Doublet info:
Details
Nucleotide types:
GG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YZ9:E8:F1
Extra
PDB:
ATOM 1 O3' C A 7 -10.141 23.320 42.358 1.00 70.97 O
ATOM 2 P G A 8 -11.607 22.702 42.590 1.00 71.59 P
ATOM 3 OP1 G A 8 -12.546 23.386 41.663 1.00 75.60 O
ATOM 4 OP2 G A 8 -11.866 22.729 44.053 1.00 71.10 O
ATOM 5 O5' G A 8 -11.461 21.182 42.135 1.00 62.33 O
ATOM 6 C5' G A 8 -11.051 20.860 40.814 1.00 57.40 C
ATOM 7 C4' G A 8 -10.659 19.406 40.725 1.00 63.31 C
ATOM 8 O4' G A 8 -9.533 19.149 41.606 1.00 64.97 O
ATOM 9 C3' G A 8 -11.698 18.406 41.200 1.00 65.71 C
ATOM 10 O3' G A 8 -12.688 18.165 40.211 1.00 74.02 O
ATOM 11 C2' G A 8 -10.841 17.173 41.456 1.00 66.57 C
ATOM 12 O2' G A 8 -10.498 16.492 40.265 1.00 65.09 O
ATOM 13 C1' G A 8 -9.587 17.805 42.064 1.00 60.79 C
ATOM 14 N9 G A 8 -9.602 17.801 43.525 1.00 55.83 N
ATOM 15 C8 G A 8 -9.784 18.871 44.368 1.00 53.34 C
ATOM 16 N7 G A 8 -9.733 18.542 45.633 1.00 53.99 N
ATOM 17 C5 G A 8 -9.503 17.173 45.621 1.00 54.74 C
ATOM 18 C6 G A 8 -9.346 16.250 46.696 1.00 53.60 C
ATOM 19 O6 G A 8 -9.367 16.470 47.917 1.00 52.12 O
ATOM 20 N1 G A 8 -9.144 14.955 46.230 1.00 53.69 N
ATOM 21 C2 G A 8 -9.094 14.590 44.907 1.00 52.40 C
ATOM 22 N2 G A 8 -8.905 13.288 44.659 1.00 52.05 N
ATOM 23 N3 G A 8 -9.224 15.438 43.901 1.00 53.69 N
ATOM 24 C4 G A 8 -9.427 16.701 44.328 1.00 54.07 C
ATOM 25 P C A 9 -14.155 17.684 40.660 1.00 77.06 P
ATOM 26 OP1 C A 9 -15.050 17.788 39.479 1.00 76.40 O
ATOM 27 OP2 C A 9 -14.499 18.412 41.911 1.00 68.60 O
ATOM 28 O5' C A 9 -13.959 16.139 40.998 1.00 70.21 O
TER
ATOM 1 P G B 1 -3.558 8.313 47.351 1.00 80.52 P
ATOM 2 OP1 G B 1 -2.717 7.165 46.921 1.00 79.94 O
ATOM 3 OP2 G B 1 -3.096 9.189 48.459 1.00 75.08 O
ATOM 4 O5' G B 1 -3.838 9.217 46.071 1.00 74.92 O
ATOM 5 C5' G B 1 -4.142 8.618 44.817 1.00 73.48 C
ATOM 6 C4' G B 1 -4.401 9.679 43.774 1.00 72.56 C
ATOM 7 O4' G B 1 -5.607 10.416 44.110 1.00 70.17 O
ATOM 8 C3' G B 1 -3.346 10.765 43.650 1.00 68.49 C
ATOM 9 O3' G B 1 -2.238 10.333 42.873 1.00 71.79 O
ATOM 10 C2' G B 1 -4.129 11.872 42.957 1.00 67.86 C
ATOM 11 O2' G B 1 -4.288 11.650 41.571 1.00 68.29 O
ATOM 12 C1' G B 1 -5.484 11.757 43.654 1.00 67.81 C
ATOM 13 N9 G B 1 -5.576 12.645 44.806 1.00 62.69 N
ATOM 14 C8 G B 1 -5.505 12.296 46.132 1.00 59.11 C
ATOM 15 N7 G B 1 -5.612 13.318 46.937 1.00 62.98 N
ATOM 16 C5 G B 1 -5.764 14.408 46.090 1.00 59.12 C
ATOM 17 C6 G B 1 -5.919 15.787 46.385 1.00 60.38 C
ATOM 18 O6 G B 1 -5.949 16.340 47.492 1.00 61.77 O
ATOM 19 N1 G B 1 -6.041 16.547 45.225 1.00 58.86 N
ATOM 20 C2 G B 1 -6.010 16.047 43.946 1.00 58.25 C
ATOM 21 N2 G B 1 -6.142 16.942 42.957 1.00 60.08 N
ATOM 22 N3 G B 1 -5.860 14.765 43.657 1.00 60.39 N
ATOM 23 C4 G B 1 -5.746 14.008 44.771 1.00 61.51 C
