Doublet info:
Details
Nucleotide types:
AC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:131:1875
Extra
PDB:
ATOM 1 O3' G A 30 37.012 -22.734 105.026 1.00 35.00 O
ATOM 2 P A A 31 36.838 -23.718 103.781 1.00 36.37 P
ATOM 3 OP1 A A 31 35.743 -23.169 102.976 1.00 36.14 O
ATOM 4 OP2 A A 31 36.731 -25.088 104.321 1.00 36.61 O
ATOM 5 O5' A A 31 38.214 -23.554 103.004 1.00 36.19 O
ATOM 6 C5' A A 31 38.251 -23.288 101.628 1.00 35.86 C
ATOM 7 C4' A A 31 38.014 -21.834 101.368 1.00 35.70 C
ATOM 8 O4' A A 31 38.982 -21.039 102.080 1.00 35.82 O
ATOM 9 C3' A A 31 38.134 -21.420 99.925 1.00 35.36 C
ATOM 10 O3' A A 31 36.919 -21.589 99.276 1.00 35.23 O
ATOM 11 C2' A A 31 38.541 -19.963 100.023 1.00 35.30 C
ATOM 12 O2' A A 31 37.416 -19.134 100.279 1.00 35.30 O
ATOM 13 C1' A A 31 39.410 -19.972 101.271 1.00 35.58 C
ATOM 14 N9 A A 31 40.824 -20.172 100.948 1.00 35.55 N
ATOM 15 C8 A A 31 41.604 -21.263 101.198 1.00 35.69 C
ATOM 16 N7 A A 31 42.835 -21.161 100.773 1.00 35.62 N
ATOM 17 C5 A A 31 42.816 -19.914 100.203 1.00 35.42 C
ATOM 18 C6 A A 31 43.821 -19.209 99.607 1.00 35.28 C
ATOM 19 N6 A A 31 45.011 -19.742 99.524 1.00 35.34 N
ATOM 20 N1 A A 31 43.558 -17.988 99.131 1.00 35.11 N
ATOM 21 C2 A A 31 42.317 -17.519 99.284 1.00 35.09 C
ATOM 22 N3 A A 31 41.260 -18.090 99.865 1.00 35.21 N
ATOM 23 C4 A A 31 41.595 -19.300 100.289 1.00 35.37 C
ATOM 24 P A A 32 36.686 -22.671 98.137 1.00 34.61 P
ATOM 25 OP1 A A 32 35.257 -23.055 98.210 1.00 34.65 O
ATOM 26 OP2 A A 32 37.684 -23.715 98.285 1.00 34.72 O
ATOM 27 O5' A A 32 36.981 -21.806 96.850 1.00 34.30 O
TER
ATOM 1 O3' U B 874 49.766 -10.835 99.686 1.00 33.88 O
ATOM 2 P C B 875 50.111 -11.487 98.306 1.00 32.66 P
ATOM 3 OP1 C B 875 51.407 -12.119 98.436 1.00 32.78 O
ATOM 4 OP2 C B 875 49.915 -10.431 97.289 1.00 32.43 O
ATOM 5 O5' C B 875 49.008 -12.613 98.168 1.00 32.59 O
ATOM 6 C5' C B 875 49.081 -13.763 98.980 1.00 32.78 C
ATOM 7 C4' C B 875 47.956 -14.722 98.707 1.00 32.69 C
ATOM 8 O4' C B 875 46.686 -14.117 99.049 1.00 32.69 O
ATOM 9 C3' C B 875 47.783 -15.159 97.267 1.00 32.40 C
ATOM 10 O3' C B 875 48.689 -16.172 96.921 1.00 32.41 O
ATOM 11 C2' C B 875 46.329 -15.609 97.257 1.00 32.34 C
ATOM 12 O2' C B 875 46.195 -16.844 97.917 1.00 32.52 O
ATOM 13 C1' C B 875 45.695 -14.564 98.148 1.00 32.47 C
ATOM 14 N1 C B 875 45.190 -13.418 97.387 1.00 32.26 N
ATOM 15 C2 C B 875 43.985 -13.634 96.748 1.00 32.10 C
ATOM 16 O2 C B 875 43.456 -14.724 96.842 1.00 32.13 O
ATOM 17 N3 C B 875 43.389 -12.717 96.019 1.00 31.92 N
ATOM 18 C4 C B 875 43.996 -11.582 95.944 1.00 31.91 C
ATOM 19 N4 C B 875 43.309 -10.711 95.230 1.00 31.75 N
ATOM 20 C5 C B 875 45.243 -11.290 96.604 1.00 32.08 C
ATOM 21 C6 C B 875 45.832 -12.230 97.330 1.00 32.26 C
