Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12023:12036
Extra
PDB:
ATOM 1 O3' A A2022 18.129 -48.829 116.181 1.00 52.29 O
ATOM 2 P G A2023 18.149 -50.429 116.279 1.00 55.83 P
ATOM 3 OP1 G A2023 19.087 -50.775 117.391 1.00 56.18 O
ATOM 4 OP2 G A2023 18.433 -50.958 114.919 1.00 55.55 O
ATOM 5 O5' G A2023 16.641 -50.753 116.701 1.00 56.12 O
ATOM 6 C5' G A2023 16.124 -50.368 117.977 1.00 56.44 C
ATOM 7 C4' G A2023 14.645 -50.671 118.086 1.00 56.65 C
ATOM 8 O4' G A2023 13.906 -49.805 117.180 1.00 56.24 O
ATOM 9 C3' G A2023 14.198 -52.083 117.675 1.00 56.90 C
ATOM 10 O3' G A2023 14.378 -53.067 118.685 1.00 57.43 O
ATOM 11 C2' G A2023 12.747 -51.868 117.317 1.00 56.86 C
ATOM 12 O2' G A2023 11.979 -51.731 118.492 1.00 57.24 O
ATOM 13 C1' G A2023 12.812 -50.512 116.628 1.00 56.33 C
ATOM 14 N9 G A2023 13.024 -50.663 115.183 1.00 55.94 N
ATOM 15 C8 G A2023 14.175 -50.469 114.477 1.00 55.60 C
ATOM 16 N7 G A2023 13.997 -50.714 113.206 1.00 55.33 N
ATOM 17 C5 G A2023 12.673 -51.097 113.081 1.00 55.50 C
ATOM 18 C6 G A2023 11.912 -51.500 111.964 1.00 55.37 C
ATOM 19 O6 G A2023 12.237 -51.597 110.780 1.00 55.07 O
ATOM 20 N1 G A2023 10.612 -51.818 112.309 1.00 55.66 N
ATOM 21 C2 G A2023 10.096 -51.754 113.562 1.00 56.02 C
ATOM 22 N2 G A2023 8.813 -52.095 113.716 1.00 56.28 N
ATOM 23 N3 G A2023 10.815 -51.374 114.600 1.00 56.14 N
ATOM 24 C4 G A2023 12.077 -51.066 114.292 1.00 55.87 C
ATOM 25 P U A2024 14.685 -54.599 118.281 1.00 63.12 P
ATOM 26 OP1 U A2024 14.877 -55.355 119.556 1.00 63.69 O
ATOM 27 OP2 U A2024 15.785 -54.573 117.285 1.00 62.75 O
ATOM 28 O5' U A2024 13.339 -55.067 117.565 1.00 63.14 O
TER
ATOM 1 O3' A B2035 6.861 -58.100 103.468 1.00 72.89 O
ATOM 2 P A B2036 6.250 -56.696 103.002 1.00 68.46 P
ATOM 3 OP1 A B2036 5.460 -56.957 101.766 1.00 68.39 O
ATOM 4 OP2 A B2036 7.392 -55.715 102.925 1.00 68.04 O
ATOM 5 O5' A B2036 5.278 -56.332 104.231 1.00 68.72 O
ATOM 6 C5' A B2036 4.530 -57.353 104.876 1.00 69.23 C
ATOM 7 C4' A B2036 4.579 -57.246 106.384 1.00 69.51 C
ATOM 8 O4' A B2036 5.927 -57.465 106.872 1.00 69.51 O
ATOM 9 C3' A B2036 4.195 -55.905 106.977 1.00 69.32 C
ATOM 10 O3' A B2036 2.810 -55.694 107.017 1.00 69.45 O
ATOM 11 C2' A B2036 4.834 -55.951 108.352 1.00 69.56 C
ATOM 12 O2' A B2036 4.044 -56.696 109.249 1.00 70.06 O
ATOM 13 C1' A B2036 6.118 -56.723 108.067 1.00 69.55 C
ATOM 14 N9 A B2036 7.258 -55.807 107.883 1.00 69.12 N
ATOM 15 C8 A B2036 7.889 -55.473 106.727 1.00 68.71 C
ATOM 16 N7 A B2036 8.876 -54.652 106.918 1.00 68.42 N
ATOM 17 C5 A B2036 8.886 -54.416 108.273 1.00 68.67 C
