Doublet info:
Details
Nucleotide types:
GG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3NDB:M40:M44
Extra
PDB:
ATOM 1 O3' U A 39 -59.883 30.099 -25.404 1.00 54.61 O
ATOM 2 P G A 40 -59.212 29.509 -24.102 1.00 52.33 P
ATOM 3 OP1 G A 40 -60.313 29.539 -23.100 1.00 47.94 O
ATOM 4 OP2 G A 40 -57.853 30.093 -24.000 1.00 49.32 O
ATOM 5 O5' G A 40 -58.942 27.971 -24.509 1.00 52.63 O
ATOM 6 C5' G A 40 -58.737 27.001 -23.554 1.00 51.98 C
ATOM 7 C4' G A 40 -57.605 26.146 -24.046 1.00 53.00 C
ATOM 8 O4' G A 40 -56.932 26.813 -25.102 1.00 52.33 O
ATOM 9 C3' G A 40 -56.414 25.971 -23.130 1.00 55.47 C
ATOM 10 O3' G A 40 -56.728 25.227 -21.924 1.00 56.98 O
ATOM 11 C2' G A 40 -55.461 25.266 -24.086 1.00 55.22 C
ATOM 12 O2' G A 40 -55.763 23.888 -24.261 1.00 57.42 O
ATOM 13 C1' G A 40 -55.723 26.102 -25.335 1.00 56.14 C
ATOM 14 N9 G A 40 -54.711 27.120 -25.530 1.00 55.76 N
ATOM 15 C8 G A 40 -54.972 28.459 -25.531 1.00 57.43 C
ATOM 16 N7 G A 40 -53.936 29.213 -25.718 1.00 57.14 N
ATOM 17 C5 G A 40 -52.922 28.285 -25.818 1.00 56.40 C
ATOM 18 C6 G A 40 -51.561 28.538 -26.026 1.00 56.87 C
ATOM 19 O6 G A 40 -51.051 29.676 -26.139 1.00 57.46 O
ATOM 20 N1 G A 40 -50.829 27.361 -26.113 1.00 55.97 N
ATOM 21 C2 G A 40 -51.374 26.103 -26.007 1.00 56.73 C
ATOM 22 N2 G A 40 -50.548 25.047 -26.120 1.00 56.75 N
ATOM 23 N3 G A 40 -52.659 25.881 -25.808 1.00 58.09 N
ATOM 24 C4 G A 40 -53.373 27.009 -25.725 1.00 55.56 C
ATOM 25 P U A 41 -56.862 26.046 -20.552 1.00 56.73 P
ATOM 26 OP1 U A 41 -57.478 25.050 -19.668 1.00 56.19 O
ATOM 27 OP2 U A 41 -57.368 27.444 -20.677 1.00 55.05 O
ATOM 28 O5' U A 41 -55.327 26.336 -20.212 1.00 59.79 O
TER
ATOM 1 O3' G B 43 -44.472 23.937 -30.222 1.00 49.50 O
ATOM 2 P G B 44 -45.350 24.780 -31.270 1.00 49.41 P
ATOM 3 OP1 G B 44 -44.510 25.302 -32.374 1.00 47.71 O
ATOM 4 OP2 G B 44 -46.078 25.880 -30.587 1.00 51.56 O
ATOM 5 O5' G B 44 -46.407 23.689 -31.837 1.00 48.22 O
ATOM 6 C5' G B 44 -47.743 24.128 -32.131 1.00 47.14 C
ATOM 7 C4' G B 44 -48.695 23.124 -31.558 1.00 47.00 C
ATOM 8 O4' G B 44 -48.823 23.326 -30.127 1.00 47.24 O
ATOM 9 C3' G B 44 -50.144 23.050 -32.042 1.00 46.10 C
ATOM 10 O3' G B 44 -50.223 22.246 -33.201 1.00 48.58 O
ATOM 11 C2' G B 44 -50.881 22.494 -30.846 1.00 45.07 C
ATOM 12 O2' G B 44 -50.686 21.087 -30.670 1.00 45.76 O
ATOM 13 C1' G B 44 -50.190 23.363 -29.816 1.00 46.15 C
ATOM 14 N9 G B 44 -50.559 24.774 -29.755 1.00 45.58 N
ATOM 15 C8 G B 44 -49.744 25.860 -29.835 1.00 45.35 C
ATOM 16 N7 G B 44 -50.361 26.996 -29.721 1.00 44.98 N
ATOM 17 C5 G B 44 -51.674 26.614 -29.556 1.00 44.32 C
ATOM 18 C6 G B 44 -52.787 27.441 -29.390 1.00 44.18 C
ATOM 19 O6 G B 44 -52.825 28.684 -29.376 1.00 47.10 O
ATOM 20 N1 G B 44 -53.957 26.690 -29.239 1.00 44.82 N
ATOM 21 C2 G B 44 -54.019 25.318 -29.248 1.00 47.19 C
ATOM 22 N2 G B 44 -55.224 24.802 -29.065 1.00 47.77 N
ATOM 23 N3 G B 44 -52.965 24.539 -29.414 1.00 47.45 N
ATOM 24 C4 G B 44 -51.836 25.260 -29.565 1.00 45.76 C
