Doublet info:
Details
Nucleotide types:
AC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:164:1268
Extra
PDB:
ATOM 1 O3' A A 63 54.767 -48.451 122.584 1.00 50.85 O
ATOM 2 P A A 64 53.696 -47.621 123.434 1.00 47.20 P
ATOM 3 OP1 A A 64 53.463 -46.343 122.749 1.00 46.64 O
ATOM 4 OP2 A A 64 54.217 -47.612 124.842 1.00 47.77 O
ATOM 5 O5' A A 64 52.389 -48.486 123.322 1.00 47.22 O
ATOM 6 C5' A A 64 51.961 -48.951 122.086 1.00 46.85 C
ATOM 7 C4' A A 64 51.530 -50.367 122.203 1.00 47.19 C
ATOM 8 O4' A A 64 50.444 -50.473 123.125 1.00 47.44 O
ATOM 9 C3' A A 64 51.024 -51.030 120.957 1.00 46.87 C
ATOM 10 O3' A A 64 52.109 -51.405 120.117 1.00 46.79 O
ATOM 11 C2' A A 64 50.221 -52.202 121.524 1.00 47.29 C
ATOM 12 O2' A A 64 51.062 -53.292 121.811 1.00 47.75 O
ATOM 13 C1' A A 64 49.709 -51.629 122.854 1.00 47.56 C
ATOM 14 N9 A A 64 48.288 -51.257 122.805 1.00 47.33 N
ATOM 15 C8 A A 64 47.773 -50.220 122.077 1.00 46.78 C
ATOM 16 N7 A A 64 46.474 -50.115 122.167 1.00 46.68 N
ATOM 17 C5 A A 64 46.104 -51.122 123.020 1.00 47.20 C
ATOM 18 C6 A A 64 44.828 -51.487 123.504 1.00 47.37 C
ATOM 19 N6 A A 64 43.676 -50.858 123.184 1.00 47.03 N
ATOM 20 N1 A A 64 44.784 -52.522 124.360 1.00 47.93 N
ATOM 21 C2 A A 64 45.962 -53.114 124.648 1.00 48.28 C
ATOM 22 N3 A A 64 47.218 -52.847 124.240 1.00 48.16 N
ATOM 23 C4 A A 64 47.214 -51.821 123.419 1.00 47.60 C
ATOM 24 P C A 65 51.902 -52.324 118.834 1.00 49.24 P
ATOM 25 OP1 C A 65 50.462 -52.322 118.509 1.00 49.00 O
ATOM 26 OP2 C A 65 52.550 -53.620 119.121 1.00 49.74 O
ATOM 27 O5' C A 65 52.718 -51.551 117.715 1.00 48.76 O
TER
ATOM 1 O3' U B 267 39.649 -44.453 125.184 1.00 50.39 O
ATOM 2 P C B 268 39.362 -44.684 123.654 1.00 56.90 P
ATOM 3 OP1 C B 268 40.469 -44.034 122.894 1.00 56.54 O
ATOM 4 OP2 C B 268 37.938 -44.241 123.383 1.00 56.66 O
ATOM 5 O5' C B 268 39.461 -46.275 123.545 1.00 57.19 O
ATOM 6 C5' C B 268 40.697 -46.925 123.336 1.00 57.32 C
ATOM 7 C4' C B 268 40.591 -48.395 123.592 1.00 57.73 C
ATOM 8 O4' C B 268 39.767 -48.631 124.750 1.00 58.16 O
ATOM 9 C3' C B 268 39.904 -49.212 122.528 1.00 57.52 C
ATOM 10 O3' C B 268 40.695 -49.412 121.375 1.00 57.21 O
ATOM 11 C2' C B 268 39.565 -50.484 123.287 1.00 58.07 C
ATOM 12 O2' C B 268 40.715 -51.313 123.471 1.00 58.39 O
ATOM 13 C1' C B 268 39.187 -49.913 124.649 1.00 58.40 C
ATOM 14 N1 C B 268 37.737 -49.802 124.827 1.00 58.38 N
ATOM 15 C2 C B 268 36.994 -50.986 124.800 1.00 58.63 C
ATOM 16 O2 C B 268 37.524 -52.083 124.626 1.00 58.85 O
ATOM 17 N3 C B 268 35.677 -50.944 124.977 1.00 58.64 N
ATOM 18 C4 C B 268 35.093 -49.781 125.193 1.00 58.42 C
ATOM 19 N4 C B 268 33.772 -49.847 125.364 1.00 58.47 N
ATOM 20 C5 C B 268 35.812 -48.545 125.223 1.00 58.17 C
ATOM 21 C6 C B 268 37.132 -48.600 125.044 1.00 58.16 C
