53 O
TER
ATOM 1 O3' A B1001 47.593 -39.216 33.954 1.00 44.70 O
ATOM 2 P U B1002 48.836 -40.179 34.020 1.00 43.45 P
ATOM 3 OP1 U B1002 49.698 -39.602 35.083 1.00 43.14 O
ATOM 4 OP2 U B1002 49.383 -40.324 32.648 1.00 43.78 O
ATOM 5 O5' U B1002 48.197 -41.588 34.497 1.00 43.65 O
ATOM 6 C5' U B1002 47.327 -41.681 35.638 1.00 43.43 C
ATOM 7 C4' U B1002 46.607 -43.024 35.725 1.00 43.71 C
ATOM 8 O4' U B1002 45.634 -43.128 34.668 1.00 43.94 O
ATOM 9 C3' U B1002 47.444 -44.287 35.551 1.00 44.04 C
ATOM 10 O3' U B1002 48.092 -44.680 36.726 1.00 43.92 O
ATOM 11 C2' U B1002 46.402 -45.290 35.132 1.00 44.35 C
ATOM 12 O2' U B1002 45.608 -45.644 36.243 1.00 44.21 O
ATOM 13 C1' U B1002 45.550 -44.457 34.210 1.00 44.34 C
ATOM 14 N1 U B1002 46.050 -44.506 32.861 1.00 44.64 N
ATOM 15 C2 U B1002 46.004 -45.690 32.185 1.00 45.07 C
ATOM 16 O2 U B1002 45.544 -46.715 32.625 1.00 45.23 O
ATOM 17 N3 U B1002 46.512 -45.689 30.921 1.00 45.36 N
ATOM 18 C4 U B1002 47.052 -44.618 30.271 1.00 45.25 C
ATOM 19 O4 U B1002 47.473 -44.757 29.125 1.00 45.56 O
ATOM 20 C5 U B1002 47.036 -43.418 31.053 1.00 44.79 C
ATOM 21 C6 U B1002 46.555 -43.398 32.290 1.00 44.51 C
ATOM 22 P G B1003 49.502 -45.413 36.655 1.00 42.70 P
ATOM 23 OP1 G B1003 50.258 -44.973 37.854 1.00 42.39 O
ATOM 24 OP2 G B1003 50.059 -45.147 35.305 1.00 42.91 O
ATOM 25 O5' G B1003 49.149 -46.972 36.770 1.00 43.06 O
TER
Atoms:
OP1: (44.369,-58.658,25.575)
OP2: (44.995,-56.339,24.685)
C3': (43.045,-54.936,29.679)
C1': (45.213,-54.268,30.375)
C5': (43.917,-56.130,27.607)
O6: (45.975,-48.333,29.952)
O4': (45.340,-55.158,29.294)
C8: (45.908,-52.427,28.677)
C2: (45.014,-50.508,32.470)
C6: (45.710,-49.417,30.458)
C5: (45.733,-50.702,29.886)
C4: (45.388,-51.745,30.685)
P: (45.176,-57.413,25.698)
C4': (44.070,-55.840,29.062)
C2': (43.795,-54.433,30.921)
O2': (43.845,-55.434,31.920)
N1: (45.317,-49.409,31.765)
N2: (44.691,-50.303,33.751)
N3: (45.038,-51.711,31.977)
N7: (46.062,-51.130,28.617)
N9: (45.490,-52.880,29.906)
O5': (45.051,-56.829,27.163)
O3': (41.839,-55.619,29.970)
OP2: (44.995,-56.339,24.685)
C3': (43.045,-54.936,29.679)
C1': (45.213,-54.268,30.375)
C5': (43.917,-56.130,27.607)
O6: (45.975,-48.333,29.952)
O4': (45.340,-55.158,29.294)
C8: (45.908,-52.427,28.677)
C2: (45.014,-50.508,32.470)
C6: (45.710,-49.417,30.458)
C5: (45.733,-50.702,29.886)
C4: (45.388,-51.745,30.685)
P: (45.176,-57.413,25.698)
C4': (44.070,-55.840,29.062)
C2': (43.795,-54.433,30.921)
O2': (43.845,-55.434,31.920)
N1: (45.317,-49.409,31.765)
N2: (44.691,-50.303,33.751)
N3: (45.038,-51.711,31.977)
N7: (46.062,-51.130,28.617)
N9: (45.490,-52.880,29.906)
O5': (45.051,-56.829,27.163)
O3': (41.839,-55.619,29.970)
C4: (47.052,-44.618,30.271)
N3: (46.512,-45.689,30.921)
OP1: (49.698,-39.602,35.083)
OP2: (49.383,-40.324,32.648)
C2: (46.004,-45.690,32.185)
C1': (45.550,-44.457,34.210)
C3': (47.444,-44.287,35.551)
O5': (48.197,-41.588,34.497)
O4': (45.634,-43.128,34.668)
C5': (47.327,-41.681,35.638)
P: (48.836,-40.179,34.020)
C4': (46.607,-43.024,35.725)
C2': (46.402,-45.290,35.132)
O2': (45.608,-45.644,36.243)
N1: (46.050,-44.506,32.861)
O4: (47.473,-44.757,29.125)
O2: (45.544,-46.715,32.625)
C6: (46.555,-43.398,32.290)
C5: (47.036,-43.418,31.053)
O3': (48.092,-44.680,36.726)
N3: (46.512,-45.689,30.921)
OP1: (49.698,-39.602,35.083)
OP2: (49.383,-40.324,32.648)
C2: (46.004,-45.690,32.185)
C1': (45.550,-44.457,34.210)
C3': (47.444,-44.287,35.551)
O5': (48.197,-41.588,34.497)
O4': (45.634,-43.128,34.668)
C5': (47.327,-41.681,35.638)
P: (48.836,-40.179,34.020)
C4': (46.607,-43.024,35.725)
C2': (46.402,-45.290,35.132)
O2': (45.608,-45.644,36.243)
N1: (46.050,-44.506,32.861)
O4: (47.473,-44.757,29.125)
O2: (45.544,-46.715,32.625)
C6: (46.555,-43.398,32.290)
C5: (47.036,-43.418,31.053)
O3': (48.092,-44.680,36.726)
Image (generated by PyMOL):