ATOM 25 P G B 45 -50.941 22.751 -34.497 1.00 49.66 P
ATOM 26 OP1 G B 45 -50.977 21.697 -35.537 1.00 49.67 O
ATOM 27 OP2 G B 45 -50.289 23.958 -35.038 1.00 47.70 O
ATOM 28 O5' G B 45 -52.423 23.086 -33.996 1.00 48.90 O
TER
ATOM 2 P G A 40 -59.212 29.509 -24.102 1.00 52.33 P
ATOM 3 OP1 G A 40 -60.313 29.539 -23.100 1.00 47.94 O
ATOM 4 OP2 G A 40 -57.853 30.093 -24.000 1.00 49.32 O
ATOM 5 O5' G A 40 -58.942 27.971 -24.509 1.00 52.63 O
ATOM 6 C5' G A 40 -58.737 27.001 -23.554 1.00 51.98 C
ATOM 7 C4' G A 40 -57.605 26.146 -24.046 1.00 53.00 C
ATOM 8 O4' G A 40 -56.932 26.813 -25.102 1.00 52.33 O
ATOM 9 C3' G A 40 -56.414 25.971 -23.130 1.00 55.47 C
ATOM 10 O3' G A 40 -56.728 25.227 -21.924 1.00 56.98 O
ATOM 11 C2' G A 40 -55.461 25.266 -24.086 1.00 55.22 C
ATOM 12 O2' G A 40 -55.763 23.888 -24.261 1.00 57.42 O
ATOM 13 C1' G A 40 -55.723 26.102 -25.335 1.00 56.14 C
ATOM 14 N9 G A 40 -54.711 27.120 -25.530 1.00 55.76 N
ATOM 15 C8 G A 40 -54.972 28.459 -25.531 1.00 57.43 C
ATOM 16 N7 G A 40 -53.936 29.213 -25.718 1.00 57.14 N
ATOM 17 C5 G A 40 -52.922 28.285 -25.818 1.00 56.40 C
ATOM 18 C6 G A 40 -51.561 28.538 -26.026 1.00 56.87 C
ATOM 19 O6 G A 40 -51.051 29.676 -26.139 1.00 57.46 O
ATOM 20 N1 G A 40 -50.829 27.361 -26.113 1.00 55.97 N
ATOM 21 C2 G A 40 -51.374 26.103 -26.007 1.00 56.73 C
ATOM 22 N2 G A 40 -50.548 25.047 -26.120 1.00 56.75 N
ATOM 23 N3 G A 40 -52.659 25.881 -25.808 1.00 58.09 N
ATOM 24 C4 G A 40 -53.373 27.009 -25.725 1.00 55.56 C
ATOM 25 P U A 41 -56.862 26.046 -20.552 1.00 56.73 P
ATOM 26 OP1 U A 41 -57.478 25.050 -19.668 1.00 56.19 O
ATOM 27 OP2 U A 41 -57.368 27.444 -20.677 1.00 55.05 O
ATOM 28 O5' U A 41 -55.327 26.336 -20.212 1.00 59.79 O
TER
ATOM 1 O3' G B 43 -44.472 23.937 -30.222 1.00 49.50 O
ATOM 2 P G B 44 -45.350 24.780 -31.270 1.00 49.41 P
ATOM 3 OP1 G B 44 -44.510 25.302 -32.374 1.00 47.71 O
ATOM 4 OP2 G B 44 -46.078 25.880 -30.587 1.00 51.56 O
ATOM 5 O5' G B 44 -46.407 23.689 -31.837 1.00 48.22 O
ATOM 6 C5' G B 44 -47.743 24.128 -32.131 1.00 47.14 C
ATOM 7 C4' G B 44 -48.695 23.124 -31.558 1.00 47.00 C
ATOM 8 O4' G B 44 -48.823 23.326 -30.127 1.00 47.24 O
ATOM 9 C3' G B 44 -50.144 23.050 -32.042 1.00 46.10 C
ATOM 10 O3' G B 44 -50.223 22.246 -33.201 1.00 48.58 O
ATOM 11 C2' G B 44 -50.881 22.494 -30.846 1.00 45.07 C
ATOM 12 O2' G B 44 -50.686 21.087 -30.670 1.00 45.76 O
ATOM 13 C1' G B 44 -50.190 23.363 -29.816 1.00 46.15 C
ATOM 14 N9 G B 44 -50.559 24.774 -29.755 1.00 45.58 N
ATOM 15 C8 G B 44 -49.744 25.860 -29.835 1.00 45.35 C
ATOM 16 N7 G B 44 -50.361 26.996 -29.721 1.00 44.98 N
ATOM 17 C5 G B 44 -51.674 26.614 -29.556 1.00 44.32 C
ATOM 18 C6 G B 44 -52.787 27.441 -29.390 1.00 44.18 C
ATOM 19 O6 G B 44 -52.825 28.684 -29.376 1.00 47.10 O
ATOM 20 N1 G B 44 -53.957 26.690 -29.239 1.00 44.82 N
ATOM 21 C2 G B 44 -54.019 25.318 -29.248 1.00 47.19 C
ATOM 22 N2 G B 44 -55.224 24.802 -29.065 1.00 47.77 N
ATOM 23 N3 G B 44 -52.965 24.539 -29.414 1.00 47.45 N
