Doublet info:
Details
Nucleotide types:
GG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3B5S:B28:C2
Extra
PDB:
ATOM 1 O3' C A 27 39.039 -4.351 43.932 1.00 58.67 O
ATOM 2 P G A 28 40.339 -4.984 43.207 1.00 56.28 P
ATOM 3 OP1 G A 28 40.015 -6.448 43.216 1.00 64.56 O
ATOM 4 OP2 G A 28 41.629 -4.498 43.762 1.00 54.46 O
ATOM 5 O5' G A 28 40.259 -4.473 41.705 1.00 54.57 O
ATOM 6 C5' G A 28 39.169 -4.834 40.864 1.00 50.23 C
ATOM 7 C4' G A 28 39.306 -4.187 39.489 1.00 55.02 C
ATOM 8 O4' G A 28 39.006 -2.764 39.578 1.00 54.63 O
ATOM 9 C3' G A 28 40.677 -4.227 38.809 1.00 58.46 C
ATOM 10 O3' G A 28 40.951 -5.459 38.123 1.00 55.63 O
ATOM 11 C2' G A 28 40.541 -3.071 37.828 1.00 53.01 C
ATOM 12 O2' G A 28 39.669 -3.394 36.766 1.00 55.53 O
ATOM 13 C1' G A 28 39.816 -2.041 38.676 1.00 55.21 C
ATOM 14 N9 G A 28 40.762 -1.218 39.411 1.00 56.16 N
ATOM 15 C8 G A 28 41.158 -1.343 40.721 1.00 55.54 C
ATOM 16 N7 G A 28 42.041 -0.454 41.077 1.00 56.73 N
ATOM 17 C5 G A 28 42.228 0.312 39.931 1.00 57.26 C
ATOM 18 C6 G A 28 43.069 1.426 39.688 1.00 53.49 C
ATOM 19 O6 G A 28 43.828 2.004 40.473 1.00 51.74 O
ATOM 20 N1 G A 28 42.972 1.863 38.372 1.00 53.16 N
ATOM 21 C2 G A 28 42.169 1.306 37.411 1.00 55.65 C
ATOM 22 N2 G A 28 42.261 1.815 36.185 1.00 56.79 N
ATOM 23 N3 G A 28 41.356 0.302 37.629 1.00 55.11 N
ATOM 24 C4 G A 28 41.440 -0.151 38.899 1.00 56.83 C
ATOM 25 P A A 29 42.456 -6.033 38.018 1.00 60.91 P
ATOM 26 OP1 A A 29 42.251 -7.308 37.287 1.00 62.51 O
ATOM 27 OP2 A A 29 43.109 -6.038 39.330 1.00 53.41 O
ATOM 28 O5' A A 29 43.241 -4.973 37.123 1.00 56.18 O
TER
ATOM 1 O3' C B 1 43.111 9.054 33.835 1.00 47.76 O
ATOM 2 P G B 2 41.655 9.515 34.324 1.00 53.48 P
ATOM 3 OP1 G B 2 41.190 10.519 33.370 1.00 55.90 O
ATOM 4 OP2 G B 2 41.784 9.850 35.758 1.00 50.25 O
ATOM 5 O5' G B 2 40.715 8.245 34.167 1.00 53.10 O
ATOM 6 C5' G B 2 40.488 7.589 32.918 1.00 53.48 C
ATOM 7 C4' G B 2 39.803 6.266 33.172 1.00 52.57 C
ATOM 8 O4' G B 2 40.658 5.439 33.986 1.00 58.09 O
ATOM 9 C3' G B 2 38.529 6.376 33.976 1.00 54.29 C
ATOM 10 O3' G B 2 37.426 6.607 33.118 1.00 57.59 O
ATOM 11 C2' G B 2 38.433 5.010 34.640 1.00 51.31 C
ATOM 12 O2' G B 2 37.924 4.007 33.803 1.00 48.50 O
ATOM 13 C1' G B 2 39.892 4.708 34.914 1.00 51.80 C
ATOM 14 N9 G B 2 40.377 5.032 36.247 1.00 53.42 N
ATOM 15 C8 G B 2 41.230 6.051 36.586 1.00 55.04 C
ATOM 16 N7 G B 2 41.583 6.028 37.836 1.00 53.53 N
ATOM 17 C5 G B 2 40.907 4.942 38.367 1.00 53.64 C
ATOM 18 C6 G B 2 40.915 4.402 39.666 1.00 52.17 C
ATOM 19 O6 G B 2 41.568 4.795 40.648 1.00 53.20 O
ATOM 20 N1 G B 2 40.065 3.290 39.773 1.00 51.06 N
ATOM 21 C2 G B 2 39.323 2.755 38.742 1.00 52.19 C
ATOM 22 N2 G B 2 38.601 1.686 39.011 1.00 47.70 N
ATOM 23 N3 G B 2 39.303 3.248 37.532 1.00 51.16 N
