Doublet info:
Details
Nucleotide types:
GG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3PDR:A51:A61
Extra
PDB:
ATOM 1 O3' U A 50 -10.796 55.681 9.962 1.00 48.80 O
ATOM 2 P G A 51 -10.803 54.098 9.651 1.00 55.33 P
ATOM 3 OP1 G A 51 -12.037 53.833 8.867 1.00 56.99 O
ATOM 4 OP2 G A 51 -10.607 53.410 10.952 1.00 51.68 O
ATOM 5 O5' G A 51 -9.506 53.869 8.756 1.00 43.12 O
ATOM 6 C5' G A 51 -9.315 54.551 7.530 1.00 41.23 C
ATOM 7 C4' G A 51 -7.995 54.166 6.924 1.00 37.40 C
ATOM 8 O4' G A 51 -6.935 54.507 7.854 1.00 38.04 O
ATOM 9 C3' G A 51 -7.796 52.680 6.671 1.00 36.01 C
ATOM 10 O3' G A 51 -8.387 52.248 5.458 1.00 35.78 O
ATOM 11 C2' G A 51 -6.279 52.539 6.697 1.00 34.96 C
ATOM 12 O2' G A 51 -5.706 53.045 5.498 1.00 35.14 O
ATOM 13 C1' G A 51 -5.922 53.525 7.805 1.00 34.43 C
ATOM 14 N9 G A 51 -5.804 52.903 9.138 1.00 32.62 N
ATOM 15 C8 G A 51 -6.654 53.047 10.203 1.00 33.63 C
ATOM 16 N7 G A 51 -6.250 52.392 11.257 1.00 35.21 N
ATOM 17 C5 G A 51 -5.056 51.789 10.869 1.00 28.13 C
ATOM 18 C6 G A 51 -4.153 50.949 11.583 1.00 29.39 C
ATOM 19 O6 G A 51 -4.225 50.555 12.752 1.00 28.11 O
ATOM 20 N1 G A 51 -3.069 50.567 10.805 1.00 27.93 N
ATOM 21 C2 G A 51 -2.875 50.940 9.500 1.00 29.89 C
ATOM 22 N2 G A 51 -1.765 50.472 8.898 1.00 26.82 N
ATOM 23 N3 G A 51 -3.712 51.716 8.824 1.00 30.19 N
ATOM 24 C4 G A 51 -4.767 52.105 9.566 1.00 30.52 C
ATOM 25 P U A 52 -9.124 50.829 5.305 1.00 37.51 P
ATOM 26 OP1 U A 52 -9.769 50.894 3.972 1.00 42.16 O
ATOM 27 OP2 U A 52 -9.928 50.540 6.515 1.00 42.25 O
ATOM 28 O5' U A 52 -7.925 49.799 5.217 1.00 31.82 O
TER
ATOM 1 O3' C B 60 5.180 49.397 11.582 1.00 29.53 O
ATOM 2 P G B 61 5.324 50.927 12.077 1.00 27.31 P
ATOM 3 OP1 G B 61 6.678 51.284 11.587 1.00 27.95 O
ATOM 4 OP2 G B 61 5.008 50.975 13.519 1.00 27.79 O
ATOM 5 O5' G B 61 4.178 51.707 11.278 1.00 25.05 O
ATOM 6 C5' G B 61 4.154 51.757 9.859 1.00 25.74 C
ATOM 7 C4' G B 61 2.939 52.491 9.339 1.00 27.50 C
ATOM 8 O4' G B 61 1.723 51.773 9.677 1.00 25.87 O
ATOM 9 C3' G B 61 2.704 53.887 9.892 1.00 25.59 C
ATOM 10 O3' G B 61 3.516 54.858 9.252 1.00 27.59 O
ATOM 11 C2' G B 61 1.218 54.077 9.626 1.00 30.35 C
ATOM 12 O2' G B 61 1.027 54.346 8.244 1.00 32.71 O
ATOM 13 C1' G B 61 0.665 52.677 9.908 1.00 27.10 C
ATOM 14 N9 G B 61 0.201 52.508 11.301 1.00 28.16 N
ATOM 15 C8 G B 61 0.855 51.814 12.293 1.00 27.97 C
ATOM 16 N7 G B 61 0.214 51.827 13.429 1.00 31.38 N
ATOM 17 C5 G B 61 -0.927 52.580 13.180 1.00 29.96 C
ATOM 18 C6 G B 61 -2.000 52.941 14.044 1.00 31.49 C
ATOM 19 O6 G B 61 -2.139 52.657 15.242 1.00 34.70 O
ATOM 20 N1 G B 61 -2.958 53.711 13.392 1.00 29.73 N
ATOM 21 C2 G B 61 -2.884 54.089 12.074 1.00 34.36 C
ATOM 22 N2 G B 61 -3.898 54.834 11.595 1.00 32.89 N
ATOM 23 N3 G B 61 -1.887 53.753 11.267 1.00 32.40 N
