Doublet info:
Details
Nucleotide types:
GG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1O9M:A19:B2
Extra
PDB:
ATOM 1 O3' C A 18 8.271 -20.192 7.500 1.00 70.08 O
ATOM 2 P G A 19 9.452 -21.280 7.524 1.00 71.15 P
ATOM 3 OP1 G A 19 9.174 -22.285 6.462 1.00 72.10 O
ATOM 4 OP2 G A 19 9.627 -21.720 8.935 1.00 71.45 O
ATOM 5 O5' G A 19 10.745 -20.462 7.087 1.00 67.78 O
ATOM 6 C5' G A 19 10.850 -19.928 5.777 1.00 62.43 C
ATOM 7 C4' G A 19 12.078 -19.068 5.667 1.00 59.69 C
ATOM 8 O4' G A 19 11.962 -17.949 6.588 1.00 58.52 O
ATOM 9 C3' G A 19 13.379 -19.714 6.104 1.00 59.36 C
ATOM 10 O3' G A 19 13.897 -20.589 5.108 1.00 60.89 O
ATOM 11 C2' G A 19 14.257 -18.490 6.342 1.00 57.01 C
ATOM 12 O2' G A 19 14.728 -17.888 5.153 1.00 56.85 O
ATOM 13 C1' G A 19 13.259 -17.537 6.998 1.00 54.51 C
ATOM 14 N9 G A 19 13.339 -17.566 8.455 1.00 48.90 N
ATOM 15 C8 G A 19 12.487 -18.185 9.337 1.00 46.99 C
ATOM 16 N7 G A 19 12.852 -18.042 10.584 1.00 45.50 N
ATOM 17 C5 G A 19 14.010 -17.275 10.517 1.00 44.73 C
ATOM 18 C6 G A 19 14.866 -16.788 11.550 1.00 44.29 C
ATOM 19 O6 G A 19 14.763 -16.934 12.778 1.00 44.86 O
ATOM 20 N1 G A 19 15.933 -16.062 11.026 1.00 43.09 N
ATOM 21 C2 G A 19 16.146 -15.832 9.691 1.00 41.54 C
ATOM 22 N2 G A 19 17.225 -15.128 9.379 1.00 41.47 N
ATOM 23 N3 G A 19 15.359 -16.263 8.734 1.00 42.75 N
ATOM 24 C4 G A 19 14.319 -16.974 9.211 1.00 45.65 C
ATOM 25 P C A 20 14.946 -21.737 5.529 1.00 61.31 P
ATOM 26 OP1 C A 20 15.232 -22.540 4.307 1.00 61.72 O
ATOM 27 OP2 C A 20 14.421 -22.413 6.745 1.00 61.53 O
ATOM 28 O5' C A 20 16.265 -20.928 5.924 1.00 58.26 O
TER
ATOM 1 O3' C B 1 20.882 -8.989 12.316 1.00 70.99 O
ATOM 2 P G B 2 19.538 -8.094 12.424 1.00 72.32 P
ATOM 3 OP1 G B 2 19.906 -6.688 12.119 1.00 72.38 O
ATOM 4 OP2 G B 2 18.833 -8.408 13.701 1.00 72.08 O
ATOM 5 O5' G B 2 18.650 -8.618 11.208 1.00 68.78 O
ATOM 6 C5' G B 2 19.220 -8.740 9.914 1.00 64.23 C
ATOM 7 C4' G B 2 18.335 -9.573 9.031 1.00 61.88 C
ATOM 8 O4' G B 2 18.215 -10.922 9.555 1.00 59.53 O
ATOM 9 C3' G B 2 16.895 -9.120 8.963 1.00 61.75 C
ATOM 10 O3' G B 2 16.759 -7.973 8.139 1.00 65.26 O
ATOM 11 C2' G B 2 16.203 -10.367 8.423 1.00 59.85 C
ATOM 12 O2' G B 2 16.352 -10.578 7.033 1.00 60.16 O
ATOM 13 C1' G B 2 16.955 -11.462 9.176 1.00 56.35 C
ATOM 14 N9 G B 2 16.233 -11.876 10.372 1.00 51.90 N
ATOM 15 C8 G B 2 16.560 -11.633 11.686 1.00 50.27 C
ATOM 16 N7 G B 2 15.705 -12.148 12.527 1.00 48.35 N
ATOM 17 C5 G B 2 14.760 -12.765 11.719 1.00 47.46 C
ATOM 18 C6 G B 2 13.591 -13.492 12.059 1.00 46.65 C
ATOM 19 O6 G B 2 13.141 -13.745 13.179 1.00 44.07 O
ATOM 20 N1 G B 2 12.922 -13.943 10.925 1.00 46.36 N
ATOM 21 C2 G B 2 13.322 -13.720 9.631 1.00 46.83 C
ATOM 22 N2 G B 2 12.544 -14.235 8.669 1.00 45.87 N
ATOM 23 N3 G B 2 14.406 -13.041 9.303 1.00 47.20 N
ATOM 24 C4 G B 2 15.072 -12.599 10.388 1.00 48.45 C
