Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3RKF:A42:A54
Extra
PDB:
ATOM 1 O3' G A 41 -0.248 -6.689 -18.677 1.00 53.77 O
ATOM 2 P G A 42 -0.055 -5.493 -19.733 1.00 59.15 P
ATOM 3 OP1 G A 42 -1.401 -4.943 -20.021 1.00 67.75 O
ATOM 4 OP2 G A 42 0.751 -6.030 -20.857 1.00 57.97 O
ATOM 5 O5' G A 42 0.801 -4.429 -18.914 1.00 61.45 O
ATOM 6 C5' G A 42 0.266 -3.797 -17.761 1.00 64.83 C
ATOM 7 C4' G A 42 1.322 -3.032 -17.002 1.00 62.60 C
ATOM 8 O4' G A 42 2.397 -3.925 -16.609 1.00 64.10 O
ATOM 9 C3' G A 42 2.033 -1.926 -17.766 1.00 60.83 C
ATOM 10 O3' G A 42 1.274 -0.732 -17.852 1.00 60.91 O
ATOM 11 C2' G A 42 3.329 -1.771 -16.982 1.00 64.23 C
ATOM 12 O2' G A 42 3.110 -1.028 -15.791 1.00 65.03 O
ATOM 13 C1' G A 42 3.623 -3.222 -16.598 1.00 62.08 C
ATOM 14 N9 G A 42 4.547 -3.868 -17.550 1.00 63.99 N
ATOM 15 C8 G A 42 4.261 -4.824 -18.496 1.00 57.86 C
ATOM 16 N7 G A 42 5.310 -5.190 -19.185 1.00 56.82 N
ATOM 17 C5 G A 42 6.349 -4.430 -18.662 1.00 60.79 C
ATOM 18 C6 G A 42 7.726 -4.384 -19.003 1.00 60.42 C
ATOM 19 O6 G A 42 8.329 -5.031 -19.867 1.00 57.76 O
ATOM 20 N1 G A 42 8.421 -3.469 -18.218 1.00 60.99 N
ATOM 21 C2 G A 42 7.866 -2.694 -17.230 1.00 60.13 C
ATOM 22 N2 G A 42 8.699 -1.869 -16.579 1.00 57.51 N
ATOM 23 N3 G A 42 6.585 -2.726 -16.902 1.00 62.09 N
ATOM 24 C4 G A 42 5.893 -3.610 -17.653 1.00 64.18 C
ATOM 25 P C A 43 1.334 0.167 -19.182 1.00 70.78 P
ATOM 26 OP1 C A 43 0.324 1.242 -19.029 1.00 61.95 O
ATOM 27 OP2 C A 43 1.221 -0.757 -20.338 1.00 61.54 O
ATOM 28 O5' C A 43 2.800 0.790 -19.127 1.00 64.41 O
TER
ATOM 1 O3' G B 53 17.649 -3.886 -22.920 1.00 59.52 O
ATOM 2 P U B 54 17.755 -4.890 -21.667 1.00 64.22 P
ATOM 3 OP1 U B 54 19.172 -4.892 -21.226 1.00 57.55 O
ATOM 4 OP2 U B 54 17.139 -6.173 -22.083 1.00 51.81 O
ATOM 5 O5' U B 54 16.847 -4.182 -20.567 1.00 60.49 O
ATOM 6 C5' U B 54 17.177 -2.893 -20.067 1.00 58.22 C
ATOM 7 C4' U B 54 16.037 -2.293 -19.280 1.00 60.78 C
ATOM 8 O4' U B 54 14.885 -2.107 -20.146 1.00 56.96 O
ATOM 9 C3' U B 54 15.501 -3.135 -18.131 1.00 65.72 C
ATOM 10 O3' U B 54 16.282 -3.034 -16.954 1.00 68.90 O
ATOM 11 C2' U B 54 14.082 -2.611 -17.971 1.00 60.88 C
ATOM 12 O2' U B 54 14.081 -1.365 -17.289 1.00 56.16 O
ATOM 13 C1' U B 54 13.695 -2.366 -19.429 1.00 55.68 C
ATOM 14 N1 U B 54 13.037 -3.550 -20.028 1.00 53.24 N
ATOM 15 C2 U B 54 11.667 -3.668 -19.896 1.00 54.43 C
ATOM 16 O2 U B 54 10.989 -2.838 -19.316 1.00 56.30 O
ATOM 17 N3 U B 54 11.119 -4.793 -20.467 1.00 54.47 N
ATOM 18 C4 U B 54 11.787 -5.793 -21.145 1.00 53.35 C
ATOM 19 O4 U B 54 11.154 -6.746 -21.606 1.00 50.21 O
ATOM 20 C5 U B 54 13.203 -5.599 -21.237 1.00 51.28 C
ATOM 21 C6 U B 54 13.763 -4.514 -20.690 1.00 52.56 C
