Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1DFU:M5:N12
Extra
PDB:
ATOM 1 O3' U A 4 15.612 22.864 11.831 1.00 25.77 O
ATOM 2 P G A 5 14.816 23.175 10.469 1.00 27.20 P
ATOM 3 OP1 G A 5 13.560 22.379 10.501 1.00 26.95 O
ATOM 4 OP2 G A 5 15.723 23.064 9.294 1.00 25.61 O
ATOM 5 O5' G A 5 14.429 24.712 10.618 1.00 26.44 O
ATOM 6 C5' G A 5 13.634 25.141 11.713 1.00 27.36 C
ATOM 7 C4' G A 5 13.539 26.648 11.752 1.00 27.48 C
ATOM 8 O4' G A 5 14.824 27.224 12.104 1.00 26.49 O
ATOM 9 C3' G A 5 13.192 27.350 10.454 1.00 28.78 C
ATOM 10 O3' G A 5 11.803 27.294 10.168 1.00 32.19 O
ATOM 11 C2' G A 5 13.627 28.774 10.768 1.00 26.45 C
ATOM 12 O2' G A 5 12.701 29.443 11.603 1.00 25.90 O
ATOM 13 C1' G A 5 14.928 28.520 11.530 1.00 25.37 C
ATOM 14 N9 G A 5 16.059 28.542 10.612 1.00 21.88 N
ATOM 15 C8 G A 5 16.721 27.467 10.059 1.00 21.46 C
ATOM 16 N7 G A 5 17.666 27.821 9.231 1.00 21.03 N
ATOM 17 C5 G A 5 17.629 29.213 9.242 1.00 19.17 C
ATOM 18 C6 G A 5 18.409 30.163 8.528 1.00 18.18 C
ATOM 19 O6 G A 5 19.327 29.959 7.725 1.00 16.65 O
ATOM 20 N1 G A 5 18.032 31.468 8.831 1.00 16.74 N
ATOM 21 C2 G A 5 17.037 31.820 9.714 1.00 16.96 C
ATOM 22 N2 G A 5 16.826 33.133 9.880 1.00 17.30 N
ATOM 23 N3 G A 5 16.304 30.945 10.387 1.00 17.90 N
ATOM 24 C4 G A 5 16.652 29.670 10.100 1.00 20.38 C
ATOM 25 P C A 6 11.278 27.817 8.752 1.00 38.62 P
ATOM 26 OP1 C A 6 9.800 27.992 8.831 1.00 39.63 O
ATOM 27 OP2 C A 6 11.856 26.922 7.717 1.00 34.06 O
ATOM 28 O5' C A 6 11.997 29.243 8.601 1.00 34.94 O
TER
ATOM 1 O3' G B 11 24.796 37.664 3.594 1.00 14.00 O
ATOM 2 P U B 12 25.328 37.164 5.033 1.00 16.15 P
ATOM 3 OP1 U B 12 26.141 38.273 5.596 1.00 14.18 O
ATOM 4 OP2 U B 12 25.925 35.823 4.879 1.00 16.07 O
ATOM 5 O5' U B 12 24.013 37.025 5.920 1.00 15.79 O
ATOM 6 C5' U B 12 23.209 38.159 6.199 1.00 14.28 C
ATOM 7 C4' U B 12 21.928 37.726 6.865 1.00 14.67 C
ATOM 8 O4' U B 12 21.279 36.753 6.010 1.00 15.19 O
ATOM 9 C3' U B 12 22.093 37.004 8.192 1.00 14.68 C
ATOM 10 O3' U B 12 22.185 37.959 9.242 1.00 16.36 O
ATOM 11 C2' U B 12 20.807 36.187 8.277 1.00 16.09 C
ATOM 12 O2' U B 12 19.706 36.925 8.778 1.00 14.55 O
ATOM 13 C1' U B 12 20.582 35.816 6.808 1.00 14.14 C
ATOM 14 N1 U B 12 21.059 34.470 6.462 1.00 14.99 N
ATOM 15 C2 U B 12 20.294 33.413 6.888 1.00 14.45 C
ATOM 16 O2 U B 12 19.289 33.566 7.555 1.00 13.02 O
ATOM 17 N3 U B 12 20.751 32.171 6.516 1.00 15.44 N
ATOM 18 C4 U B 12 21.886 31.891 5.792 1.00 15.57 C
ATOM 19 O4 U B 12 22.158 30.720 5.530 1.00 15.08 O
ATOM 20 C5 U B 12 22.643 33.043 5.398 1.00 15.31 C
ATOM 21 C6 U B 12 22.212 34.266 5.737 1.00 16.29 C