ATOM 22 P U B 876 49.066 -16.453 95.403 1.00 36.31 P
ATOM 23 OP1 U B 876 47.859 -17.037 94.768 1.00 36.15 O
ATOM 24 OP2 U B 876 50.320 -17.244 95.395 1.00 36.42 O
ATOM 25 O5' U B 876 49.348 -15.020 94.818 1.00 36.16 O
TER
ATOM 2 P A A 31 36.838 -23.718 103.781 1.00 36.37 P
ATOM 3 OP1 A A 31 35.743 -23.169 102.976 1.00 36.14 O
ATOM 4 OP2 A A 31 36.731 -25.088 104.321 1.00 36.61 O
ATOM 5 O5' A A 31 38.214 -23.554 103.004 1.00 36.19 O
ATOM 6 C5' A A 31 38.251 -23.288 101.628 1.00 35.86 C
ATOM 7 C4' A A 31 38.014 -21.834 101.368 1.00 35.70 C
ATOM 8 O4' A A 31 38.982 -21.039 102.080 1.00 35.82 O
ATOM 9 C3' A A 31 38.134 -21.420 99.925 1.00 35.36 C
ATOM 10 O3' A A 31 36.919 -21.589 99.276 1.00 35.23 O
ATOM 11 C2' A A 31 38.541 -19.963 100.023 1.00 35.30 C
ATOM 12 O2' A A 31 37.416 -19.134 100.279 1.00 35.30 O
ATOM 13 C1' A A 31 39.410 -19.972 101.271 1.00 35.58 C
ATOM 14 N9 A A 31 40.824 -20.172 100.948 1.00 35.55 N
ATOM 15 C8 A A 31 41.604 -21.263 101.198 1.00 35.69 C
ATOM 16 N7 A A 31 42.835 -21.161 100.773 1.00 35.62 N
ATOM 17 C5 A A 31 42.816 -19.914 100.203 1.00 35.42 C
ATOM 18 C6 A A 31 43.821 -19.209 99.607 1.00 35.28 C
ATOM 19 N6 A A 31 45.011 -19.742 99.524 1.00 35.34 N
ATOM 20 N1 A A 31 43.558 -17.988 99.131 1.00 35.11 N
ATOM 21 C2 A A 31 42.317 -17.519 99.284 1.00 35.09 C
ATOM 22 N3 A A 31 41.260 -18.090 99.865 1.00 35.21 N
ATOM 23 C4 A A 31 41.595 -19.300 100.289 1.00 35.37 C
ATOM 24 P A A 32 36.686 -22.671 98.137 1.00 34.61 P
ATOM 25 OP1 A A 32 35.257 -23.055 98.210 1.00 34.65 O
ATOM 26 OP2 A A 32 37.684 -23.715 98.285 1.00 34.72 O
ATOM 27 O5' A A 32 36.981 -21.806 96.850 1.00 34.30 O
TER
ATOM 1 O3' U B 874 49.766 -10.835 99.686 1.00 33.88 O
ATOM 2 P C B 875 50.111 -11.487 98.306 1.00 32.66 P
ATOM 3 OP1 C B 875 51.407 -12.119 98.436 1.00 32.78 O
ATOM 4 OP2 C B 875 49.915 -10.431 97.289 1.00 32.43 O
ATOM 5 O5' C B 875 49.008 -12.613 98.168 1.00 32.59 O
ATOM 6 C5' C B 875 49.081 -13.763 98.980 1.00 32.78 C
ATOM 7 C4' C B 875 47.956 -14.722 98.707 1.00 32.69 C
ATOM 8 O4' C B 875 46.686 -14.117 99.049 1.00 32.69 O
ATOM 9 C3' C B 875 47.783 -15.159 97.267 1.00 32.40 C
ATOM 10 O3' C B 875 48.689 -16.172 96.921 1.00 32.41 O
ATOM 11 C2' C B 875 46.329 -15.609 97.257 1.00 32.34 C
ATOM 12 O2' C B 875 46.195 -16.844 97.917 1.00 32.52 O
ATOM 13 C1' C B 875 45.695 -14.564 98.148 1.00 32.47 C
ATOM 14 N1 C B 875 45.190 -13.418 97.387 1.00 32.26 N
ATOM 15 C2 C B 875 43.985 -13.634 96.748 1.00 32.10 C
ATOM 16 O2 C B 875 43.456 -14.724 96.842 1.00 32.13 O
ATOM 17 N3 C B 875 43.389 -12.717 96.019 1.00 31.92 N
ATOM 18 C4 C B 875 43.996 -11.582 95.944 1.00 31.91 C
ATOM 19 N4 C B 875 43.309 -10.711 95.230 1.00 31.75 N
ATOM 20 C5 C B 875 45.243 -11.290 96.604 1.00 32.08 C