ATOM 22 P G B 269 40.211 -48.817 119.950 1.00 56.26 P
ATOM 23 OP1 G B 269 41.319 -49.018 118.985 1.00 56.04 O
ATOM 24 OP2 G B 269 39.738 -47.444 120.191 1.00 56.01 O
ATOM 25 O5' G B 269 38.964 -49.779 119.582 1.00 56.32 O
TER
ATOM 2 P A A 64 53.696 -47.621 123.434 1.00 47.20 P
ATOM 3 OP1 A A 64 53.463 -46.343 122.749 1.00 46.64 O
ATOM 4 OP2 A A 64 54.217 -47.612 124.842 1.00 47.77 O
ATOM 5 O5' A A 64 52.389 -48.486 123.322 1.00 47.22 O
ATOM 6 C5' A A 64 51.961 -48.951 122.086 1.00 46.85 C
ATOM 7 C4' A A 64 51.530 -50.367 122.203 1.00 47.19 C
ATOM 8 O4' A A 64 50.444 -50.473 123.125 1.00 47.44 O
ATOM 9 C3' A A 64 51.024 -51.030 120.957 1.00 46.87 C
ATOM 10 O3' A A 64 52.109 -51.405 120.117 1.00 46.79 O
ATOM 11 C2' A A 64 50.221 -52.202 121.524 1.00 47.29 C
ATOM 12 O2' A A 64 51.062 -53.292 121.811 1.00 47.75 O
ATOM 13 C1' A A 64 49.709 -51.629 122.854 1.00 47.56 C
ATOM 14 N9 A A 64 48.288 -51.257 122.805 1.00 47.33 N
ATOM 15 C8 A A 64 47.773 -50.220 122.077 1.00 46.78 C
ATOM 16 N7 A A 64 46.474 -50.115 122.167 1.00 46.68 N
ATOM 17 C5 A A 64 46.104 -51.122 123.020 1.00 47.20 C
ATOM 18 C6 A A 64 44.828 -51.487 123.504 1.00 47.37 C
ATOM 19 N6 A A 64 43.676 -50.858 123.184 1.00 47.03 N
ATOM 20 N1 A A 64 44.784 -52.522 124.360 1.00 47.93 N
ATOM 21 C2 A A 64 45.962 -53.114 124.648 1.00 48.28 C
ATOM 22 N3 A A 64 47.218 -52.847 124.240 1.00 48.16 N
ATOM 23 C4 A A 64 47.214 -51.821 123.419 1.00 47.60 C
ATOM 24 P C A 65 51.902 -52.324 118.834 1.00 49.24 P
ATOM 25 OP1 C A 65 50.462 -52.322 118.509 1.00 49.00 O
ATOM 26 OP2 C A 65 52.550 -53.620 119.121 1.00 49.74 O
ATOM 27 O5' C A 65 52.718 -51.551 117.715 1.00 48.76 O
TER
ATOM 1 O3' U B 267 39.649 -44.453 125.184 1.00 50.39 O
ATOM 2 P C B 268 39.362 -44.684 123.654 1.00 56.90 P
ATOM 3 OP1 C B 268 40.469 -44.034 122.894 1.00 56.54 O
ATOM 4 OP2 C B 268 37.938 -44.241 123.383 1.00 56.66 O
ATOM 5 O5' C B 268 39.461 -46.275 123.545 1.00 57.19 O
ATOM 6 C5' C B 268 40.697 -46.925 123.336 1.00 57.32 C
ATOM 7 C4' C B 268 40.591 -48.395 123.592 1.00 57.73 C
ATOM 8 O4' C B 268 39.767 -48.631 124.750 1.00 58.16 O
ATOM 9 C3' C B 268 39.904 -49.212 122.528 1.00 57.52 C
ATOM 10 O3' C B 268 40.695 -49.412 121.375 1.00 57.21 O
ATOM 11 C2' C B 268 39.565 -50.484 123.287 1.00 58.07 C
ATOM 12 O2' C B 268 40.715 -51.313 123.471 1.00 58.39 O
ATOM 13 C1' C B 268 39.187 -49.913 124.649 1.00 58.40 C
ATOM 14 N1 C B 268 37.737 -49.802 124.827 1.00 58.38 N
ATOM 15 C2 C B 268 36.994 -50.986 124.800 1.00 58.63 C
ATOM 16 O2 C B 268 37.524 -52.083 124.626 1.00 58.85 O
ATOM 17 N3 C B 268 35.677 -50.944 124.977 1.00 58.64 N
ATOM 18 C4 C B 268 35.093 -49.781 125.193 1.00 58.42 C
ATOM 19 N4 C B 268 33.772 -49.847 125.364 1.00 58.47 N
ATOM 20 C5 C B 268 35.812 -48.545 125.223 1.00 58.17 C
