Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1KD5:A7:B2
Extra
PDB:
ATOM 1 O3' A A 6 -3.822 9.176 23.549 1.00 25.47 O
ATOM 2 P G A 7 -2.913 7.860 23.274 1.00 26.01 P
ATOM 3 OP1 G A 7 -1.548 8.357 22.888 1.00 30.89 O
ATOM 4 OP2 G A 7 -3.616 6.952 22.342 1.00 26.36 O
ATOM 5 O5' G A 7 -2.800 7.122 24.692 1.00 26.63 O
ATOM 6 C5' G A 7 -1.957 7.652 25.768 1.00 22.91 C
ATOM 7 C4' G A 7 -2.187 6.818 27.020 1.00 23.46 C
ATOM 8 O4' G A 7 -3.598 6.879 27.420 1.00 21.25 O
ATOM 9 C3' G A 7 -1.953 5.313 26.800 1.00 23.12 C
ATOM 10 O3' G A 7 -0.538 5.037 26.846 1.00 24.13 O
ATOM 11 C2' G A 7 -2.711 4.742 28.022 1.00 21.85 C
ATOM 12 O2' G A 7 -1.975 5.023 29.224 1.00 21.98 O
ATOM 13 C1' G A 7 -3.972 5.611 27.961 1.00 20.74 C
ATOM 14 N9 G A 7 -5.097 5.096 27.172 1.00 21.26 N
ATOM 15 C8 G A 7 -5.571 5.657 26.011 1.00 20.47 C
ATOM 16 N7 G A 7 -6.573 5.009 25.483 1.00 21.34 N
ATOM 17 C5 G A 7 -6.808 3.944 26.346 1.00 22.84 C
ATOM 18 C6 G A 7 -7.792 2.918 26.283 1.00 23.23 C
ATOM 19 O6 G A 7 -8.683 2.745 25.418 1.00 23.30 O
ATOM 20 N1 G A 7 -7.695 2.008 27.335 1.00 22.13 N
ATOM 21 C2 G A 7 -6.752 2.100 28.353 1.00 25.58 C
ATOM 22 N2 G A 7 -6.809 1.114 29.296 1.00 24.49 N
ATOM 23 N3 G A 7 -5.842 3.068 28.398 1.00 24.62 N
ATOM 24 C4 G A 7 -5.900 3.980 27.390 1.00 20.83 C
ATOM 25 P C A 8 0.125 3.898 25.928 1.00 26.19 P
ATOM 26 OP1 C A 8 1.580 3.956 26.232 1.00 28.12 O
ATOM 27 OP2 C A 8 -0.301 4.025 24.515 1.00 28.36 O
ATOM 28 O5' C A 8 -0.428 2.494 26.425 1.00 25.61 O
TER
ATOM 1 O3' G B 1 -14.304 -5.637 23.866 1.00 27.79 O
ATOM 2 P U B 2 -15.206 -4.669 24.812 1.00 29.19 P
ATOM 3 OP1 U B 2 -16.187 -5.529 25.510 1.00 30.65 O
ATOM 4 OP2 U B 2 -15.592 -3.516 23.949 1.00 26.90 O
ATOM 5 O5' U B 2 -14.134 -4.144 25.889 1.00 28.80 O
ATOM 6 C5' U B 2 -13.563 -5.016 26.875 1.00 25.77 C
ATOM 7 C4' U B 2 -12.431 -4.306 27.616 1.00 25.84 C
ATOM 8 O4' U B 2 -11.401 -3.881 26.677 1.00 25.13 O
ATOM 9 C3' U B 2 -12.856 -3.013 28.328 1.00 23.51 C
ATOM 10 O3' U B 2 -13.421 -3.274 29.618 1.00 25.00 O
ATOM 11 C2' U B 2 -11.495 -2.311 28.441 1.00 23.38 C
ATOM 12 O2' U B 2 -10.652 -2.749 29.495 1.00 25.96 O
ATOM 13 C1' U B 2 -10.837 -2.642 27.092 1.00 23.52 C
ATOM 14 N1 U B 2 -11.050 -1.575 26.095 1.00 23.95 N
ATOM 15 C2 U B 2 -10.296 -0.419 26.185 1.00 25.16 C
ATOM 16 O2 U B 2 -9.493 -0.275 27.111 1.00 23.06 O
ATOM 17 N3 U B 2 -10.494 0.561 25.221 1.00 22.60 N
ATOM 18 C4 U B 2 -11.391 0.489 24.167 1.00 22.45 C
ATOM 19 O4 U B 2 -11.531 1.473 23.426 1.00 24.97 O
ATOM 20 C5 U B 2 -12.206 -0.701 24.172 1.00 24.92 C
ATOM 21 C6 U B 2 -12.004 -1.684 25.082 1.00 23.54 C
