Doublet info:
Details
Nucleotide types:
GG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3DVZ:A1:A26
Extra
PDB:
ATOM 1 P G A 1 -24.053 51.976 -9.089 0.50 27.87 P
ATOM 2 OP1 G A 1 -24.336 50.722 -8.358 0.50 27.88 O
ATOM 3 OP2 G A 1 -22.746 52.649 -8.918 0.50 30.99 O
ATOM 4 O5' G A 1 -24.280 51.722 -10.657 0.50 22.75 O
ATOM 5 C5' G A 1 -25.083 50.623 -11.095 0.52 20.66 C
ATOM 6 C4' G A 1 -25.724 50.874 -12.452 0.50 20.32 C
ATOM 7 O4' G A 1 -26.172 52.251 -12.514 0.58 22.08 O
ATOM 8 C3' G A 1 -24.828 50.687 -13.673 0.45 19.45 C
ATOM 9 O3' G A 1 -24.899 49.345 -14.145 0.34 15.30 O
ATOM 10 C2' G A 1 -25.462 51.629 -14.691 0.42 20.66 C
ATOM 11 O2' G A 1 -26.533 51.019 -15.386 0.51 21.41 O
ATOM 12 C1' G A 1 -25.991 52.763 -13.819 0.56 20.30 C
ATOM 13 N9 G A 1 -25.094 53.911 -13.747 0.51 19.31 N
ATOM 14 C8 G A 1 -24.443 54.390 -12.636 0.39 19.08 C
ATOM 15 N7 G A 1 -23.706 55.438 -12.879 0.50 19.74 N
ATOM 16 C5 G A 1 -23.880 55.667 -14.238 0.37 15.08 C
ATOM 17 C6 G A 1 -23.330 56.669 -15.071 0.55 17.78 C
ATOM 18 O6 G A 1 -22.554 57.583 -14.761 0.56 20.05 O
ATOM 19 N1 G A 1 -23.766 56.539 -16.387 0.46 15.20 N
ATOM 20 C2 G A 1 -24.625 55.567 -16.841 0.75 22.12 C
ATOM 21 N2 G A 1 -24.931 55.604 -18.145 0.37 17.16 N
ATOM 22 N3 G A 1 -25.148 54.622 -16.071 0.53 18.18 N
ATOM 23 C4 G A 1 -24.731 54.736 -14.787 0.56 17.44 C
ATOM 24 P C A 2 -23.642 48.662 -14.866 0.44 13.74 P
ATOM 25 OP1 C A 2 -24.043 47.288 -15.247 0.52 15.88 O
ATOM 26 OP2 C A 2 -22.463 48.871 -14.000 0.31 14.78 O
ATOM 27 O5' C A 2 -23.433 49.530 -16.194 0.37 14.08 O
TER
ATOM 1 O3' U B 25 -24.460 62.037 -21.878 1.00 18.32 O
ATOM 2 P G B 26 -25.751 62.778 -21.290 1.00 18.22 P
ATOM 3 OP1 G B 26 -26.612 63.139 -22.437 1.00 21.99 O
ATOM 4 OP2 G B 26 -25.296 63.828 -20.352 1.00 21.24 O
ATOM 5 O5' G B 26 -26.480 61.640 -20.436 1.00 15.25 O
ATOM 6 C5' G B 26 -27.133 60.580 -21.115 1.00 15.66 C
ATOM 7 C4' G B 26 -27.721 59.584 -20.136 1.00 14.52 C
ATOM 8 O4' G B 26 -26.665 58.997 -19.338 1.00 14.01 O
ATOM 9 C3' G B 26 -28.663 60.159 -19.090 1.00 13.87 C
ATOM 10 O3' G B 26 -29.950 60.396 -19.643 1.00 20.02 O
ATOM 11 C2' G B 26 -28.682 59.006 -18.095 1.00 15.07 C
ATOM 12 O2' G B 26 -29.515 57.946 -18.520 1.00 16.58 O
ATOM 13 C1' G B 26 -27.217 58.574 -18.106 1.00 13.84 C
ATOM 14 N9 G B 26 -26.471 59.186 -17.014 1.00 12.46 N
ATOM 15 C8 G B 26 -25.762 60.362 -17.044 1.00 11.42 C
ATOM 16 N7 G B 26 -25.208 60.659 -15.901 1.00 11.63 N
ATOM 17 C5 G B 26 -25.579 59.615 -15.064 1.00 10.96 C
ATOM 18 C6 G B 26 -25.279 59.390 -13.703 1.00 12.31 C
ATOM 19 O6 G B 26 -24.600 60.099 -12.948 1.00 13.06 O
ATOM 20 N1 G B 26 -25.856 58.211 -13.233 1.00 11.97 N
ATOM 21 C2 G B 26 -26.627 57.358 -13.988 1.00 13.06 C
ATOM 22 N2 G B 26 -27.099 56.267 -13.366 1.00 13.66 N
