Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2DR5:B5:B25
Extra
PDB:
ATOM 1 O3' C A 4 -23.467 26.644 20.033 1.00 72.15 O
ATOM 2 P G A 5 -24.702 27.568 19.574 1.00 76.73 P
ATOM 3 OP1 G A 5 -24.967 27.312 18.132 1.00 76.55 O
ATOM 4 OP2 G A 5 -24.436 28.951 20.034 1.00 75.14 O
ATOM 5 O5' G A 5 -25.925 27.014 20.434 1.00 79.07 O
ATOM 6 C5' G A 5 -26.309 25.648 20.352 1.00 83.29 C
ATOM 7 C4' G A 5 -27.274 25.303 21.463 1.00 87.30 C
ATOM 8 O4' G A 5 -26.594 25.274 22.745 1.00 88.05 O
ATOM 9 C3' G A 5 -28.417 26.276 21.681 1.00 89.22 C
ATOM 10 O3' G A 5 -29.461 26.044 20.749 1.00 92.16 O
ATOM 11 C2' G A 5 -28.847 25.946 23.107 1.00 89.20 C
ATOM 12 O2' G A 5 -29.672 24.799 23.197 1.00 88.31 O
ATOM 13 C1' G A 5 -27.496 25.666 23.767 1.00 88.60 C
ATOM 14 N9 G A 5 -26.948 26.848 24.415 1.00 89.27 N
ATOM 15 C8 G A 5 -25.948 27.663 23.941 1.00 89.12 C
ATOM 16 N7 G A 5 -25.655 28.638 24.755 1.00 89.30 N
ATOM 17 C5 G A 5 -26.516 28.458 25.829 1.00 89.43 C
ATOM 18 C6 G A 5 -26.661 29.206 27.022 1.00 89.74 C
ATOM 19 O6 G A 5 -26.033 30.208 27.385 1.00 90.70 O
ATOM 20 N1 G A 5 -27.658 28.680 27.836 1.00 90.31 N
ATOM 21 C2 G A 5 -28.416 27.574 27.545 1.00 90.34 C
ATOM 22 N2 G A 5 -29.326 27.223 28.469 1.00 90.10 N
ATOM 23 N3 G A 5 -28.289 26.865 26.434 1.00 89.71 N
ATOM 24 C4 G A 5 -27.326 27.361 25.629 1.00 89.51 C
ATOM 25 P G A 6 -30.587 27.163 20.535 1.00 94.90 P
ATOM 26 OP1 G A 6 -31.655 26.562 19.696 1.00 94.91 O
ATOM 27 OP2 G A 6 -29.922 28.417 20.100 1.00 93.64 O
ATOM 28 O5' G A 6 -31.157 27.394 22.003 1.00 96.61 O
TER
ATOM 1 O3' C B 24 -30.048 33.901 37.129 1.00117.85 O
ATOM 2 P U B 25 -29.617 32.347 37.294 1.00118.31 P
ATOM 3 OP1 U B 25 -30.164 31.837 38.582 1.00117.50 O
ATOM 4 OP2 U B 25 -28.155 32.267 37.041 1.00117.89 O
ATOM 5 O5' U B 25 -30.354 31.573 36.102 1.00117.11 O
ATOM 6 C5' U B 25 -31.607 30.911 36.309 1.00115.16 C
ATOM 7 C4' U B 25 -31.898 29.925 35.186 1.00114.18 C
ATOM 8 O4' U B 25 -31.791 30.602 33.904 1.00113.94 O
ATOM 9 C3' U B 25 -30.979 28.718 35.026 1.00113.12 C
ATOM 10 O3' U B 25 -31.366 27.640 35.866 1.00112.12 O
ATOM 11 C2' U B 25 -31.238 28.307 33.585 1.00112.59 C
ATOM 12 O2' U B 25 -32.423 27.549 33.466 1.00111.14 O
ATOM 13 C1' U B 25 -31.411 29.665 32.905 1.00112.76 C
ATOM 14 N1 U B 25 -30.180 30.134 32.252 1.00112.02 N
ATOM 15 C2 U B 25 -29.731 29.422 31.152 1.00112.30 C
ATOM 16 O2 U B 25 -30.315 28.439 30.714 1.00112.04 O
ATOM 17 N3 U B 25 -28.577 29.904 30.583 1.00111.89 N
ATOM 18 C4 U B 25 -27.844 31.001 30.990 1.00111.41 C
ATOM 19 O4 U B 25 -26.837 31.328 30.356 1.00110.35 O
ATOM 20 C5 U B 25 -28.375 31.680 32.134 1.00111.19 C
ATOM 21 C6 U B 25 -29.497 31.235 32.711 1.00111.32 C