ATOM 24 P A B 2 -0.816 11.071 43.033 1.00 72.82 P
ATOM 25 OP1 A B 2 0.126 10.433 42.079 1.00 70.84 O
ATOM 26 OP2 A B 2 -0.472 11.133 44.476 1.00 59.33 O
ATOM 27 O5' A B 2 -1.101 12.557 42.538 1.00 65.68 O
TER
ATOM 2 P G A 8 -11.607 22.702 42.590 1.00 71.59 P
ATOM 3 OP1 G A 8 -12.546 23.386 41.663 1.00 75.60 O
ATOM 4 OP2 G A 8 -11.866 22.729 44.053 1.00 71.10 O
ATOM 5 O5' G A 8 -11.461 21.182 42.135 1.00 62.33 O
ATOM 6 C5' G A 8 -11.051 20.860 40.814 1.00 57.40 C
ATOM 7 C4' G A 8 -10.659 19.406 40.725 1.00 63.31 C
ATOM 8 O4' G A 8 -9.533 19.149 41.606 1.00 64.97 O
ATOM 9 C3' G A 8 -11.698 18.406 41.200 1.00 65.71 C
ATOM 10 O3' G A 8 -12.688 18.165 40.211 1.00 74.02 O
ATOM 11 C2' G A 8 -10.841 17.173 41.456 1.00 66.57 C
ATOM 12 O2' G A 8 -10.498 16.492 40.265 1.00 65.09 O
ATOM 13 C1' G A 8 -9.587 17.805 42.064 1.00 60.79 C
ATOM 14 N9 G A 8 -9.602 17.801 43.525 1.00 55.83 N
ATOM 15 C8 G A 8 -9.784 18.871 44.368 1.00 53.34 C
ATOM 16 N7 G A 8 -9.733 18.542 45.633 1.00 53.99 N
ATOM 17 C5 G A 8 -9.503 17.173 45.621 1.00 54.74 C
ATOM 18 C6 G A 8 -9.346 16.250 46.696 1.00 53.60 C
ATOM 19 O6 G A 8 -9.367 16.470 47.917 1.00 52.12 O
ATOM 20 N1 G A 8 -9.144 14.955 46.230 1.00 53.69 N
ATOM 21 C2 G A 8 -9.094 14.590 44.907 1.00 52.40 C
ATOM 22 N2 G A 8 -8.905 13.288 44.659 1.00 52.05 N
ATOM 23 N3 G A 8 -9.224 15.438 43.901 1.00 53.69 N
ATOM 24 C4 G A 8 -9.427 16.701 44.328 1.00 54.07 C
ATOM 25 P C A 9 -14.155 17.684 40.660 1.00 77.06 P
ATOM 26 OP1 C A 9 -15.050 17.788 39.479 1.00 76.40 O
ATOM 27 OP2 C A 9 -14.499 18.412 41.911 1.00 68.60 O
ATOM 28 O5' C A 9 -13.959 16.139 40.998 1.00 70.21 O
TER
ATOM 1 P G B 1 -3.558 8.313 47.351 1.00 80.52 P
ATOM 2 OP1 G B 1 -2.717 7.165 46.921 1.00 79.94 O
ATOM 3 OP2 G B 1 -3.096 9.189 48.459 1.00 75.08 O
ATOM 4 O5' G B 1 -3.838 9.217 46.071 1.00 74.92 O
ATOM 5 C5' G B 1 -4.142 8.618 44.817 1.00 73.48 C
ATOM 6 C4' G B 1 -4.401 9.679 43.774 1.00 72.56 C
ATOM 7 O4' G B 1 -5.607 10.416 44.110 1.00 70.17 O
ATOM 8 C3' G B 1 -3.346 10.765 43.650 1.00 68.49 C
ATOM 9 O3' G B 1 -2.238 10.333 42.873 1.00 71.79 O
ATOM 10 C2' G B 1 -4.129 11.872 42.957 1.00 67.86 C
ATOM 11 O2' G B 1 -4.288 11.650 41.571 1.00 68.29 O
ATOM 12 C1' G B 1 -5.484 11.757 43.654 1.00 67.81 C
ATOM 13 N9 G B 1 -5.576 12.645 44.806 1.00 62.69 N
ATOM 14 C8 G B 1 -5.505 12.296 46.132 1.00 59.11 C
ATOM 15 N7 G B 1 -5.612 13.318 46.937 1.00 62.98 N
ATOM 16 C5 G B 1 -5.764 14.408 46.090 1.00 59.12 C
ATOM 17 C6 G B 1 -5.919 15.787 46.385 1.00 60.38 C
ATOM 18 O6 G B 1 -5.949 16.340 47.492 1.00 61.77 O
ATOM 19 N1 G B 1 -6.041 16.547 45.225 1.00 58.86 N
ATOM 20 C2 G B 1 -6.010 16.047 43.946 1.00 58.25 C
ATOM 21 N2 G B 1 -6.142 16.942 42.957 1.00 60.08 N
ATOM 22 N3 G B 1 -5.860 14.765 43.657 1.00 60.39 N
ATOM 23 C4 G B 1 -5.746 14.008 44.771 1.00 61.51 C