ATOM 21 C6 C B 875 45.832 -12.230 97.330 1.00 32.26 C
ATOM 22 P U B 876 49.066 -16.453 95.403 1.00 36.31 P
ATOM 23 OP1 U B 876 47.859 -17.037 94.768 1.00 36.15 O
ATOM 24 OP2 U B 876 50.320 -17.244 95.395 1.00 36.42 O
ATOM 25 O5' U B 876 49.348 -15.020 94.818 1.00 36.16 O
TER
Atoms:
OP1: (35.743,-23.169,102.976)
OP2: (36.731,-25.088,104.321)
C3': (38.134,-21.420,99.925)
C1': (39.410,-19.972,101.271)
C5': (38.251,-23.288,101.628)
O4': (38.982,-21.039,102.080)
C8: (41.604,-21.263,101.198)
O2': (37.416,-19.134,100.279)
C6: (43.821,-19.209,99.607)
C5: (42.816,-19.914,100.203)
C4: (41.595,-19.300,100.289)
P: (36.838,-23.718,103.781)
C4': (38.014,-21.834,101.368)
C2': (38.541,-19.963,100.023)
C2: (42.317,-17.519,99.284)
N1: (43.558,-17.988,99.131)
N3: (41.260,-18.090,99.865)
N6: (45.011,-19.742,99.524)
N7: (42.835,-21.161,100.773)
N9: (40.824,-20.172,100.948)
O5': (38.214,-23.554,103.004)
O3': (36.919,-21.589,99.276)
OP2: (36.731,-25.088,104.321)
C3': (38.134,-21.420,99.925)
C1': (39.410,-19.972,101.271)
C5': (38.251,-23.288,101.628)
O4': (38.982,-21.039,102.080)
C8: (41.604,-21.263,101.198)
O2': (37.416,-19.134,100.279)
C6: (43.821,-19.209,99.607)
C5: (42.816,-19.914,100.203)
C4: (41.595,-19.300,100.289)
P: (36.838,-23.718,103.781)
C4': (38.014,-21.834,101.368)
C2': (38.541,-19.963,100.023)
C2: (42.317,-17.519,99.284)
N1: (43.558,-17.988,99.131)
N3: (41.260,-18.090,99.865)
N6: (45.011,-19.742,99.524)
N7: (42.835,-21.161,100.773)
N9: (40.824,-20.172,100.948)
O5': (38.214,-23.554,103.004)
O3': (36.919,-21.589,99.276)
C2: (43.985,-13.634,96.748)
OP1: (51.407,-12.119,98.436)
OP2: (49.915,-10.431,97.289)
C4: (43.996,-11.582,95.944)
O5': (49.008,-12.613,98.168)
C3': (47.783,-15.159,97.267)
C1': (45.695,-14.564,98.148)
O4': (46.686,-14.117,99.049)
C5': (49.081,-13.763,98.980)
P: (50.111,-11.487,98.306)
O2: (43.456,-14.724,96.842)
C4': (47.956,-14.722,98.707)
C2': (46.329,-15.609,97.257)
O2': (46.195,-16.844,97.917)
N1: (45.190,-13.418,97.387)
N3: (43.389,-12.717,96.019)
N4: (43.309,-10.711,95.230)
C6: (45.832,-12.230,97.330)
C5: (45.243,-11.290,96.604)
O3': (48.689,-16.172,96.921)
OP1: (51.407,-12.119,98.436)
OP2: (49.915,-10.431,97.289)
C4: (43.996,-11.582,95.944)
O5': (49.008,-12.613,98.168)
C3': (47.783,-15.159,97.267)
C1': (45.695,-14.564,98.148)
O4': (46.686,-14.117,99.049)
C5': (49.081,-13.763,98.980)
P: (50.111,-11.487,98.306)
O2: (43.456,-14.724,96.842)
C4': (47.956,-14.722,98.707)
C2': (46.329,-15.609,97.257)
O2': (46.195,-16.844,97.917)
N1: (45.190,-13.418,97.387)
N3: (43.389,-12.717,96.019)
N4: (43.309,-10.711,95.230)
C6: (45.832,-12.230,97.330)
C5: (45.243,-11.290,96.604)
O3': (48.689,-16.172,96.921)
Image (generated by PyMOL):