ClaRNA

Doublet info:

Details

Nucleotide types: GG
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 3I2R:B28:C2

Extra

PDB:
ATOM 1 O3' C A 27 39.015 -4.360 43.559 1.00 54.49 O
ATOM 2 P G A 28 40.305 -5.004 42.846 1.00 58.88 P
ATOM 3 OP1 G A 28 39.997 -6.453 42.802 1.00 58.05 O
ATOM 4 OP2 G A 28 41.589 -4.544 43.447 1.00 47.42 O
ATOM 5 O5' G A 28 40.236 -4.441 41.359 1.00 57.30 O
ATOM 6 C5' G A 28 39.100 -4.695 40.547 1.00 53.41 C
ATOM 7 C4' G A 28 39.264 -4.060 39.188 1.00 55.99 C
ATOM 8 O4' G A 28 39.037 -2.624 39.262 1.00 58.08 O
ATOM 9 C3' G A 28 40.648 -4.175 38.588 1.00 56.07 C
ATOM 10 O3' G A 28 40.830 -5.440 37.991 1.00 54.52 O
ATOM 11 C2' G A 28 40.650 -3.035 37.581 1.00 54.89 C
ATOM 12 O2' G A 28 39.896 -3.386 36.447 1.00 52.83 O
ATOM 13 C1' G A 28 39.893 -1.955 38.348 1.00 54.80 C
ATOM 14 N9 G A 28 40.804 -1.105 39.106 1.00 59.14 N
ATOM 15 C8 G A 28 41.119 -1.205 40.441 1.00 60.30 C
ATOM 16 N7 G A 28 42.008 -0.327 40.825 1.00 60.24 N
ATOM 17 C5 G A 28 42.286 0.401 39.677 1.00 59.45 C
ATOM 18 C6 G A 28 43.188 1.464 39.468 1.00 59.50 C
ATOM 19 O6 G A 28 43.940 2.002 40.281 1.00 59.89 O
ATOM 20 N1 G A 28 43.173 1.894 38.147 1.00 59.90 N
ATOM 21 C2 G A 28 42.384 1.367 37.157 1.00 59.52 C
ATOM 22 N2 G A 28 42.514 1.906 35.939 1.00 62.24 N
ATOM 23 N3 G A 28 41.533 0.380 37.343 1.00 58.91 N
ATOM 24 C4 G A 28 41.541 -0.058 38.613 1.00 59.02 C
ATOM 25 P A A 29 42.305 -5.915 37.571 1.00 54.18 P
ATOM 26 OP1 A A 29 42.136 -7.310 37.084 1.00 55.69 O
ATOM 27 OP2 A A 29 43.266 -5.638 38.665 1.00 42.44 O
ATOM 28 O5' A A 29 42.641 -4.957 36.340 1.00 52.91 O
TER

ATOM 1 O3' C B 1 43.246 9.063 33.552 1.00 49.28 O
ATOM 2 P G B 2 41.732 9.369 33.973 1.00 55.39 P
ATOM 3 OP1 G B 2 41.157 10.292 32.966 1.00 52.74 O
ATOM 4 OP2 G B 2 41.744 9.737 35.406 1.00 50.64 O
ATOM 5 O5' G B 2 40.966 7.975 33.883 1.00 56.42 O
ATOM 6 C5' G B 2 40.639 7.386 32.630 1.00 57.11 C
ATOM 7 C4' G B 2 39.844 6.128 32.855 1.00 57.95 C
ATOM 8 O4' G B 2 40.647 5.193 33.620 1.00 59.02 O
ATOM 9 C3' G B 2 38.589 6.331 33.679 1.00 56.85 C
ATOM 10 O3' G B 2 37.512 6.634 32.809 1.00 57.28 O
ATOM 11 C2' G B 2 38.400 4.974 34.341 1.00 56.62 C
ATOM 12 O2' G B 2 37.806 4.046 33.467 1.00 56.12 O
ATOM 13 C1' G B 2 39.846 4.549 34.587 1.00 56.31 C
ATOM 14 N9 G B 2 40.385 4.883 35.901 1.00 56.96 N
ATOM 15 C8 G B 2 41.289 5.875 36.187 1.00 55.46 C
ATOM 16 N7 G B 2 41.655 5.889 37.441 1.00 57.18 N
ATOM 17 C5 G B 2 40.934 4.857 38.023 1.00 55.20 C
ATOM 18 C6 G B 2 40.926 4.386 39.356 1.00 54.81 C
ATOM 19 O6 G B 2 41.577 4.799 40.322 1.00 55.71 O
ATOM 20 N1 G B 2 40.053 3.317 39.513 1.00 54.33 N
ATOM 21 C2 G B 2 39.290 2.770 38.516 1.00 54.28 C
ATOM 22 N2 G B 2 38.520 1.741 38.867 1.00 54.95 N
ATOM 23 N3 G B 2 39.285 3.199 37.267 1.00 53.85 N
ATOM 24 C4 G B 2 40.129 4.236 37.091 1.00 56.40 C
ATOM 25 P U B 3 36.165 7.266 33.401 1.00 59.83 P
ATOM 26 OP1 U B 3 35.189 7.387 32.287 1.00 61.43 O
ATOM 27 OP2 U B 3 36.539 8.461 34.197 1.00 61.79 O
ATOM 28 O5' U B 3 35.610 6.174 34.415 1.00 62.22 O
TER

Atoms:
OP1: (39.997,-6.453,42.802)
OP2: (41.589,-4.544,43.447)
C3': (40.648,-4.175,38.588)
C1': (39.893,-1.955,38.348)
C5': (39.100,-4.695,40.547)
O6: (43.940,2.002,40.281)
O4': (39.037,-2.624,39.262)
C8: (41.119,-1.205,40.441)
C2: (42.384,1.367,37.157)
C6: (43.188,1.464,39.468)
C5: (42.286,0.401,39.677)
C4: (41.541,-0.058,38.613)
P: (40.305,-5.004,42.846)
C4': (39.264,-4.060,39.188)
C2': (40.650,-3.035,37.581)
O2': (39.896,-3.386,36.447)
N1: (43.173,1.894,38.147)
N2: (42.514,1.906,35.939)
N3: (41.533,0.380,37.343)
N7: (42.008,-0.327,40.825)
N9: (40.804,-1.105,39.106)
O5': (40.236,-4.441,41.359)
O3': (40.830,-5.440,37.991)
OP1: (41.157,10.292,32.966)
OP2: (41.744,9.737,35.406)
C3': (38.589,6.331,33.679)
C1': (39.846,4.549,34.587)
C5': (40.639,7.386,32.630)
O6: (41.577,4.799,40.322)
O4': (40.647,5.193,33.620)
C8: (41.289,5.875,36.187)
C2: (39.290,2.770,38.516)
C6: (40.926,4.386,39.356)
C5: (40.934,4.857,38.023)
C4: (40.129,4.236,37.091)
P: (41.732,9.369,33.973)
C4': (39.844,6.128,32.855)
C2': (38.400,4.974,34.341)
O2': (37.806,4.046,33.467)
N1: (40.053,3.317,39.513)
N2: (38.520,1.741,38.867)
N3: (39.285,3.199,37.267)
N7: (41.655,5.889,37.441)
N9: (40.385,4.883,35.901)
O5': (40.966,7.975,33.883)
O3': (37.512,6.634,32.809)
Image (generated by PyMOL):
PyMOL image
show in jmol