ATOM 22 P C B 55 16.258 -4.217 -15.867 1.00 69.97 P
ATOM 23 OP1 C B 55 17.451 -4.043 -15.005 1.00 77.45 O
ATOM 24 OP2 C B 55 16.095 -5.491 -16.611 1.00 57.81 O
ATOM 25 O5' C B 55 14.939 -3.903 -15.035 1.00 62.25 O
TER
ATOM 2 P G A 42 -0.055 -5.493 -19.733 1.00 59.15 P
ATOM 3 OP1 G A 42 -1.401 -4.943 -20.021 1.00 67.75 O
ATOM 4 OP2 G A 42 0.751 -6.030 -20.857 1.00 57.97 O
ATOM 5 O5' G A 42 0.801 -4.429 -18.914 1.00 61.45 O
ATOM 6 C5' G A 42 0.266 -3.797 -17.761 1.00 64.83 C
ATOM 7 C4' G A 42 1.322 -3.032 -17.002 1.00 62.60 C
ATOM 8 O4' G A 42 2.397 -3.925 -16.609 1.00 64.10 O
ATOM 9 C3' G A 42 2.033 -1.926 -17.766 1.00 60.83 C
ATOM 10 O3' G A 42 1.274 -0.732 -17.852 1.00 60.91 O
ATOM 11 C2' G A 42 3.329 -1.771 -16.982 1.00 64.23 C
ATOM 12 O2' G A 42 3.110 -1.028 -15.791 1.00 65.03 O
ATOM 13 C1' G A 42 3.623 -3.222 -16.598 1.00 62.08 C
ATOM 14 N9 G A 42 4.547 -3.868 -17.550 1.00 63.99 N
ATOM 15 C8 G A 42 4.261 -4.824 -18.496 1.00 57.86 C
ATOM 16 N7 G A 42 5.310 -5.190 -19.185 1.00 56.82 N
ATOM 17 C5 G A 42 6.349 -4.430 -18.662 1.00 60.79 C
ATOM 18 C6 G A 42 7.726 -4.384 -19.003 1.00 60.42 C
ATOM 19 O6 G A 42 8.329 -5.031 -19.867 1.00 57.76 O
ATOM 20 N1 G A 42 8.421 -3.469 -18.218 1.00 60.99 N
ATOM 21 C2 G A 42 7.866 -2.694 -17.230 1.00 60.13 C
ATOM 22 N2 G A 42 8.699 -1.869 -16.579 1.00 57.51 N
ATOM 23 N3 G A 42 6.585 -2.726 -16.902 1.00 62.09 N
ATOM 24 C4 G A 42 5.893 -3.610 -17.653 1.00 64.18 C
ATOM 25 P C A 43 1.334 0.167 -19.182 1.00 70.78 P
ATOM 26 OP1 C A 43 0.324 1.242 -19.029 1.00 61.95 O
ATOM 27 OP2 C A 43 1.221 -0.757 -20.338 1.00 61.54 O
ATOM 28 O5' C A 43 2.800 0.790 -19.127 1.00 64.41 O
TER
ATOM 1 O3' G B 53 17.649 -3.886 -22.920 1.00 59.52 O
ATOM 2 P U B 54 17.755 -4.890 -21.667 1.00 64.22 P
ATOM 3 OP1 U B 54 19.172 -4.892 -21.226 1.00 57.55 O
ATOM 4 OP2 U B 54 17.139 -6.173 -22.083 1.00 51.81 O
ATOM 5 O5' U B 54 16.847 -4.182 -20.567 1.00 60.49 O
ATOM 6 C5' U B 54 17.177 -2.893 -20.067 1.00 58.22 C
ATOM 7 C4' U B 54 16.037 -2.293 -19.280 1.00 60.78 C
ATOM 8 O4' U B 54 14.885 -2.107 -20.146 1.00 56.96 O
ATOM 9 C3' U B 54 15.501 -3.135 -18.131 1.00 65.72 C
ATOM 10 O3' U B 54 16.282 -3.034 -16.954 1.00 68.90 O
ATOM 11 C2' U B 54 14.082 -2.611 -17.971 1.00 60.88 C
ATOM 12 O2' U B 54 14.081 -1.365 -17.289 1.00 56.16 O
ATOM 13 C1' U B 54 13.695 -2.366 -19.429 1.00 55.68 C
ATOM 14 N1 U B 54 13.037 -3.550 -20.028 1.00 53.24 N
ATOM 15 C2 U B 54 11.667 -3.668 -19.896 1.00 54.43 C
ATOM 16 O2 U B 54 10.989 -2.838 -19.316 1.00 56.30 O
ATOM 17 N3 U B 54 11.119 -4.793 -20.467 1.00 54.47 N
ATOM 18 C4 U B 54 11.787 -5.793 -21.145 1.00 53.35 C
ATOM 19 O4 U B 54 11.154 -6.746 -21.606 1.00 50.21 O
ATOM 20 C5 U B 54 13.203 -5.599 -21.237 1.00 51.28 C