ATOM 25 P U B 3 15.418 -7.095 8.230 1.00 66.38 P
ATOM 26 OP1 U B 3 15.690 -5.771 7.608 1.00 67.22 O
ATOM 27 OP2 U B 3 14.919 -7.159 9.632 1.00 66.08 O
ATOM 28 O5' U B 3 14.421 -7.911 7.294 1.00 65.15 O
TER
ATOM 2 P G A 19 9.452 -21.280 7.524 1.00 71.15 P
ATOM 3 OP1 G A 19 9.174 -22.285 6.462 1.00 72.10 O
ATOM 4 OP2 G A 19 9.627 -21.720 8.935 1.00 71.45 O
ATOM 5 O5' G A 19 10.745 -20.462 7.087 1.00 67.78 O
ATOM 6 C5' G A 19 10.850 -19.928 5.777 1.00 62.43 C
ATOM 7 C4' G A 19 12.078 -19.068 5.667 1.00 59.69 C
ATOM 8 O4' G A 19 11.962 -17.949 6.588 1.00 58.52 O
ATOM 9 C3' G A 19 13.379 -19.714 6.104 1.00 59.36 C
ATOM 10 O3' G A 19 13.897 -20.589 5.108 1.00 60.89 O
ATOM 11 C2' G A 19 14.257 -18.490 6.342 1.00 57.01 C
ATOM 12 O2' G A 19 14.728 -17.888 5.153 1.00 56.85 O
ATOM 13 C1' G A 19 13.259 -17.537 6.998 1.00 54.51 C
ATOM 14 N9 G A 19 13.339 -17.566 8.455 1.00 48.90 N
ATOM 15 C8 G A 19 12.487 -18.185 9.337 1.00 46.99 C
ATOM 16 N7 G A 19 12.852 -18.042 10.584 1.00 45.50 N
ATOM 17 C5 G A 19 14.010 -17.275 10.517 1.00 44.73 C
ATOM 18 C6 G A 19 14.866 -16.788 11.550 1.00 44.29 C
ATOM 19 O6 G A 19 14.763 -16.934 12.778 1.00 44.86 O
ATOM 20 N1 G A 19 15.933 -16.062 11.026 1.00 43.09 N
ATOM 21 C2 G A 19 16.146 -15.832 9.691 1.00 41.54 C
ATOM 22 N2 G A 19 17.225 -15.128 9.379 1.00 41.47 N
ATOM 23 N3 G A 19 15.359 -16.263 8.734 1.00 42.75 N
ATOM 24 C4 G A 19 14.319 -16.974 9.211 1.00 45.65 C
ATOM 25 P C A 20 14.946 -21.737 5.529 1.00 61.31 P
ATOM 26 OP1 C A 20 15.232 -22.540 4.307 1.00 61.72 O
ATOM 27 OP2 C A 20 14.421 -22.413 6.745 1.00 61.53 O
ATOM 28 O5' C A 20 16.265 -20.928 5.924 1.00 58.26 O
TER
ATOM 1 O3' C B 1 20.882 -8.989 12.316 1.00 70.99 O
ATOM 2 P G B 2 19.538 -8.094 12.424 1.00 72.32 P
ATOM 3 OP1 G B 2 19.906 -6.688 12.119 1.00 72.38 O
ATOM 4 OP2 G B 2 18.833 -8.408 13.701 1.00 72.08 O
ATOM 5 O5' G B 2 18.650 -8.618 11.208 1.00 68.78 O
ATOM 6 C5' G B 2 19.220 -8.740 9.914 1.00 64.23 C
ATOM 7 C4' G B 2 18.335 -9.573 9.031 1.00 61.88 C
ATOM 8 O4' G B 2 18.215 -10.922 9.555 1.00 59.53 O
ATOM 9 C3' G B 2 16.895 -9.120 8.963 1.00 61.75 C
ATOM 10 O3' G B 2 16.759 -7.973 8.139 1.00 65.26 O
ATOM 11 C2' G B 2 16.203 -10.367 8.423 1.00 59.85 C
ATOM 12 O2' G B 2 16.352 -10.578 7.033 1.00 60.16 O
ATOM 13 C1' G B 2 16.955 -11.462 9.176 1.00 56.35 C
ATOM 14 N9 G B 2 16.233 -11.876 10.372 1.00 51.90 N
ATOM 15 C8 G B 2 16.560 -11.633 11.686 1.00 50.27 C
ATOM 16 N7 G B 2 15.705 -12.148 12.527 1.00 48.35 N
ATOM 17 C5 G B 2 14.760 -12.765 11.719 1.00 47.46 C
ATOM 18 C6 G B 2 13.591 -13.492 12.059 1.00 46.65 C
ATOM 19 O6 G B 2 13.141 -13.745 13.179 1.00 44.07 O
ATOM 20 N1 G B 2 12.922 -13.943 10.925 1.00 46.36 N
ATOM 21 C2 G B 2 13.322 -13.720 9.631 1.00 46.83 C
ATOM 22 N2 G B 2 12.544 -14.235 8.669 1.00 45.87 N
ATOM 23 N3 G B 2 14.406 -13.041 9.303 1.00 47.20 N
