Doublet info:
Details
Nucleotide types:
GG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YRJ:A21:B3
Extra
PDB:
ATOM 1 O3' C A 20 30.825 -19.106 34.722 1.00 54.09 O
ATOM 2 P G A 21 31.248 -19.809 36.093 1.00 59.29 P
ATOM 3 OP1 G A 21 31.432 -21.244 35.759 1.00 61.05 O
ATOM 4 OP2 G A 21 30.309 -19.416 37.184 1.00 58.82 O
ATOM 5 O5' G A 21 32.666 -19.171 36.435 1.00 56.79 O
ATOM 6 C5' G A 21 33.821 -19.525 35.689 1.00 53.79 C
ATOM 7 C4' G A 21 35.010 -18.744 36.180 1.00 50.75 C
ATOM 8 O4' G A 21 34.751 -17.314 36.027 1.00 48.53 O
ATOM 9 C3' G A 21 35.289 -18.857 37.665 1.00 50.01 C
ATOM 10 O3' G A 21 35.923 -20.073 38.035 1.00 51.37 O
ATOM 11 C2' G A 21 36.181 -17.644 37.889 1.00 50.16 C
ATOM 12 O2' G A 21 37.514 -17.833 37.440 1.00 48.55 O
ATOM 13 C1' G A 21 35.458 -16.596 37.036 1.00 47.89 C
ATOM 14 N9 G A 21 34.517 -15.834 37.863 1.00 44.59 N
ATOM 15 C8 G A 21 33.167 -16.036 38.029 1.00 40.97 C
ATOM 16 N7 G A 21 32.635 -15.222 38.899 1.00 33.94 N
ATOM 17 C5 G A 21 33.686 -14.422 39.310 1.00 37.96 C
ATOM 18 C6 G A 21 33.717 -13.344 40.230 1.00 39.12 C
ATOM 19 O6 G A 21 32.785 -12.858 40.868 1.00 41.82 O
ATOM 20 N1 G A 21 34.994 -12.817 40.367 1.00 37.88 N
ATOM 21 C2 G A 21 36.097 -13.264 39.697 1.00 40.89 C
ATOM 22 N2 G A 21 37.245 -12.645 39.976 1.00 44.17 N
ATOM 23 N3 G A 21 36.081 -14.253 38.818 1.00 40.73 N
ATOM 24 C4 G A 21 34.850 -14.782 38.678 1.00 40.34 C
ATOM 25 P C A 22 35.909 -20.528 39.589 1.00 52.84 P
ATOM 26 OP1 C A 22 36.730 -21.772 39.741 1.00 51.66 O
ATOM 27 OP2 C A 22 34.489 -20.516 40.036 1.00 49.28 O
ATOM 28 O5' C A 22 36.749 -19.381 40.306 1.00 47.11 O
TER
ATOM 1 O3' C B 2 40.032 -5.839 42.037 1.00 46.58 O
ATOM 2 P G B 3 39.834 -5.383 40.519 1.00 46.32 P
ATOM 3 OP1 G B 3 40.885 -4.401 40.133 1.00 49.35 O
ATOM 4 OP2 G B 3 38.394 -5.064 40.268 1.00 44.22 O
ATOM 5 O5' G B 3 40.192 -6.724 39.768 1.00 48.13 O
ATOM 6 C5' G B 3 39.806 -6.895 38.436 1.00 50.00 C
ATOM 7 C4' G B 3 39.894 -8.332 38.052 1.00 47.44 C
ATOM 8 O4' G B 3 39.058 -9.154 38.912 1.00 44.79 O
ATOM 9 C3' G B 3 39.301 -8.494 36.685 1.00 48.26 C
ATOM 10 O3' G B 3 40.280 -8.099 35.737 1.00 55.13 O
ATOM 11 C2' G B 3 38.898 -9.961 36.679 1.00 46.74 C
ATOM 12 O2' G B 3 39.959 -10.851 36.402 1.00 47.73 O
ATOM 13 C1' G B 3 38.407 -10.138 38.118 1.00 43.40 C
ATOM 14 N9 G B 3 36.961 -9.964 38.228 1.00 39.07 N
ATOM 15 C8 G B 3 36.272 -8.969 38.884 1.00 38.61 C
ATOM 16 N7 G B 3 34.970 -9.096 38.786 1.00 34.53 N
ATOM 17 C5 G B 3 34.796 -10.238 38.012 1.00 33.19 C
ATOM 18 C6 G B 3 33.613 -10.867 37.554 1.00 31.31 C
ATOM 19 O6 G B 3 32.446 -10.528 37.720 1.00 29.23 O
ATOM 20 N1 G B 3 33.893 -12.004 36.829 1.00 31.84 N
ATOM 21 C2 G B 3 35.145 -12.485 36.563 1.00 35.39 C
ATOM 22 N2 G B 3 35.201 -13.642 35.868 1.00 38.16 N
ATOM 23 N3 G B 3 36.262 -11.893 36.955 1.00 34.36 N
ATOM 24 C4 G B 3 36.014 -10.788 37.672 1.00 35.27 C