ATOM 21 C6 U B 54 13.763 -4.514 -20.690 1.00 52.56 C
ATOM 22 P C B 55 16.258 -4.217 -15.867 1.00 69.97 P
ATOM 23 OP1 C B 55 17.451 -4.043 -15.005 1.00 77.45 O
ATOM 24 OP2 C B 55 16.095 -5.491 -16.611 1.00 57.81 O
ATOM 25 O5' C B 55 14.939 -3.903 -15.035 1.00 62.25 O
TER
Atoms:
OP1: (-1.401,-4.943,-20.021)
OP2: (0.751,-6.030,-20.857)
C3': (2.033,-1.926,-17.766)
C1': (3.623,-3.222,-16.598)
C5': (0.266,-3.797,-17.761)
O6: (8.329,-5.031,-19.867)
O4': (2.397,-3.925,-16.609)
C8: (4.261,-4.824,-18.496)
C2: (7.866,-2.694,-17.230)
C6: (7.726,-4.384,-19.003)
C5: (6.349,-4.430,-18.662)
C4: (5.893,-3.610,-17.653)
P: (-0.055,-5.493,-19.733)
C4': (1.322,-3.032,-17.002)
C2': (3.329,-1.771,-16.982)
O2': (3.110,-1.028,-15.791)
N1: (8.421,-3.469,-18.218)
N2: (8.699,-1.869,-16.579)
N3: (6.585,-2.726,-16.902)
N7: (5.310,-5.190,-19.185)
N9: (4.547,-3.868,-17.550)
O5': (0.801,-4.429,-18.914)
O3': (1.274,-0.732,-17.852)
OP2: (0.751,-6.030,-20.857)
C3': (2.033,-1.926,-17.766)
C1': (3.623,-3.222,-16.598)
C5': (0.266,-3.797,-17.761)
O6: (8.329,-5.031,-19.867)
O4': (2.397,-3.925,-16.609)
C8: (4.261,-4.824,-18.496)
C2: (7.866,-2.694,-17.230)
C6: (7.726,-4.384,-19.003)
C5: (6.349,-4.430,-18.662)
C4: (5.893,-3.610,-17.653)
P: (-0.055,-5.493,-19.733)
C4': (1.322,-3.032,-17.002)
C2': (3.329,-1.771,-16.982)
O2': (3.110,-1.028,-15.791)
N1: (8.421,-3.469,-18.218)
N2: (8.699,-1.869,-16.579)
N3: (6.585,-2.726,-16.902)
N7: (5.310,-5.190,-19.185)
N9: (4.547,-3.868,-17.550)
O5': (0.801,-4.429,-18.914)
O3': (1.274,-0.732,-17.852)
C4: (11.787,-5.793,-21.145)
N3: (11.119,-4.793,-20.467)
OP1: (19.172,-4.892,-21.226)
OP2: (17.139,-6.173,-22.083)
C2: (11.667,-3.668,-19.896)
C1': (13.695,-2.366,-19.429)
C3': (15.501,-3.135,-18.131)
O5': (16.847,-4.182,-20.567)
O4': (14.885,-2.107,-20.146)
C5': (17.177,-2.893,-20.067)
P: (17.755,-4.890,-21.667)
C4': (16.037,-2.293,-19.280)
C2': (14.082,-2.611,-17.971)
O2': (14.081,-1.365,-17.289)
N1: (13.037,-3.550,-20.028)
O4: (11.154,-6.746,-21.606)
O2: (10.989,-2.838,-19.316)
C6: (13.763,-4.514,-20.690)
C5: (13.203,-5.599,-21.237)
O3': (16.282,-3.034,-16.954)
N3: (11.119,-4.793,-20.467)
OP1: (19.172,-4.892,-21.226)
OP2: (17.139,-6.173,-22.083)
C2: (11.667,-3.668,-19.896)
C1': (13.695,-2.366,-19.429)
C3': (15.501,-3.135,-18.131)
O5': (16.847,-4.182,-20.567)
O4': (14.885,-2.107,-20.146)
C5': (17.177,-2.893,-20.067)
P: (17.755,-4.890,-21.667)
C4': (16.037,-2.293,-19.280)
C2': (14.082,-2.611,-17.971)
O2': (14.081,-1.365,-17.289)
N1: (13.037,-3.550,-20.028)
O4: (11.154,-6.746,-21.606)
O2: (10.989,-2.838,-19.316)
C6: (13.763,-4.514,-20.690)
C5: (13.203,-5.599,-21.237)
O3': (16.282,-3.034,-16.954)
Image (generated by PyMOL):