ATOM 24 C4 G B 2 40.124 4.334 37.405 1.00 53.91 C
ATOM 25 P U B 3 36.119 7.321 33.677 1.00 59.74 P
ATOM 26 OP1 U B 3 35.147 7.484 32.553 1.00 63.60 O
ATOM 27 OP2 U B 3 36.600 8.491 34.429 1.00 57.36 O
ATOM 28 O5' U B 3 35.512 6.264 34.695 1.00 59.79 O
TER
ATOM 2 P G A 28 40.339 -4.984 43.207 1.00 56.28 P
ATOM 3 OP1 G A 28 40.015 -6.448 43.216 1.00 64.56 O
ATOM 4 OP2 G A 28 41.629 -4.498 43.762 1.00 54.46 O
ATOM 5 O5' G A 28 40.259 -4.473 41.705 1.00 54.57 O
ATOM 6 C5' G A 28 39.169 -4.834 40.864 1.00 50.23 C
ATOM 7 C4' G A 28 39.306 -4.187 39.489 1.00 55.02 C
ATOM 8 O4' G A 28 39.006 -2.764 39.578 1.00 54.63 O
ATOM 9 C3' G A 28 40.677 -4.227 38.809 1.00 58.46 C
ATOM 10 O3' G A 28 40.951 -5.459 38.123 1.00 55.63 O
ATOM 11 C2' G A 28 40.541 -3.071 37.828 1.00 53.01 C
ATOM 12 O2' G A 28 39.669 -3.394 36.766 1.00 55.53 O
ATOM 13 C1' G A 28 39.816 -2.041 38.676 1.00 55.21 C
ATOM 14 N9 G A 28 40.762 -1.218 39.411 1.00 56.16 N
ATOM 15 C8 G A 28 41.158 -1.343 40.721 1.00 55.54 C
ATOM 16 N7 G A 28 42.041 -0.454 41.077 1.00 56.73 N
ATOM 17 C5 G A 28 42.228 0.312 39.931 1.00 57.26 C
ATOM 18 C6 G A 28 43.069 1.426 39.688 1.00 53.49 C
ATOM 19 O6 G A 28 43.828 2.004 40.473 1.00 51.74 O
ATOM 20 N1 G A 28 42.972 1.863 38.372 1.00 53.16 N
ATOM 21 C2 G A 28 42.169 1.306 37.411 1.00 55.65 C
ATOM 22 N2 G A 28 42.261 1.815 36.185 1.00 56.79 N
ATOM 23 N3 G A 28 41.356 0.302 37.629 1.00 55.11 N
ATOM 24 C4 G A 28 41.440 -0.151 38.899 1.00 56.83 C
ATOM 25 P A A 29 42.456 -6.033 38.018 1.00 60.91 P
ATOM 26 OP1 A A 29 42.251 -7.308 37.287 1.00 62.51 O
ATOM 27 OP2 A A 29 43.109 -6.038 39.330 1.00 53.41 O
ATOM 28 O5' A A 29 43.241 -4.973 37.123 1.00 56.18 O
TER
ATOM 1 O3' C B 1 43.111 9.054 33.835 1.00 47.76 O
ATOM 2 P G B 2 41.655 9.515 34.324 1.00 53.48 P
ATOM 3 OP1 G B 2 41.190 10.519 33.370 1.00 55.90 O
ATOM 4 OP2 G B 2 41.784 9.850 35.758 1.00 50.25 O
ATOM 5 O5' G B 2 40.715 8.245 34.167 1.00 53.10 O
ATOM 6 C5' G B 2 40.488 7.589 32.918 1.00 53.48 C
ATOM 7 C4' G B 2 39.803 6.266 33.172 1.00 52.57 C
ATOM 8 O4' G B 2 40.658 5.439 33.986 1.00 58.09 O
ATOM 9 C3' G B 2 38.529 6.376 33.976 1.00 54.29 C
ATOM 10 O3' G B 2 37.426 6.607 33.118 1.00 57.59 O
ATOM 11 C2' G B 2 38.433 5.010 34.640 1.00 51.31 C
ATOM 12 O2' G B 2 37.924 4.007 33.803 1.00 48.50 O
ATOM 13 C1' G B 2 39.892 4.708 34.914 1.00 51.80 C
ATOM 14 N9 G B 2 40.377 5.032 36.247 1.00 53.42 N
ATOM 15 C8 G B 2 41.230 6.051 36.586 1.00 55.04 C
ATOM 16 N7 G B 2 41.583 6.028 37.836 1.00 53.53 N
ATOM 17 C5 G B 2 40.907 4.942 38.367 1.00 53.64 C
ATOM 18 C6 G B 2 40.915 4.402 39.666 1.00 52.17 C
ATOM 19 O6 G B 2 41.568 4.795 40.648 1.00 53.20 O
ATOM 20 N1 G B 2 40.065 3.290 39.773 1.00 51.06 N
ATOM 21 C2 G B 2 39.323 2.755 38.742 1.00 52.19 C
ATOM 22 N2 G B 2 38.601 1.686 39.011 1.00 47.70 N