ATOM 22 P G B 13 22.774 37.533 10.678 1.00 17.18 P
ATOM 23 OP1 G B 13 23.271 38.771 11.334 1.00 17.26 O
ATOM 24 OP2 G B 13 23.696 36.378 10.491 1.00 18.90 O
ATOM 25 O5' G B 13 21.496 37.005 11.470 1.00 18.43 O
TER
ATOM 2 P G A 5 14.816 23.175 10.469 1.00 27.20 P
ATOM 3 OP1 G A 5 13.560 22.379 10.501 1.00 26.95 O
ATOM 4 OP2 G A 5 15.723 23.064 9.294 1.00 25.61 O
ATOM 5 O5' G A 5 14.429 24.712 10.618 1.00 26.44 O
ATOM 6 C5' G A 5 13.634 25.141 11.713 1.00 27.36 C
ATOM 7 C4' G A 5 13.539 26.648 11.752 1.00 27.48 C
ATOM 8 O4' G A 5 14.824 27.224 12.104 1.00 26.49 O
ATOM 9 C3' G A 5 13.192 27.350 10.454 1.00 28.78 C
ATOM 10 O3' G A 5 11.803 27.294 10.168 1.00 32.19 O
ATOM 11 C2' G A 5 13.627 28.774 10.768 1.00 26.45 C
ATOM 12 O2' G A 5 12.701 29.443 11.603 1.00 25.90 O
ATOM 13 C1' G A 5 14.928 28.520 11.530 1.00 25.37 C
ATOM 14 N9 G A 5 16.059 28.542 10.612 1.00 21.88 N
ATOM 15 C8 G A 5 16.721 27.467 10.059 1.00 21.46 C
ATOM 16 N7 G A 5 17.666 27.821 9.231 1.00 21.03 N
ATOM 17 C5 G A 5 17.629 29.213 9.242 1.00 19.17 C
ATOM 18 C6 G A 5 18.409 30.163 8.528 1.00 18.18 C
ATOM 19 O6 G A 5 19.327 29.959 7.725 1.00 16.65 O
ATOM 20 N1 G A 5 18.032 31.468 8.831 1.00 16.74 N
ATOM 21 C2 G A 5 17.037 31.820 9.714 1.00 16.96 C
ATOM 22 N2 G A 5 16.826 33.133 9.880 1.00 17.30 N
ATOM 23 N3 G A 5 16.304 30.945 10.387 1.00 17.90 N
ATOM 24 C4 G A 5 16.652 29.670 10.100 1.00 20.38 C
ATOM 25 P C A 6 11.278 27.817 8.752 1.00 38.62 P
ATOM 26 OP1 C A 6 9.800 27.992 8.831 1.00 39.63 O
ATOM 27 OP2 C A 6 11.856 26.922 7.717 1.00 34.06 O
ATOM 28 O5' C A 6 11.997 29.243 8.601 1.00 34.94 O
TER
ATOM 1 O3' G B 11 24.796 37.664 3.594 1.00 14.00 O
ATOM 2 P U B 12 25.328 37.164 5.033 1.00 16.15 P
ATOM 3 OP1 U B 12 26.141 38.273 5.596 1.00 14.18 O
ATOM 4 OP2 U B 12 25.925 35.823 4.879 1.00 16.07 O
ATOM 5 O5' U B 12 24.013 37.025 5.920 1.00 15.79 O
ATOM 6 C5' U B 12 23.209 38.159 6.199 1.00 14.28 C
ATOM 7 C4' U B 12 21.928 37.726 6.865 1.00 14.67 C
ATOM 8 O4' U B 12 21.279 36.753 6.010 1.00 15.19 O
ATOM 9 C3' U B 12 22.093 37.004 8.192 1.00 14.68 C
ATOM 10 O3' U B 12 22.185 37.959 9.242 1.00 16.36 O
ATOM 11 C2' U B 12 20.807 36.187 8.277 1.00 16.09 C
ATOM 12 O2' U B 12 19.706 36.925 8.778 1.00 14.55 O
ATOM 13 C1' U B 12 20.582 35.816 6.808 1.00 14.14 C
ATOM 14 N1 U B 12 21.059 34.470 6.462 1.00 14.99 N
ATOM 15 C2 U B 12 20.294 33.413 6.888 1.00 14.45 C
ATOM 16 O2 U B 12 19.289 33.566 7.555 1.00 13.02 O
ATOM 17 N3 U B 12 20.751 32.171 6.516 1.00 15.44 N
ATOM 18 C4 U B 12 21.886 31.891 5.792 1.00 15.57 C
ATOM 19 O4 U B 12 22.158 30.720 5.530 1.00 15.08 O