ATOM 24 C4 G B 44 -51.836 25.260 -29.565 1.00 45.76 C
ATOM 25 P G B 45 -50.941 22.751 -34.497 1.00 49.66 P
ATOM 26 OP1 G B 45 -50.977 21.697 -35.537 1.00 49.67 O
ATOM 27 OP2 G B 45 -50.289 23.958 -35.038 1.00 47.70 O
ATOM 28 O5' G B 45 -52.423 23.086 -33.996 1.00 48.90 O
TER
Atoms:
OP1: (-60.313,29.539,-23.100)
OP2: (-57.853,30.093,-24.000)
C3': (-56.414,25.971,-23.130)
C1': (-55.723,26.102,-25.335)
C5': (-58.737,27.001,-23.554)
O6: (-51.051,29.676,-26.139)
O4': (-56.932,26.813,-25.102)
C8: (-54.972,28.459,-25.531)
C2: (-51.374,26.103,-26.007)
C6: (-51.561,28.538,-26.026)
C5: (-52.922,28.285,-25.818)
C4: (-53.373,27.009,-25.725)
P: (-59.212,29.509,-24.102)
C4': (-57.605,26.146,-24.046)
C2': (-55.461,25.266,-24.086)
O2': (-55.763,23.888,-24.261)
N1: (-50.829,27.361,-26.113)
N2: (-50.548,25.047,-26.120)
N3: (-52.659,25.881,-25.808)
N7: (-53.936,29.213,-25.718)
N9: (-54.711,27.120,-25.530)
O5': (-58.942,27.971,-24.509)
O3': (-56.728,25.227,-21.924)
OP2: (-57.853,30.093,-24.000)
C3': (-56.414,25.971,-23.130)
C1': (-55.723,26.102,-25.335)
C5': (-58.737,27.001,-23.554)
O6: (-51.051,29.676,-26.139)
O4': (-56.932,26.813,-25.102)
C8: (-54.972,28.459,-25.531)
C2: (-51.374,26.103,-26.007)
C6: (-51.561,28.538,-26.026)
C5: (-52.922,28.285,-25.818)
C4: (-53.373,27.009,-25.725)
P: (-59.212,29.509,-24.102)
C4': (-57.605,26.146,-24.046)
C2': (-55.461,25.266,-24.086)
O2': (-55.763,23.888,-24.261)
N1: (-50.829,27.361,-26.113)
N2: (-50.548,25.047,-26.120)
N3: (-52.659,25.881,-25.808)
N7: (-53.936,29.213,-25.718)
N9: (-54.711,27.120,-25.530)
O5': (-58.942,27.971,-24.509)
O3': (-56.728,25.227,-21.924)
OP1: (-44.510,25.302,-32.374)
OP2: (-46.078,25.880,-30.587)
C3': (-50.144,23.050,-32.042)
C1': (-50.190,23.363,-29.816)
C5': (-47.743,24.128,-32.131)
O6: (-52.825,28.684,-29.376)
O4': (-48.823,23.326,-30.127)
C8: (-49.744,25.860,-29.835)
C2: (-54.019,25.318,-29.248)
C6: (-52.787,27.441,-29.390)
C5: (-51.674,26.614,-29.556)
C4: (-51.836,25.260,-29.565)
P: (-45.350,24.780,-31.270)
C4': (-48.695,23.124,-31.558)
C2': (-50.881,22.494,-30.846)
O2': (-50.686,21.087,-30.670)
N1: (-53.957,26.690,-29.239)
N2: (-55.224,24.802,-29.065)
N3: (-52.965,24.539,-29.414)
N7: (-50.361,26.996,-29.721)
N9: (-50.559,24.774,-29.755)
O5': (-46.407,23.689,-31.837)
O3': (-50.223,22.246,-33.201)
OP2: (-46.078,25.880,-30.587)
C3': (-50.144,23.050,-32.042)
C1': (-50.190,23.363,-29.816)
C5': (-47.743,24.128,-32.131)
O6: (-52.825,28.684,-29.376)
O4': (-48.823,23.326,-30.127)
C8: (-49.744,25.860,-29.835)
C2: (-54.019,25.318,-29.248)
C6: (-52.787,27.441,-29.390)
C5: (-51.674,26.614,-29.556)
C4: (-51.836,25.260,-29.565)
P: (-45.350,24.780,-31.270)
C4': (-48.695,23.124,-31.558)
C2': (-50.881,22.494,-30.846)
O2': (-50.686,21.087,-30.670)
N1: (-53.957,26.690,-29.239)
N2: (-55.224,24.802,-29.065)
N3: (-52.965,24.539,-29.414)
N7: (-50.361,26.996,-29.721)
N9: (-50.559,24.774,-29.755)
O5': (-46.407,23.689,-31.837)
O3': (-50.223,22.246,-33.201)
Image (generated by PyMOL):