ATOM 22 P G B 26 -30.336 26.432 36.136 1.00112.30 P
ATOM 23 OP1 G B 26 -30.874 25.619 37.259 1.00112.37 O
ATOM 24 OP2 G B 26 -28.974 27.025 36.244 1.00112.23 O
ATOM 25 O5' G B 26 -30.367 25.525 34.823 1.00109.90 O
TER
ATOM 2 P G A 5 -24.702 27.568 19.574 1.00 76.73 P
ATOM 3 OP1 G A 5 -24.967 27.312 18.132 1.00 76.55 O
ATOM 4 OP2 G A 5 -24.436 28.951 20.034 1.00 75.14 O
ATOM 5 O5' G A 5 -25.925 27.014 20.434 1.00 79.07 O
ATOM 6 C5' G A 5 -26.309 25.648 20.352 1.00 83.29 C
ATOM 7 C4' G A 5 -27.274 25.303 21.463 1.00 87.30 C
ATOM 8 O4' G A 5 -26.594 25.274 22.745 1.00 88.05 O
ATOM 9 C3' G A 5 -28.417 26.276 21.681 1.00 89.22 C
ATOM 10 O3' G A 5 -29.461 26.044 20.749 1.00 92.16 O
ATOM 11 C2' G A 5 -28.847 25.946 23.107 1.00 89.20 C
ATOM 12 O2' G A 5 -29.672 24.799 23.197 1.00 88.31 O
ATOM 13 C1' G A 5 -27.496 25.666 23.767 1.00 88.60 C
ATOM 14 N9 G A 5 -26.948 26.848 24.415 1.00 89.27 N
ATOM 15 C8 G A 5 -25.948 27.663 23.941 1.00 89.12 C
ATOM 16 N7 G A 5 -25.655 28.638 24.755 1.00 89.30 N
ATOM 17 C5 G A 5 -26.516 28.458 25.829 1.00 89.43 C
ATOM 18 C6 G A 5 -26.661 29.206 27.022 1.00 89.74 C
ATOM 19 O6 G A 5 -26.033 30.208 27.385 1.00 90.70 O
ATOM 20 N1 G A 5 -27.658 28.680 27.836 1.00 90.31 N
ATOM 21 C2 G A 5 -28.416 27.574 27.545 1.00 90.34 C
ATOM 22 N2 G A 5 -29.326 27.223 28.469 1.00 90.10 N
ATOM 23 N3 G A 5 -28.289 26.865 26.434 1.00 89.71 N
ATOM 24 C4 G A 5 -27.326 27.361 25.629 1.00 89.51 C
ATOM 25 P G A 6 -30.587 27.163 20.535 1.00 94.90 P
ATOM 26 OP1 G A 6 -31.655 26.562 19.696 1.00 94.91 O
ATOM 27 OP2 G A 6 -29.922 28.417 20.100 1.00 93.64 O
ATOM 28 O5' G A 6 -31.157 27.394 22.003 1.00 96.61 O
TER
ATOM 1 O3' C B 24 -30.048 33.901 37.129 1.00117.85 O
ATOM 2 P U B 25 -29.617 32.347 37.294 1.00118.31 P
ATOM 3 OP1 U B 25 -30.164 31.837 38.582 1.00117.50 O
ATOM 4 OP2 U B 25 -28.155 32.267 37.041 1.00117.89 O
ATOM 5 O5' U B 25 -30.354 31.573 36.102 1.00117.11 O
ATOM 6 C5' U B 25 -31.607 30.911 36.309 1.00115.16 C
ATOM 7 C4' U B 25 -31.898 29.925 35.186 1.00114.18 C
ATOM 8 O4' U B 25 -31.791 30.602 33.904 1.00113.94 O
ATOM 9 C3' U B 25 -30.979 28.718 35.026 1.00113.12 C
ATOM 10 O3' U B 25 -31.366 27.640 35.866 1.00112.12 O
ATOM 11 C2' U B 25 -31.238 28.307 33.585 1.00112.59 C
ATOM 12 O2' U B 25 -32.423 27.549 33.466 1.00111.14 O
ATOM 13 C1' U B 25 -31.411 29.665 32.905 1.00112.76 C
ATOM 14 N1 U B 25 -30.180 30.134 32.252 1.00112.02 N
ATOM 15 C2 U B 25 -29.731 29.422 31.152 1.00112.30 C
ATOM 16 O2 U B 25 -30.315 28.439 30.714 1.00112.04 O
ATOM 17 N3 U B 25 -28.577 29.904 30.583 1.00111.89 N
ATOM 18 C4 U B 25 -27.844 31.001 30.990 1.00111.41 C
ATOM 19 O4 U B 25 -26.837 31.328 30.356 1.00110.35 O
ATOM 20 C5 U B 25 -28.375 31.680 32.134 1.00111.19 C