ATOM 20 C5 U B 12 22.643 33.043 5.398 1.00 15.31 C
ATOM 21 C6 U B 12 22.212 34.266 5.737 1.00 16.29 C
ATOM 22 P G B 13 22.774 37.533 10.678 1.00 17.18 P
ATOM 23 OP1 G B 13 23.271 38.771 11.334 1.00 17.26 O
ATOM 24 OP2 G B 13 23.696 36.378 10.491 1.00 18.90 O
ATOM 25 O5' G B 13 21.496 37.005 11.470 1.00 18.43 O
TER
Atoms:
OP1: (13.560,22.379,10.501)
OP2: (15.723,23.064,9.294)
C3': (13.192,27.350,10.454)
C1': (14.928,28.520,11.530)
C5': (13.634,25.141,11.713)
O6: (19.327,29.959,7.725)
O4': (14.824,27.224,12.104)
C8: (16.721,27.467,10.059)
C2: (17.037,31.820,9.714)
C6: (18.409,30.163,8.528)
C5: (17.629,29.213,9.242)
C4: (16.652,29.670,10.100)
P: (14.816,23.175,10.469)
C4': (13.539,26.648,11.752)
C2': (13.627,28.774,10.768)
O2': (12.701,29.443,11.603)
N1: (18.032,31.468,8.831)
N2: (16.826,33.133,9.880)
N3: (16.304,30.945,10.387)
N7: (17.666,27.821,9.231)
N9: (16.059,28.542,10.612)
O5': (14.429,24.712,10.618)
O3': (11.803,27.294,10.168)
OP2: (15.723,23.064,9.294)
C3': (13.192,27.350,10.454)
C1': (14.928,28.520,11.530)
C5': (13.634,25.141,11.713)
O6: (19.327,29.959,7.725)
O4': (14.824,27.224,12.104)
C8: (16.721,27.467,10.059)
C2: (17.037,31.820,9.714)
C6: (18.409,30.163,8.528)
C5: (17.629,29.213,9.242)
C4: (16.652,29.670,10.100)
P: (14.816,23.175,10.469)
C4': (13.539,26.648,11.752)
C2': (13.627,28.774,10.768)
O2': (12.701,29.443,11.603)
N1: (18.032,31.468,8.831)
N2: (16.826,33.133,9.880)
N3: (16.304,30.945,10.387)
N7: (17.666,27.821,9.231)
N9: (16.059,28.542,10.612)
O5': (14.429,24.712,10.618)
O3': (11.803,27.294,10.168)
C4: (21.886,31.891,5.792)
N3: (20.751,32.171,6.516)
OP1: (26.141,38.273,5.596)
OP2: (25.925,35.823,4.879)
C2: (20.294,33.413,6.888)
C1': (20.582,35.816,6.808)
C3': (22.093,37.004,8.192)
O5': (24.013,37.025,5.920)
O4': (21.279,36.753,6.010)
C5': (23.209,38.159,6.199)
P: (25.328,37.164,5.033)
C4': (21.928,37.726,6.865)
C2': (20.807,36.187,8.277)
O2': (19.706,36.925,8.778)
N1: (21.059,34.470,6.462)
O4: (22.158,30.720,5.530)
O2: (19.289,33.566,7.555)
C6: (22.212,34.266,5.737)
C5: (22.643,33.043,5.398)
O3': (22.185,37.959,9.242)
N3: (20.751,32.171,6.516)
OP1: (26.141,38.273,5.596)
OP2: (25.925,35.823,4.879)
C2: (20.294,33.413,6.888)
C1': (20.582,35.816,6.808)
C3': (22.093,37.004,8.192)
O5': (24.013,37.025,5.920)
O4': (21.279,36.753,6.010)
C5': (23.209,38.159,6.199)
P: (25.328,37.164,5.033)
C4': (21.928,37.726,6.865)
C2': (20.807,36.187,8.277)
O2': (19.706,36.925,8.778)
N1: (21.059,34.470,6.462)
O4: (22.158,30.720,5.530)
O2: (19.289,33.566,7.555)
C6: (22.212,34.266,5.737)
C5: (22.643,33.043,5.398)
O3': (22.185,37.959,9.242)
Image (generated by PyMOL):