ATOM 24 C4 G B 61 -0.951 53.000 11.875 1.00 28.75 C
ATOM 25 P C B 62 4.166 56.101 10.048 1.00 28.79 P
ATOM 26 OP1 C B 62 4.996 56.836 9.060 1.00 32.83 O
ATOM 27 OP2 C B 62 4.782 55.582 11.290 1.00 25.51 O
ATOM 28 O5' C B 62 2.903 56.977 10.454 1.00 31.56 O
TER
ATOM 2 P G A 51 -10.803 54.098 9.651 1.00 55.33 P
ATOM 3 OP1 G A 51 -12.037 53.833 8.867 1.00 56.99 O
ATOM 4 OP2 G A 51 -10.607 53.410 10.952 1.00 51.68 O
ATOM 5 O5' G A 51 -9.506 53.869 8.756 1.00 43.12 O
ATOM 6 C5' G A 51 -9.315 54.551 7.530 1.00 41.23 C
ATOM 7 C4' G A 51 -7.995 54.166 6.924 1.00 37.40 C
ATOM 8 O4' G A 51 -6.935 54.507 7.854 1.00 38.04 O
ATOM 9 C3' G A 51 -7.796 52.680 6.671 1.00 36.01 C
ATOM 10 O3' G A 51 -8.387 52.248 5.458 1.00 35.78 O
ATOM 11 C2' G A 51 -6.279 52.539 6.697 1.00 34.96 C
ATOM 12 O2' G A 51 -5.706 53.045 5.498 1.00 35.14 O
ATOM 13 C1' G A 51 -5.922 53.525 7.805 1.00 34.43 C
ATOM 14 N9 G A 51 -5.804 52.903 9.138 1.00 32.62 N
ATOM 15 C8 G A 51 -6.654 53.047 10.203 1.00 33.63 C
ATOM 16 N7 G A 51 -6.250 52.392 11.257 1.00 35.21 N
ATOM 17 C5 G A 51 -5.056 51.789 10.869 1.00 28.13 C
ATOM 18 C6 G A 51 -4.153 50.949 11.583 1.00 29.39 C
ATOM 19 O6 G A 51 -4.225 50.555 12.752 1.00 28.11 O
ATOM 20 N1 G A 51 -3.069 50.567 10.805 1.00 27.93 N
ATOM 21 C2 G A 51 -2.875 50.940 9.500 1.00 29.89 C
ATOM 22 N2 G A 51 -1.765 50.472 8.898 1.00 26.82 N
ATOM 23 N3 G A 51 -3.712 51.716 8.824 1.00 30.19 N
ATOM 24 C4 G A 51 -4.767 52.105 9.566 1.00 30.52 C
ATOM 25 P U A 52 -9.124 50.829 5.305 1.00 37.51 P
ATOM 26 OP1 U A 52 -9.769 50.894 3.972 1.00 42.16 O
ATOM 27 OP2 U A 52 -9.928 50.540 6.515 1.00 42.25 O
ATOM 28 O5' U A 52 -7.925 49.799 5.217 1.00 31.82 O
TER
ATOM 1 O3' C B 60 5.180 49.397 11.582 1.00 29.53 O
ATOM 2 P G B 61 5.324 50.927 12.077 1.00 27.31 P
ATOM 3 OP1 G B 61 6.678 51.284 11.587 1.00 27.95 O
ATOM 4 OP2 G B 61 5.008 50.975 13.519 1.00 27.79 O
ATOM 5 O5' G B 61 4.178 51.707 11.278 1.00 25.05 O
ATOM 6 C5' G B 61 4.154 51.757 9.859 1.00 25.74 C
ATOM 7 C4' G B 61 2.939 52.491 9.339 1.00 27.50 C
ATOM 8 O4' G B 61 1.723 51.773 9.677 1.00 25.87 O
ATOM 9 C3' G B 61 2.704 53.887 9.892 1.00 25.59 C
ATOM 10 O3' G B 61 3.516 54.858 9.252 1.00 27.59 O
ATOM 11 C2' G B 61 1.218 54.077 9.626 1.00 30.35 C
ATOM 12 O2' G B 61 1.027 54.346 8.244 1.00 32.71 O
ATOM 13 C1' G B 61 0.665 52.677 9.908 1.00 27.10 C
ATOM 14 N9 G B 61 0.201 52.508 11.301 1.00 28.16 N
ATOM 15 C8 G B 61 0.855 51.814 12.293 1.00 27.97 C
ATOM 16 N7 G B 61 0.214 51.827 13.429 1.00 31.38 N
ATOM 17 C5 G B 61 -0.927 52.580 13.180 1.00 29.96 C
ATOM 18 C6 G B 61 -2.000 52.941 14.044 1.00 31.49 C
ATOM 19 O6 G B 61 -2.139 52.657 15.242 1.00 34.70 O
ATOM 20 N1 G B 61 -2.958 53.711 13.392 1.00 29.73 N
ATOM 21 C2 G B 61 -2.884 54.089 12.074 1.00 34.36 C
ATOM 22 N2 G B 61 -3.898 54.834 11.595 1.00 32.89 N