ATOM 23 N3 G B 2 39.303 3.248 37.532 1.00 51.16 N
ATOM 24 C4 G B 2 40.124 4.334 37.405 1.00 53.91 C
ATOM 25 P U B 3 36.119 7.321 33.677 1.00 59.74 P
ATOM 26 OP1 U B 3 35.147 7.484 32.553 1.00 63.60 O
ATOM 27 OP2 U B 3 36.600 8.491 34.429 1.00 57.36 O
ATOM 28 O5' U B 3 35.512 6.264 34.695 1.00 59.79 O
TER
Atoms:
OP1: (40.015,-6.448,43.216)
OP2: (41.629,-4.498,43.762)
C3': (40.677,-4.227,38.809)
C1': (39.816,-2.041,38.676)
C5': (39.169,-4.834,40.864)
O6: (43.828,2.004,40.473)
O4': (39.006,-2.764,39.578)
C8: (41.158,-1.343,40.721)
C2: (42.169,1.306,37.411)
C6: (43.069,1.426,39.688)
C5: (42.228,0.312,39.931)
C4: (41.440,-0.151,38.899)
P: (40.339,-4.984,43.207)
C4': (39.306,-4.187,39.489)
C2': (40.541,-3.071,37.828)
O2': (39.669,-3.394,36.766)
N1: (42.972,1.863,38.372)
N2: (42.261,1.815,36.185)
N3: (41.356,0.302,37.629)
N7: (42.041,-0.454,41.077)
N9: (40.762,-1.218,39.411)
O5': (40.259,-4.473,41.705)
O3': (40.951,-5.459,38.123)
OP2: (41.629,-4.498,43.762)
C3': (40.677,-4.227,38.809)
C1': (39.816,-2.041,38.676)
C5': (39.169,-4.834,40.864)
O6: (43.828,2.004,40.473)
O4': (39.006,-2.764,39.578)
C8: (41.158,-1.343,40.721)
C2: (42.169,1.306,37.411)
C6: (43.069,1.426,39.688)
C5: (42.228,0.312,39.931)
C4: (41.440,-0.151,38.899)
P: (40.339,-4.984,43.207)
C4': (39.306,-4.187,39.489)
C2': (40.541,-3.071,37.828)
O2': (39.669,-3.394,36.766)
N1: (42.972,1.863,38.372)
N2: (42.261,1.815,36.185)
N3: (41.356,0.302,37.629)
N7: (42.041,-0.454,41.077)
N9: (40.762,-1.218,39.411)
O5': (40.259,-4.473,41.705)
O3': (40.951,-5.459,38.123)
OP1: (41.190,10.519,33.370)
OP2: (41.784,9.850,35.758)
C3': (38.529,6.376,33.976)
C1': (39.892,4.708,34.914)
C5': (40.488,7.589,32.918)
O6: (41.568,4.795,40.648)
O4': (40.658,5.439,33.986)
C8: (41.230,6.051,36.586)
C2: (39.323,2.755,38.742)
C6: (40.915,4.402,39.666)
C5: (40.907,4.942,38.367)
C4: (40.124,4.334,37.405)
P: (41.655,9.515,34.324)
C4': (39.803,6.266,33.172)
C2': (38.433,5.010,34.640)
O2': (37.924,4.007,33.803)
N1: (40.065,3.290,39.773)
N2: (38.601,1.686,39.011)
N3: (39.303,3.248,37.532)
N7: (41.583,6.028,37.836)
N9: (40.377,5.032,36.247)
O5': (40.715,8.245,34.167)
O3': (37.426,6.607,33.118)
OP2: (41.784,9.850,35.758)
C3': (38.529,6.376,33.976)
C1': (39.892,4.708,34.914)
C5': (40.488,7.589,32.918)
O6: (41.568,4.795,40.648)
O4': (40.658,5.439,33.986)
C8: (41.230,6.051,36.586)
C2: (39.323,2.755,38.742)
C6: (40.915,4.402,39.666)
C5: (40.907,4.942,38.367)
C4: (40.124,4.334,37.405)
P: (41.655,9.515,34.324)
C4': (39.803,6.266,33.172)
C2': (38.433,5.010,34.640)
O2': (37.924,4.007,33.803)
N1: (40.065,3.290,39.773)
N2: (38.601,1.686,39.011)
N3: (39.303,3.248,37.532)
N7: (41.583,6.028,37.836)
N9: (40.377,5.032,36.247)
O5': (40.715,8.245,34.167)
O3': (37.426,6.607,33.118)
Image (generated by PyMOL):