ATOM 25 P U B 4 39.921 -6.967 34.637 1.00 61.56 P
ATOM 26 OP1 U B 4 41.226 -6.434 34.128 1.00 61.31 O
ATOM 27 OP2 U B 4 38.937 -6.032 35.237 1.00 58.96 O
ATOM 28 O5' U B 4 39.181 -7.806 33.498 1.00 58.09 O
TER
ATOM 2 P G A 21 31.248 -19.809 36.093 1.00 59.29 P
ATOM 3 OP1 G A 21 31.432 -21.244 35.759 1.00 61.05 O
ATOM 4 OP2 G A 21 30.309 -19.416 37.184 1.00 58.82 O
ATOM 5 O5' G A 21 32.666 -19.171 36.435 1.00 56.79 O
ATOM 6 C5' G A 21 33.821 -19.525 35.689 1.00 53.79 C
ATOM 7 C4' G A 21 35.010 -18.744 36.180 1.00 50.75 C
ATOM 8 O4' G A 21 34.751 -17.314 36.027 1.00 48.53 O
ATOM 9 C3' G A 21 35.289 -18.857 37.665 1.00 50.01 C
ATOM 10 O3' G A 21 35.923 -20.073 38.035 1.00 51.37 O
ATOM 11 C2' G A 21 36.181 -17.644 37.889 1.00 50.16 C
ATOM 12 O2' G A 21 37.514 -17.833 37.440 1.00 48.55 O
ATOM 13 C1' G A 21 35.458 -16.596 37.036 1.00 47.89 C
ATOM 14 N9 G A 21 34.517 -15.834 37.863 1.00 44.59 N
ATOM 15 C8 G A 21 33.167 -16.036 38.029 1.00 40.97 C
ATOM 16 N7 G A 21 32.635 -15.222 38.899 1.00 33.94 N
ATOM 17 C5 G A 21 33.686 -14.422 39.310 1.00 37.96 C
ATOM 18 C6 G A 21 33.717 -13.344 40.230 1.00 39.12 C
ATOM 19 O6 G A 21 32.785 -12.858 40.868 1.00 41.82 O
ATOM 20 N1 G A 21 34.994 -12.817 40.367 1.00 37.88 N
ATOM 21 C2 G A 21 36.097 -13.264 39.697 1.00 40.89 C
ATOM 22 N2 G A 21 37.245 -12.645 39.976 1.00 44.17 N
ATOM 23 N3 G A 21 36.081 -14.253 38.818 1.00 40.73 N
ATOM 24 C4 G A 21 34.850 -14.782 38.678 1.00 40.34 C
ATOM 25 P C A 22 35.909 -20.528 39.589 1.00 52.84 P
ATOM 26 OP1 C A 22 36.730 -21.772 39.741 1.00 51.66 O
ATOM 27 OP2 C A 22 34.489 -20.516 40.036 1.00 49.28 O
ATOM 28 O5' C A 22 36.749 -19.381 40.306 1.00 47.11 O
TER
ATOM 1 O3' C B 2 40.032 -5.839 42.037 1.00 46.58 O
ATOM 2 P G B 3 39.834 -5.383 40.519 1.00 46.32 P
ATOM 3 OP1 G B 3 40.885 -4.401 40.133 1.00 49.35 O
ATOM 4 OP2 G B 3 38.394 -5.064 40.268 1.00 44.22 O
ATOM 5 O5' G B 3 40.192 -6.724 39.768 1.00 48.13 O
ATOM 6 C5' G B 3 39.806 -6.895 38.436 1.00 50.00 C
ATOM 7 C4' G B 3 39.894 -8.332 38.052 1.00 47.44 C
ATOM 8 O4' G B 3 39.058 -9.154 38.912 1.00 44.79 O
ATOM 9 C3' G B 3 39.301 -8.494 36.685 1.00 48.26 C
ATOM 10 O3' G B 3 40.280 -8.099 35.737 1.00 55.13 O
ATOM 11 C2' G B 3 38.898 -9.961 36.679 1.00 46.74 C
ATOM 12 O2' G B 3 39.959 -10.851 36.402 1.00 47.73 O
ATOM 13 C1' G B 3 38.407 -10.138 38.118 1.00 43.40 C
ATOM 14 N9 G B 3 36.961 -9.964 38.228 1.00 39.07 N
ATOM 15 C8 G B 3 36.272 -8.969 38.884 1.00 38.61 C
ATOM 16 N7 G B 3 34.970 -9.096 38.786 1.00 34.53 N
ATOM 17 C5 G B 3 34.796 -10.238 38.012 1.00 33.19 C
ATOM 18 C6 G B 3 33.613 -10.867 37.554 1.00 31.31 C
ATOM 19 O6 G B 3 32.446 -10.528 37.720 1.00 29.23 O
ATOM 20 N1 G B 3 33.893 -12.004 36.829 1.00 31.84 N
ATOM 21 C2 G B 3 35.145 -12.485 36.563 1.00 35.39 C
ATOM 22 N2 G B 3 35.201 -13.642 35.868 1.00 38.16 N
ATOM 23 N3 G B 3 36.262 -11.893 36.955 1.00 34.36 N