ATOM 23 N3 G B 26 -26.914 57.559 -15.267 1.00 12.28 N
ATOM 24 C4 G B 26 -26.358 58.702 -15.734 1.00 13.38 C
TER
ATOM 2 OP1 G A 1 -24.336 50.722 -8.358 0.50 27.88 O
ATOM 3 OP2 G A 1 -22.746 52.649 -8.918 0.50 30.99 O
ATOM 4 O5' G A 1 -24.280 51.722 -10.657 0.50 22.75 O
ATOM 5 C5' G A 1 -25.083 50.623 -11.095 0.52 20.66 C
ATOM 6 C4' G A 1 -25.724 50.874 -12.452 0.50 20.32 C
ATOM 7 O4' G A 1 -26.172 52.251 -12.514 0.58 22.08 O
ATOM 8 C3' G A 1 -24.828 50.687 -13.673 0.45 19.45 C
ATOM 9 O3' G A 1 -24.899 49.345 -14.145 0.34 15.30 O
ATOM 10 C2' G A 1 -25.462 51.629 -14.691 0.42 20.66 C
ATOM 11 O2' G A 1 -26.533 51.019 -15.386 0.51 21.41 O
ATOM 12 C1' G A 1 -25.991 52.763 -13.819 0.56 20.30 C
ATOM 13 N9 G A 1 -25.094 53.911 -13.747 0.51 19.31 N
ATOM 14 C8 G A 1 -24.443 54.390 -12.636 0.39 19.08 C
ATOM 15 N7 G A 1 -23.706 55.438 -12.879 0.50 19.74 N
ATOM 16 C5 G A 1 -23.880 55.667 -14.238 0.37 15.08 C
ATOM 17 C6 G A 1 -23.330 56.669 -15.071 0.55 17.78 C
ATOM 18 O6 G A 1 -22.554 57.583 -14.761 0.56 20.05 O
ATOM 19 N1 G A 1 -23.766 56.539 -16.387 0.46 15.20 N
ATOM 20 C2 G A 1 -24.625 55.567 -16.841 0.75 22.12 C
ATOM 21 N2 G A 1 -24.931 55.604 -18.145 0.37 17.16 N
ATOM 22 N3 G A 1 -25.148 54.622 -16.071 0.53 18.18 N
ATOM 23 C4 G A 1 -24.731 54.736 -14.787 0.56 17.44 C
ATOM 24 P C A 2 -23.642 48.662 -14.866 0.44 13.74 P
ATOM 25 OP1 C A 2 -24.043 47.288 -15.247 0.52 15.88 O
ATOM 26 OP2 C A 2 -22.463 48.871 -14.000 0.31 14.78 O
ATOM 27 O5' C A 2 -23.433 49.530 -16.194 0.37 14.08 O
TER
ATOM 1 O3' U B 25 -24.460 62.037 -21.878 1.00 18.32 O
ATOM 2 P G B 26 -25.751 62.778 -21.290 1.00 18.22 P
ATOM 3 OP1 G B 26 -26.612 63.139 -22.437 1.00 21.99 O
ATOM 4 OP2 G B 26 -25.296 63.828 -20.352 1.00 21.24 O
ATOM 5 O5' G B 26 -26.480 61.640 -20.436 1.00 15.25 O
ATOM 6 C5' G B 26 -27.133 60.580 -21.115 1.00 15.66 C
ATOM 7 C4' G B 26 -27.721 59.584 -20.136 1.00 14.52 C
ATOM 8 O4' G B 26 -26.665 58.997 -19.338 1.00 14.01 O
ATOM 9 C3' G B 26 -28.663 60.159 -19.090 1.00 13.87 C
ATOM 10 O3' G B 26 -29.950 60.396 -19.643 1.00 20.02 O
ATOM 11 C2' G B 26 -28.682 59.006 -18.095 1.00 15.07 C
ATOM 12 O2' G B 26 -29.515 57.946 -18.520 1.00 16.58 O
ATOM 13 C1' G B 26 -27.217 58.574 -18.106 1.00 13.84 C
ATOM 14 N9 G B 26 -26.471 59.186 -17.014 1.00 12.46 N
ATOM 15 C8 G B 26 -25.762 60.362 -17.044 1.00 11.42 C
ATOM 16 N7 G B 26 -25.208 60.659 -15.901 1.00 11.63 N
ATOM 17 C5 G B 26 -25.579 59.615 -15.064 1.00 10.96 C
ATOM 18 C6 G B 26 -25.279 59.390 -13.703 1.00 12.31 C
ATOM 19 O6 G B 26 -24.600 60.099 -12.948 1.00 13.06 O
ATOM 20 N1 G B 26 -25.856 58.211 -13.233 1.00 11.97 N
ATOM 21 C2 G B 26 -26.627 57.358 -13.988 1.00 13.06 C
ATOM 22 N2 G B 26 -27.099 56.267 -13.366 1.00 13.66 N
ATOM 23 N3 G B 26 -26.914 57.559 -15.267 1.00 12.28 N