ATOM 22 P C B 3 -14.626 -2.407 30.230 1.00 27.73 P
ATOM 23 OP1 C B 3 -14.934 -3.006 31.540 1.00 29.46 O
ATOM 24 OP2 C B 3 -15.689 -2.238 29.185 1.00 30.37 O
ATOM 25 O5' C B 3 -14.072 -0.907 30.405 1.00 26.35 O
TER
ATOM 2 P G A 7 -2.913 7.860 23.274 1.00 26.01 P
ATOM 3 OP1 G A 7 -1.548 8.357 22.888 1.00 30.89 O
ATOM 4 OP2 G A 7 -3.616 6.952 22.342 1.00 26.36 O
ATOM 5 O5' G A 7 -2.800 7.122 24.692 1.00 26.63 O
ATOM 6 C5' G A 7 -1.957 7.652 25.768 1.00 22.91 C
ATOM 7 C4' G A 7 -2.187 6.818 27.020 1.00 23.46 C
ATOM 8 O4' G A 7 -3.598 6.879 27.420 1.00 21.25 O
ATOM 9 C3' G A 7 -1.953 5.313 26.800 1.00 23.12 C
ATOM 10 O3' G A 7 -0.538 5.037 26.846 1.00 24.13 O
ATOM 11 C2' G A 7 -2.711 4.742 28.022 1.00 21.85 C
ATOM 12 O2' G A 7 -1.975 5.023 29.224 1.00 21.98 O
ATOM 13 C1' G A 7 -3.972 5.611 27.961 1.00 20.74 C
ATOM 14 N9 G A 7 -5.097 5.096 27.172 1.00 21.26 N
ATOM 15 C8 G A 7 -5.571 5.657 26.011 1.00 20.47 C
ATOM 16 N7 G A 7 -6.573 5.009 25.483 1.00 21.34 N
ATOM 17 C5 G A 7 -6.808 3.944 26.346 1.00 22.84 C
ATOM 18 C6 G A 7 -7.792 2.918 26.283 1.00 23.23 C
ATOM 19 O6 G A 7 -8.683 2.745 25.418 1.00 23.30 O
ATOM 20 N1 G A 7 -7.695 2.008 27.335 1.00 22.13 N
ATOM 21 C2 G A 7 -6.752 2.100 28.353 1.00 25.58 C
ATOM 22 N2 G A 7 -6.809 1.114 29.296 1.00 24.49 N
ATOM 23 N3 G A 7 -5.842 3.068 28.398 1.00 24.62 N
ATOM 24 C4 G A 7 -5.900 3.980 27.390 1.00 20.83 C
ATOM 25 P C A 8 0.125 3.898 25.928 1.00 26.19 P
ATOM 26 OP1 C A 8 1.580 3.956 26.232 1.00 28.12 O
ATOM 27 OP2 C A 8 -0.301 4.025 24.515 1.00 28.36 O
ATOM 28 O5' C A 8 -0.428 2.494 26.425 1.00 25.61 O
TER
ATOM 1 O3' G B 1 -14.304 -5.637 23.866 1.00 27.79 O
ATOM 2 P U B 2 -15.206 -4.669 24.812 1.00 29.19 P
ATOM 3 OP1 U B 2 -16.187 -5.529 25.510 1.00 30.65 O
ATOM 4 OP2 U B 2 -15.592 -3.516 23.949 1.00 26.90 O
ATOM 5 O5' U B 2 -14.134 -4.144 25.889 1.00 28.80 O
ATOM 6 C5' U B 2 -13.563 -5.016 26.875 1.00 25.77 C
ATOM 7 C4' U B 2 -12.431 -4.306 27.616 1.00 25.84 C
ATOM 8 O4' U B 2 -11.401 -3.881 26.677 1.00 25.13 O
ATOM 9 C3' U B 2 -12.856 -3.013 28.328 1.00 23.51 C
ATOM 10 O3' U B 2 -13.421 -3.274 29.618 1.00 25.00 O
ATOM 11 C2' U B 2 -11.495 -2.311 28.441 1.00 23.38 C
ATOM 12 O2' U B 2 -10.652 -2.749 29.495 1.00 25.96 O
ATOM 13 C1' U B 2 -10.837 -2.642 27.092 1.00 23.52 C
ATOM 14 N1 U B 2 -11.050 -1.575 26.095 1.00 23.95 N
ATOM 15 C2 U B 2 -10.296 -0.419 26.185 1.00 25.16 C
ATOM 16 O2 U B 2 -9.493 -0.275 27.111 1.00 23.06 O
ATOM 17 N3 U B 2 -10.494 0.561 25.221 1.00 22.60 N
ATOM 18 C4 U B 2 -11.391 0.489 24.167 1.00 22.45 C
ATOM 19 O4 U B 2 -11.531 1.473 23.426 1.00 24.97 O
ATOM 20 C5 U B 2 -12.206 -0.701 24.172 1.00 24.92 C