ATOM 21 C6 U B 25 -29.497 31.235 32.711 1.00111.32 C
ATOM 22 P G B 26 -30.336 26.432 36.136 1.00112.30 P
ATOM 23 OP1 G B 26 -30.874 25.619 37.259 1.00112.37 O
ATOM 24 OP2 G B 26 -28.974 27.025 36.244 1.00112.23 O
ATOM 25 O5' G B 26 -30.367 25.525 34.823 1.00109.90 O
TER
Atoms:
OP1: (-24.967,27.312,18.132)
OP2: (-24.436,28.951,20.034)
C3': (-28.417,26.276,21.681)
C1': (-27.496,25.666,23.767)
C5': (-26.309,25.648,20.352)
O6: (-26.033,30.208,27.385)
O4': (-26.594,25.274,22.745)
C8: (-25.948,27.663,23.941)
C2: (-28.416,27.574,27.545)
C6: (-26.661,29.206,27.022)
C5: (-26.516,28.458,25.829)
C4: (-27.326,27.361,25.629)
P: (-24.702,27.568,19.574)
C4': (-27.274,25.303,21.463)
C2': (-28.847,25.946,23.107)
O2': (-29.672,24.799,23.197)
N1: (-27.658,28.680,27.836)
N2: (-29.326,27.223,28.469)
N3: (-28.289,26.865,26.434)
N7: (-25.655,28.638,24.755)
N9: (-26.948,26.848,24.415)
O5': (-25.925,27.014,20.434)
O3': (-29.461,26.044,20.749)
OP2: (-24.436,28.951,20.034)
C3': (-28.417,26.276,21.681)
C1': (-27.496,25.666,23.767)
C5': (-26.309,25.648,20.352)
O6: (-26.033,30.208,27.385)
O4': (-26.594,25.274,22.745)
C8: (-25.948,27.663,23.941)
C2: (-28.416,27.574,27.545)
C6: (-26.661,29.206,27.022)
C5: (-26.516,28.458,25.829)
C4: (-27.326,27.361,25.629)
P: (-24.702,27.568,19.574)
C4': (-27.274,25.303,21.463)
C2': (-28.847,25.946,23.107)
O2': (-29.672,24.799,23.197)
N1: (-27.658,28.680,27.836)
N2: (-29.326,27.223,28.469)
N3: (-28.289,26.865,26.434)
N7: (-25.655,28.638,24.755)
N9: (-26.948,26.848,24.415)
O5': (-25.925,27.014,20.434)
O3': (-29.461,26.044,20.749)
C4: (-27.844,31.001,30.990)
N3: (-28.577,29.904,30.583)
OP1: (-30.164,31.837,38.582)
OP2: (-28.155,32.267,37.041)
C2: (-29.731,29.422,31.152)
C1': (-31.411,29.665,32.905)
C3': (-30.979,28.718,35.026)
O5': (-30.354,31.573,36.102)
O4': (-31.791,30.602,33.904)
C5': (-31.607,30.911,36.309)
P: (-29.617,32.347,37.294)
C4': (-31.898,29.925,35.186)
C2': (-31.238,28.307,33.585)
O2': (-32.423,27.549,33.466)
N1: (-30.180,30.134,32.252)
O4: (-26.837,31.328,30.356)
O2: (-30.315,28.439,30.714)
C6: (-29.497,31.235,32.711)
C5: (-28.375,31.680,32.134)
O3': (-31.366,27.640,35.866)
N3: (-28.577,29.904,30.583)
OP1: (-30.164,31.837,38.582)
OP2: (-28.155,32.267,37.041)
C2: (-29.731,29.422,31.152)
C1': (-31.411,29.665,32.905)
C3': (-30.979,28.718,35.026)
O5': (-30.354,31.573,36.102)
O4': (-31.791,30.602,33.904)
C5': (-31.607,30.911,36.309)
P: (-29.617,32.347,37.294)
C4': (-31.898,29.925,35.186)
C2': (-31.238,28.307,33.585)
O2': (-32.423,27.549,33.466)
N1: (-30.180,30.134,32.252)
O4: (-26.837,31.328,30.356)
O2: (-30.315,28.439,30.714)
C6: (-29.497,31.235,32.711)
C5: (-28.375,31.680,32.134)
O3': (-31.366,27.640,35.866)
Image (generated by PyMOL):