ATOM 24 C4 G B 3 36.014 -10.788 37.672 1.00 35.27 C
ATOM 25 P U B 4 39.921 -6.967 34.637 1.00 61.56 P
ATOM 26 OP1 U B 4 41.226 -6.434 34.128 1.00 61.31 O
ATOM 27 OP2 U B 4 38.937 -6.032 35.237 1.00 58.96 O
ATOM 28 O5' U B 4 39.181 -7.806 33.498 1.00 58.09 O
TER
Atoms:
OP1: (31.432,-21.244,35.759)
OP2: (30.309,-19.416,37.184)
C3': (35.289,-18.857,37.665)
C1': (35.458,-16.596,37.036)
C5': (33.821,-19.525,35.689)
O6: (32.785,-12.858,40.868)
O4': (34.751,-17.314,36.027)
C8: (33.167,-16.036,38.029)
C2: (36.097,-13.264,39.697)
C6: (33.717,-13.344,40.230)
C5: (33.686,-14.422,39.310)
C4: (34.850,-14.782,38.678)
P: (31.248,-19.809,36.093)
C4': (35.010,-18.744,36.180)
C2': (36.181,-17.644,37.889)
O2': (37.514,-17.833,37.440)
N1: (34.994,-12.817,40.367)
N2: (37.245,-12.645,39.976)
N3: (36.081,-14.253,38.818)
N7: (32.635,-15.222,38.899)
N9: (34.517,-15.834,37.863)
O5': (32.666,-19.171,36.435)
O3': (35.923,-20.073,38.035)
OP2: (30.309,-19.416,37.184)
C3': (35.289,-18.857,37.665)
C1': (35.458,-16.596,37.036)
C5': (33.821,-19.525,35.689)
O6: (32.785,-12.858,40.868)
O4': (34.751,-17.314,36.027)
C8: (33.167,-16.036,38.029)
C2: (36.097,-13.264,39.697)
C6: (33.717,-13.344,40.230)
C5: (33.686,-14.422,39.310)
C4: (34.850,-14.782,38.678)
P: (31.248,-19.809,36.093)
C4': (35.010,-18.744,36.180)
C2': (36.181,-17.644,37.889)
O2': (37.514,-17.833,37.440)
N1: (34.994,-12.817,40.367)
N2: (37.245,-12.645,39.976)
N3: (36.081,-14.253,38.818)
N7: (32.635,-15.222,38.899)
N9: (34.517,-15.834,37.863)
O5': (32.666,-19.171,36.435)
O3': (35.923,-20.073,38.035)
OP1: (40.885,-4.401,40.133)
OP2: (38.394,-5.064,40.268)
C3': (39.301,-8.494,36.685)
C1': (38.407,-10.138,38.118)
C5': (39.806,-6.895,38.436)
O6: (32.446,-10.528,37.720)
O4': (39.058,-9.154,38.912)
C8: (36.272,-8.969,38.884)
C2: (35.145,-12.485,36.563)
C6: (33.613,-10.867,37.554)
C5: (34.796,-10.238,38.012)
C4: (36.014,-10.788,37.672)
P: (39.834,-5.383,40.519)
C4': (39.894,-8.332,38.052)
C2': (38.898,-9.961,36.679)
O2': (39.959,-10.851,36.402)
N1: (33.893,-12.004,36.829)
N2: (35.201,-13.642,35.868)
N3: (36.262,-11.893,36.955)
N7: (34.970,-9.096,38.786)
N9: (36.961,-9.964,38.228)
O5': (40.192,-6.724,39.768)
O3': (40.280,-8.099,35.737)
OP2: (38.394,-5.064,40.268)
C3': (39.301,-8.494,36.685)
C1': (38.407,-10.138,38.118)
C5': (39.806,-6.895,38.436)
O6: (32.446,-10.528,37.720)
O4': (39.058,-9.154,38.912)
C8: (36.272,-8.969,38.884)
C2: (35.145,-12.485,36.563)
C6: (33.613,-10.867,37.554)
C5: (34.796,-10.238,38.012)
C4: (36.014,-10.788,37.672)
P: (39.834,-5.383,40.519)
C4': (39.894,-8.332,38.052)
C2': (38.898,-9.961,36.679)
O2': (39.959,-10.851,36.402)
N1: (33.893,-12.004,36.829)
N2: (35.201,-13.642,35.868)
N3: (36.262,-11.893,36.955)
N7: (34.970,-9.096,38.786)
N9: (36.961,-9.964,38.228)
O5': (40.192,-6.724,39.768)
O3': (40.280,-8.099,35.737)
Image (generated by PyMOL):