ATOM 21 C6 U B 2 -12.004 -1.684 25.082 1.00 23.54 C
ATOM 22 P C B 3 -14.626 -2.407 30.230 1.00 27.73 P
ATOM 23 OP1 C B 3 -14.934 -3.006 31.540 1.00 29.46 O
ATOM 24 OP2 C B 3 -15.689 -2.238 29.185 1.00 30.37 O
ATOM 25 O5' C B 3 -14.072 -0.907 30.405 1.00 26.35 O
TER
Atoms:
OP1: (-1.548,8.357,22.888)
OP2: (-3.616,6.952,22.342)
C3': (-1.953,5.313,26.800)
C1': (-3.972,5.611,27.961)
C5': (-1.957,7.652,25.768)
O6: (-8.683,2.745,25.418)
O4': (-3.598,6.879,27.420)
C8: (-5.571,5.657,26.011)
C2: (-6.752,2.100,28.353)
C6: (-7.792,2.918,26.283)
C5: (-6.808,3.944,26.346)
C4: (-5.900,3.980,27.390)
P: (-2.913,7.860,23.274)
C4': (-2.187,6.818,27.020)
C2': (-2.711,4.742,28.022)
O2': (-1.975,5.023,29.224)
N1: (-7.695,2.008,27.335)
N2: (-6.809,1.114,29.296)
N3: (-5.842,3.068,28.398)
N7: (-6.573,5.009,25.483)
N9: (-5.097,5.096,27.172)
O5': (-2.800,7.122,24.692)
O3': (-0.538,5.037,26.846)
OP2: (-3.616,6.952,22.342)
C3': (-1.953,5.313,26.800)
C1': (-3.972,5.611,27.961)
C5': (-1.957,7.652,25.768)
O6: (-8.683,2.745,25.418)
O4': (-3.598,6.879,27.420)
C8: (-5.571,5.657,26.011)
C2: (-6.752,2.100,28.353)
C6: (-7.792,2.918,26.283)
C5: (-6.808,3.944,26.346)
C4: (-5.900,3.980,27.390)
P: (-2.913,7.860,23.274)
C4': (-2.187,6.818,27.020)
C2': (-2.711,4.742,28.022)
O2': (-1.975,5.023,29.224)
N1: (-7.695,2.008,27.335)
N2: (-6.809,1.114,29.296)
N3: (-5.842,3.068,28.398)
N7: (-6.573,5.009,25.483)
N9: (-5.097,5.096,27.172)
O5': (-2.800,7.122,24.692)
O3': (-0.538,5.037,26.846)
C4: (-11.391,0.489,24.167)
N3: (-10.494,0.561,25.221)
OP1: (-16.187,-5.529,25.510)
OP2: (-15.592,-3.516,23.949)
C2: (-10.296,-0.419,26.185)
C1': (-10.837,-2.642,27.092)
C3': (-12.856,-3.013,28.328)
O5': (-14.134,-4.144,25.889)
O4': (-11.401,-3.881,26.677)
C5': (-13.563,-5.016,26.875)
P: (-15.206,-4.669,24.812)
C4': (-12.431,-4.306,27.616)
C2': (-11.495,-2.311,28.441)
O2': (-10.652,-2.749,29.495)
N1: (-11.050,-1.575,26.095)
O4: (-11.531,1.473,23.426)
O2: (-9.493,-0.275,27.111)
C6: (-12.004,-1.684,25.082)
C5: (-12.206,-0.701,24.172)
O3': (-13.421,-3.274,29.618)
N3: (-10.494,0.561,25.221)
OP1: (-16.187,-5.529,25.510)
OP2: (-15.592,-3.516,23.949)
C2: (-10.296,-0.419,26.185)
C1': (-10.837,-2.642,27.092)
C3': (-12.856,-3.013,28.328)
O5': (-14.134,-4.144,25.889)
O4': (-11.401,-3.881,26.677)
C5': (-13.563,-5.016,26.875)
P: (-15.206,-4.669,24.812)
C4': (-12.431,-4.306,27.616)
C2': (-11.495,-2.311,28.441)
O2': (-10.652,-2.749,29.495)
N1: (-11.050,-1.575,26.095)
O4: (-11.531,1.473,23.426)
O2: (-9.493,-0.275,27.111)
C6: (-12.004,-1.684,25.082)
C5: (-12.206,-0.701,24.172)
O3': (-13.421,-3.274,29.618)
Image (generated by PyMOL):