ATOM 24 C4 G B 26 -26.358 58.702 -15.734 1.00 13.38 C
TER
Atoms:
OP1: (-24.336,50.722,-8.358)
OP2: (-22.746,52.649,-8.918)
C3': (-24.828,50.687,-13.673)
C1': (-25.991,52.763,-13.819)
C5': (-25.083,50.623,-11.095)
O6: (-22.554,57.583,-14.761)
O4': (-26.172,52.251,-12.514)
C8: (-24.443,54.390,-12.636)
C2: (-24.625,55.567,-16.841)
C6: (-23.330,56.669,-15.071)
C5: (-23.880,55.667,-14.238)
C4: (-24.731,54.736,-14.787)
P: (-24.053,51.976,-9.089)
C4': (-25.724,50.874,-12.452)
C2': (-25.462,51.629,-14.691)
O2': (-26.533,51.019,-15.386)
N1: (-23.766,56.539,-16.387)
N2: (-24.931,55.604,-18.145)
N3: (-25.148,54.622,-16.071)
N7: (-23.706,55.438,-12.879)
N9: (-25.094,53.911,-13.747)
O5': (-24.280,51.722,-10.657)
O3': (-24.899,49.345,-14.145)
OP2: (-22.746,52.649,-8.918)
C3': (-24.828,50.687,-13.673)
C1': (-25.991,52.763,-13.819)
C5': (-25.083,50.623,-11.095)
O6: (-22.554,57.583,-14.761)
O4': (-26.172,52.251,-12.514)
C8: (-24.443,54.390,-12.636)
C2: (-24.625,55.567,-16.841)
C6: (-23.330,56.669,-15.071)
C5: (-23.880,55.667,-14.238)
C4: (-24.731,54.736,-14.787)
P: (-24.053,51.976,-9.089)
C4': (-25.724,50.874,-12.452)
C2': (-25.462,51.629,-14.691)
O2': (-26.533,51.019,-15.386)
N1: (-23.766,56.539,-16.387)
N2: (-24.931,55.604,-18.145)
N3: (-25.148,54.622,-16.071)
N7: (-23.706,55.438,-12.879)
N9: (-25.094,53.911,-13.747)
O5': (-24.280,51.722,-10.657)
O3': (-24.899,49.345,-14.145)
OP1: (-26.612,63.139,-22.437)
OP2: (-25.296,63.828,-20.352)
C3': (-28.663,60.159,-19.090)
C1': (-27.217,58.574,-18.106)
C5': (-27.133,60.580,-21.115)
O6: (-24.600,60.099,-12.948)
O4': (-26.665,58.997,-19.338)
C8: (-25.762,60.362,-17.044)
C2: (-26.627,57.358,-13.988)
C6: (-25.279,59.390,-13.703)
C5: (-25.579,59.615,-15.064)
C4: (-26.358,58.702,-15.734)
P: (-25.751,62.778,-21.290)
C4': (-27.721,59.584,-20.136)
C2': (-28.682,59.006,-18.095)
O2': (-29.515,57.946,-18.520)
N1: (-25.856,58.211,-13.233)
N2: (-27.099,56.267,-13.366)
N3: (-26.914,57.559,-15.267)
N7: (-25.208,60.659,-15.901)
N9: (-26.471,59.186,-17.014)
O5': (-26.480,61.640,-20.436)
O3': (-29.950,60.396,-19.643)
OP2: (-25.296,63.828,-20.352)
C3': (-28.663,60.159,-19.090)
C1': (-27.217,58.574,-18.106)
C5': (-27.133,60.580,-21.115)
O6: (-24.600,60.099,-12.948)
O4': (-26.665,58.997,-19.338)
C8: (-25.762,60.362,-17.044)
C2: (-26.627,57.358,-13.988)
C6: (-25.279,59.390,-13.703)
C5: (-25.579,59.615,-15.064)
C4: (-26.358,58.702,-15.734)
P: (-25.751,62.778,-21.290)
C4': (-27.721,59.584,-20.136)
C2': (-28.682,59.006,-18.095)
O2': (-29.515,57.946,-18.520)
N1: (-25.856,58.211,-13.233)
N2: (-27.099,56.267,-13.366)
N3: (-26.914,57.559,-15.267)
N7: (-25.208,60.659,-15.901)
N9: (-26.471,59.186,-17.014)
O5': (-26.480,61.640,-20.436)
O3': (-29.950,60.396,-19.643)
Image (generated by PyMOL):