ATOM 21 C6 C B 268 37.132 -48.600 125.044 1.00 58.16 C
ATOM 22 P G B 269 40.211 -48.817 119.950 1.00 56.26 P
ATOM 23 OP1 G B 269 41.319 -49.018 118.985 1.00 56.04 O
ATOM 24 OP2 G B 269 39.738 -47.444 120.191 1.00 56.01 O
ATOM 25 O5' G B 269 38.964 -49.779 119.582 1.00 56.32 O
TER
Atoms:
OP1: (53.463,-46.343,122.749)
OP2: (54.217,-47.612,124.842)
C3': (51.024,-51.030,120.957)
C1': (49.709,-51.629,122.854)
C5': (51.961,-48.951,122.086)
O4': (50.444,-50.473,123.125)
C8: (47.773,-50.220,122.077)
O2': (51.062,-53.292,121.811)
C6: (44.828,-51.487,123.504)
C5: (46.104,-51.122,123.020)
C4: (47.214,-51.821,123.419)
P: (53.696,-47.621,123.434)
C4': (51.530,-50.367,122.203)
C2': (50.221,-52.202,121.524)
C2: (45.962,-53.114,124.648)
N1: (44.784,-52.522,124.360)
N3: (47.218,-52.847,124.240)
N6: (43.676,-50.858,123.184)
N7: (46.474,-50.115,122.167)
N9: (48.288,-51.257,122.805)
O5': (52.389,-48.486,123.322)
O3': (52.109,-51.405,120.117)
OP2: (54.217,-47.612,124.842)
C3': (51.024,-51.030,120.957)
C1': (49.709,-51.629,122.854)
C5': (51.961,-48.951,122.086)
O4': (50.444,-50.473,123.125)
C8: (47.773,-50.220,122.077)
O2': (51.062,-53.292,121.811)
C6: (44.828,-51.487,123.504)
C5: (46.104,-51.122,123.020)
C4: (47.214,-51.821,123.419)
P: (53.696,-47.621,123.434)
C4': (51.530,-50.367,122.203)
C2': (50.221,-52.202,121.524)
C2: (45.962,-53.114,124.648)
N1: (44.784,-52.522,124.360)
N3: (47.218,-52.847,124.240)
N6: (43.676,-50.858,123.184)
N7: (46.474,-50.115,122.167)
N9: (48.288,-51.257,122.805)
O5': (52.389,-48.486,123.322)
O3': (52.109,-51.405,120.117)
C2: (36.994,-50.986,124.800)
OP1: (40.469,-44.034,122.894)
OP2: (37.938,-44.241,123.383)
C4: (35.093,-49.781,125.193)
O5': (39.461,-46.275,123.545)
C3': (39.904,-49.212,122.528)
C1': (39.187,-49.913,124.649)
O4': (39.767,-48.631,124.750)
C5': (40.697,-46.925,123.336)
P: (39.362,-44.684,123.654)
O2: (37.524,-52.083,124.626)
C4': (40.591,-48.395,123.592)
C2': (39.565,-50.484,123.287)
O2': (40.715,-51.313,123.471)
N1: (37.737,-49.802,124.827)
N3: (35.677,-50.944,124.977)
N4: (33.772,-49.847,125.364)
C6: (37.132,-48.600,125.044)
C5: (35.812,-48.545,125.223)
O3': (40.695,-49.412,121.375)
OP1: (40.469,-44.034,122.894)
OP2: (37.938,-44.241,123.383)
C4: (35.093,-49.781,125.193)
O5': (39.461,-46.275,123.545)
C3': (39.904,-49.212,122.528)
C1': (39.187,-49.913,124.649)
O4': (39.767,-48.631,124.750)
C5': (40.697,-46.925,123.336)
P: (39.362,-44.684,123.654)
O2: (37.524,-52.083,124.626)
C4': (40.591,-48.395,123.592)
C2': (39.565,-50.484,123.287)
O2': (40.715,-51.313,123.471)
N1: (37.737,-49.802,124.827)
N3: (35.677,-50.944,124.977)
N4: (33.772,-49.847,125.364)
C6: (37.132,-48.600,125.044)
C5: (35.812,-48.545,125.223)
O3': (40.695,-49.412,121.375)
Image (generated by PyMOL):