ATOM 24 P A B 2 -0.816 11.071 43.033 1.00 72.82 P
ATOM 25 OP1 A B 2 0.126 10.433 42.079 1.00 70.84 O
ATOM 26 OP2 A B 2 -0.472 11.133 44.476 1.00 59.33 O
ATOM 27 O5' A B 2 -1.101 12.557 42.538 1.00 65.68 O
TER
Atoms:
OP1: (-12.546,23.386,41.663)
OP2: (-11.866,22.729,44.053)
C3': (-11.698,18.406,41.200)
C1': (-9.587,17.805,42.064)
C5': (-11.051,20.860,40.814)
O6: (-9.367,16.470,47.917)
O4': (-9.533,19.149,41.606)
C8: (-9.784,18.871,44.368)
C2: (-9.094,14.590,44.907)
C6: (-9.346,16.250,46.696)
C5: (-9.503,17.173,45.621)
C4: (-9.427,16.701,44.328)
P: (-11.607,22.702,42.590)
C4': (-10.659,19.406,40.725)
C2': (-10.841,17.173,41.456)
O2': (-10.498,16.492,40.265)
N1: (-9.144,14.955,46.230)
N2: (-8.905,13.288,44.659)
N3: (-9.224,15.438,43.901)
N7: (-9.733,18.542,45.633)
N9: (-9.602,17.801,43.525)
O5': (-11.461,21.182,42.135)
O3': (-12.688,18.165,40.211)
OP2: (-11.866,22.729,44.053)
C3': (-11.698,18.406,41.200)
C1': (-9.587,17.805,42.064)
C5': (-11.051,20.860,40.814)
O6: (-9.367,16.470,47.917)
O4': (-9.533,19.149,41.606)
C8: (-9.784,18.871,44.368)
C2: (-9.094,14.590,44.907)
C6: (-9.346,16.250,46.696)
C5: (-9.503,17.173,45.621)
C4: (-9.427,16.701,44.328)
P: (-11.607,22.702,42.590)
C4': (-10.659,19.406,40.725)
C2': (-10.841,17.173,41.456)
O2': (-10.498,16.492,40.265)
N1: (-9.144,14.955,46.230)
N2: (-8.905,13.288,44.659)
N3: (-9.224,15.438,43.901)
N7: (-9.733,18.542,45.633)
N9: (-9.602,17.801,43.525)
O5': (-11.461,21.182,42.135)
O3': (-12.688,18.165,40.211)
OP1: (-2.717,7.165,46.921)
OP2: (-3.096,9.189,48.459)
C3': (-3.346,10.765,43.650)
C1': (-5.484,11.757,43.654)
C5': (-4.142,8.618,44.817)
O6: (-5.949,16.340,47.492)
O4': (-5.607,10.416,44.110)
C8: (-5.505,12.296,46.132)
C2: (-6.010,16.047,43.946)
C6: (-5.919,15.787,46.385)
C5: (-5.764,14.408,46.090)
C4: (-5.746,14.008,44.771)
P: (-3.558,8.313,47.351)
C4': (-4.401,9.679,43.774)
C2': (-4.129,11.872,42.957)
O2': (-4.288,11.650,41.571)
N1: (-6.041,16.547,45.225)
N2: (-6.142,16.942,42.957)
N3: (-5.860,14.765,43.657)
N7: (-5.612,13.318,46.937)
N9: (-5.576,12.645,44.806)
O5': (-3.838,9.217,46.071)
O3': (-2.238,10.333,42.873)
OP2: (-3.096,9.189,48.459)
C3': (-3.346,10.765,43.650)
C1': (-5.484,11.757,43.654)
C5': (-4.142,8.618,44.817)
O6: (-5.949,16.340,47.492)
O4': (-5.607,10.416,44.110)
C8: (-5.505,12.296,46.132)
C2: (-6.010,16.047,43.946)
C6: (-5.919,15.787,46.385)
C5: (-5.764,14.408,46.090)
C4: (-5.746,14.008,44.771)
P: (-3.558,8.313,47.351)
C4': (-4.401,9.679,43.774)
C2': (-4.129,11.872,42.957)
O2': (-4.288,11.650,41.571)
N1: (-6.041,16.547,45.225)
N2: (-6.142,16.942,42.957)
N3: (-5.860,14.765,43.657)
N7: (-5.612,13.318,46.937)
N9: (-5.576,12.645,44.806)
O5': (-3.838,9.217,46.071)
O3': (-2.238,10.333,42.873)
Image (generated by PyMOL):