ATOM 24 C4 G B 2 15.072 -12.599 10.388 1.00 48.45 C
ATOM 25 P U B 3 15.418 -7.095 8.230 1.00 66.38 P
ATOM 26 OP1 U B 3 15.690 -5.771 7.608 1.00 67.22 O
ATOM 27 OP2 U B 3 14.919 -7.159 9.632 1.00 66.08 O
ATOM 28 O5' U B 3 14.421 -7.911 7.294 1.00 65.15 O
TER
Atoms:
OP1: (9.174,-22.285,6.462)
OP2: (9.627,-21.720,8.935)
C3': (13.379,-19.714,6.104)
C1': (13.259,-17.537,6.998)
C5': (10.850,-19.928,5.777)
O6: (14.763,-16.934,12.778)
O4': (11.962,-17.949,6.588)
C8: (12.487,-18.185,9.337)
C2: (16.146,-15.832,9.691)
C6: (14.866,-16.788,11.550)
C5: (14.010,-17.275,10.517)
C4: (14.319,-16.974,9.211)
P: (9.452,-21.280,7.524)
C4': (12.078,-19.068,5.667)
C2': (14.257,-18.490,6.342)
O2': (14.728,-17.888,5.153)
N1: (15.933,-16.062,11.026)
N2: (17.225,-15.128,9.379)
N3: (15.359,-16.263,8.734)
N7: (12.852,-18.042,10.584)
N9: (13.339,-17.566,8.455)
O5': (10.745,-20.462,7.087)
O3': (13.897,-20.589,5.108)
OP2: (9.627,-21.720,8.935)
C3': (13.379,-19.714,6.104)
C1': (13.259,-17.537,6.998)
C5': (10.850,-19.928,5.777)
O6: (14.763,-16.934,12.778)
O4': (11.962,-17.949,6.588)
C8: (12.487,-18.185,9.337)
C2: (16.146,-15.832,9.691)
C6: (14.866,-16.788,11.550)
C5: (14.010,-17.275,10.517)
C4: (14.319,-16.974,9.211)
P: (9.452,-21.280,7.524)
C4': (12.078,-19.068,5.667)
C2': (14.257,-18.490,6.342)
O2': (14.728,-17.888,5.153)
N1: (15.933,-16.062,11.026)
N2: (17.225,-15.128,9.379)
N3: (15.359,-16.263,8.734)
N7: (12.852,-18.042,10.584)
N9: (13.339,-17.566,8.455)
O5': (10.745,-20.462,7.087)
O3': (13.897,-20.589,5.108)
OP1: (19.906,-6.688,12.119)
OP2: (18.833,-8.408,13.701)
C3': (16.895,-9.120,8.963)
C1': (16.955,-11.462,9.176)
C5': (19.220,-8.740,9.914)
O6: (13.141,-13.745,13.179)
O4': (18.215,-10.922,9.555)
C8: (16.560,-11.633,11.686)
C2: (13.322,-13.720,9.631)
C6: (13.591,-13.492,12.059)
C5: (14.760,-12.765,11.719)
C4: (15.072,-12.599,10.388)
P: (19.538,-8.094,12.424)
C4': (18.335,-9.573,9.031)
C2': (16.203,-10.367,8.423)
O2': (16.352,-10.578,7.033)
N1: (12.922,-13.943,10.925)
N2: (12.544,-14.235,8.669)
N3: (14.406,-13.041,9.303)
N7: (15.705,-12.148,12.527)
N9: (16.233,-11.876,10.372)
O5': (18.650,-8.618,11.208)
O3': (16.759,-7.973,8.139)
OP2: (18.833,-8.408,13.701)
C3': (16.895,-9.120,8.963)
C1': (16.955,-11.462,9.176)
C5': (19.220,-8.740,9.914)
O6: (13.141,-13.745,13.179)
O4': (18.215,-10.922,9.555)
C8: (16.560,-11.633,11.686)
C2: (13.322,-13.720,9.631)
C6: (13.591,-13.492,12.059)
C5: (14.760,-12.765,11.719)
C4: (15.072,-12.599,10.388)
P: (19.538,-8.094,12.424)
C4': (18.335,-9.573,9.031)
C2': (16.203,-10.367,8.423)
O2': (16.352,-10.578,7.033)
N1: (12.922,-13.943,10.925)
N2: (12.544,-14.235,8.669)
N3: (14.406,-13.041,9.303)
N7: (15.705,-12.148,12.527)
N9: (16.233,-11.876,10.372)
O5': (18.650,-8.618,11.208)
O3': (16.759,-7.973,8.139)
Image (generated by PyMOL):