ATOM 23 N3 G B 61 -1.887 53.753 11.267 1.00 32.40 N
ATOM 24 C4 G B 61 -0.951 53.000 11.875 1.00 28.75 C
ATOM 25 P C B 62 4.166 56.101 10.048 1.00 28.79 P
ATOM 26 OP1 C B 62 4.996 56.836 9.060 1.00 32.83 O
ATOM 27 OP2 C B 62 4.782 55.582 11.290 1.00 25.51 O
ATOM 28 O5' C B 62 2.903 56.977 10.454 1.00 31.56 O
TER
Atoms:
OP1: (-12.037,53.833,8.867)
OP2: (-10.607,53.410,10.952)
C3': (-7.796,52.680,6.671)
C1': (-5.922,53.525,7.805)
C5': (-9.315,54.551,7.530)
O6: (-4.225,50.555,12.752)
O4': (-6.935,54.507,7.854)
C8: (-6.654,53.047,10.203)
C2: (-2.875,50.940,9.500)
C6: (-4.153,50.949,11.583)
C5: (-5.056,51.789,10.869)
C4: (-4.767,52.105,9.566)
P: (-10.803,54.098,9.651)
C4': (-7.995,54.166,6.924)
C2': (-6.279,52.539,6.697)
O2': (-5.706,53.045,5.498)
N1: (-3.069,50.567,10.805)
N2: (-1.765,50.472,8.898)
N3: (-3.712,51.716,8.824)
N7: (-6.250,52.392,11.257)
N9: (-5.804,52.903,9.138)
O5': (-9.506,53.869,8.756)
O3': (-8.387,52.248,5.458)
OP2: (-10.607,53.410,10.952)
C3': (-7.796,52.680,6.671)
C1': (-5.922,53.525,7.805)
C5': (-9.315,54.551,7.530)
O6: (-4.225,50.555,12.752)
O4': (-6.935,54.507,7.854)
C8: (-6.654,53.047,10.203)
C2: (-2.875,50.940,9.500)
C6: (-4.153,50.949,11.583)
C5: (-5.056,51.789,10.869)
C4: (-4.767,52.105,9.566)
P: (-10.803,54.098,9.651)
C4': (-7.995,54.166,6.924)
C2': (-6.279,52.539,6.697)
O2': (-5.706,53.045,5.498)
N1: (-3.069,50.567,10.805)
N2: (-1.765,50.472,8.898)
N3: (-3.712,51.716,8.824)
N7: (-6.250,52.392,11.257)
N9: (-5.804,52.903,9.138)
O5': (-9.506,53.869,8.756)
O3': (-8.387,52.248,5.458)
OP1: (6.678,51.284,11.587)
OP2: (5.008,50.975,13.519)
C3': (2.704,53.887,9.892)
C1': (0.665,52.677,9.908)
C5': (4.154,51.757,9.859)
O6: (-2.139,52.657,15.242)
O4': (1.723,51.773,9.677)
C8: (0.855,51.814,12.293)
C2: (-2.884,54.089,12.074)
C6: (-2.000,52.941,14.044)
C5: (-0.927,52.580,13.180)
C4: (-0.951,53.000,11.875)
P: (5.324,50.927,12.077)
C4': (2.939,52.491,9.339)
C2': (1.218,54.077,9.626)
O2': (1.027,54.346,8.244)
N1: (-2.958,53.711,13.392)
N2: (-3.898,54.834,11.595)
N3: (-1.887,53.753,11.267)
N7: (0.214,51.827,13.429)
N9: (0.201,52.508,11.301)
O5': (4.178,51.707,11.278)
O3': (3.516,54.858,9.252)
OP2: (5.008,50.975,13.519)
C3': (2.704,53.887,9.892)
C1': (0.665,52.677,9.908)
C5': (4.154,51.757,9.859)
O6: (-2.139,52.657,15.242)
O4': (1.723,51.773,9.677)
C8: (0.855,51.814,12.293)
C2: (-2.884,54.089,12.074)
C6: (-2.000,52.941,14.044)
C5: (-0.927,52.580,13.180)
C4: (-0.951,53.000,11.875)
P: (5.324,50.927,12.077)
C4': (2.939,52.491,9.339)
C2': (1.218,54.077,9.626)
O2': (1.027,54.346,8.244)
N1: (-2.958,53.711,13.392)
N2: (-3.898,54.834,11.595)
N3: (-1.887,53.753,11.267)
N7: (0.214,51.827,13.429)
N9: (0.201,52.508,11.301)
O5': (4.178,51.707,11.278)
O3': (3.516,54.858,9.252)
Image (generated by PyMOL):