ATOM 18 C6 A B2036 9.696 -53.612 109.082 1.00 68.56 C
ATOM 19 N6 A B2036 10.702 -52.860 108.623 1.00 68.17 N
ATOM 20 N1 A B2036 9.431 -53.606 110.402 1.00 68.91 N
ATOM 21 C2 A B2036 8.425 -54.351 110.853 1.00 69.31 C
ATOM 22 N3 A B2036 7.608 -55.144 110.178 1.00 69.44 N
ATOM 23 C4 A B2036 7.890 -55.118 108.877 1.00 69.10 C
ATOM 24 P C B2037 2.230 -54.227 106.767 1.00 64.58 P
ATOM 25 OP1 C B2037 0.753 -54.348 106.663 1.00 64.79 O
ATOM 26 OP2 C B2037 2.979 -53.643 105.624 1.00 64.08 O
ATOM 27 O5' C B2037 2.611 -53.486 108.104 1.00 64.63 O
TER
ATOM 2 P G A2023 18.149 -50.429 116.279 1.00 55.83 P
ATOM 3 OP1 G A2023 19.087 -50.775 117.391 1.00 56.18 O
ATOM 4 OP2 G A2023 18.433 -50.958 114.919 1.00 55.55 O
ATOM 5 O5' G A2023 16.641 -50.753 116.701 1.00 56.12 O
ATOM 6 C5' G A2023 16.124 -50.368 117.977 1.00 56.44 C
ATOM 7 C4' G A2023 14.645 -50.671 118.086 1.00 56.65 C
ATOM 8 O4' G A2023 13.906 -49.805 117.180 1.00 56.24 O
ATOM 9 C3' G A2023 14.198 -52.083 117.675 1.00 56.90 C
ATOM 10 O3' G A2023 14.378 -53.067 118.685 1.00 57.43 O
ATOM 11 C2' G A2023 12.747 -51.868 117.317 1.00 56.86 C
ATOM 12 O2' G A2023 11.979 -51.731 118.492 1.00 57.24 O
ATOM 13 C1' G A2023 12.812 -50.512 116.628 1.00 56.33 C
ATOM 14 N9 G A2023 13.024 -50.663 115.183 1.00 55.94 N
ATOM 15 C8 G A2023 14.175 -50.469 114.477 1.00 55.60 C
ATOM 16 N7 G A2023 13.997 -50.714 113.206 1.00 55.33 N
ATOM 17 C5 G A2023 12.673 -51.097 113.081 1.00 55.50 C
ATOM 18 C6 G A2023 11.912 -51.500 111.964 1.00 55.37 C
ATOM 19 O6 G A2023 12.237 -51.597 110.780 1.00 55.07 O
ATOM 20 N1 G A2023 10.612 -51.818 112.309 1.00 55.66 N
ATOM 21 C2 G A2023 10.096 -51.754 113.562 1.00 56.02 C
ATOM 22 N2 G A2023 8.813 -52.095 113.716 1.00 56.28 N
ATOM 23 N3 G A2023 10.815 -51.374 114.600 1.00 56.14 N
ATOM 24 C4 G A2023 12.077 -51.066 114.292 1.00 55.87 C
ATOM 25 P U A2024 14.685 -54.599 118.281 1.00 63.12 P
ATOM 26 OP1 U A2024 14.877 -55.355 119.556 1.00 63.69 O
ATOM 27 OP2 U A2024 15.785 -54.573 117.285 1.00 62.75 O
ATOM 28 O5' U A2024 13.339 -55.067 117.565 1.00 63.14 O
TER
ATOM 1 O3' A B2035 6.861 -58.100 103.468 1.00 72.89 O
ATOM 2 P A B2036 6.250 -56.696 103.002 1.00 68.46 P
ATOM 3 OP1 A B2036 5.460 -56.957 101.766 1.00 68.39 O
ATOM 4 OP2 A B2036 7.392 -55.715 102.925 1.00 68.04 O
ATOM 5 O5' A B2036 5.278 -56.332 104.231 1.00 68.72 O
ATOM 6 C5' A B2036 4.530 -57.353 104.876 1.00 69.23 C
ATOM 7 C4' A B2036 4.579 -57.246 106.384 1.00 69.51 C
ATOM 8 O4' A B2036 5.927 -57.465 106.872 1.00 69.51 O
ATOM 9 C3' A B2036 4.195 -55.905 106.977 1.00 69.32 C
ATOM 10 O3' A B2036 2.810 -55.694 107.017 1.00 69.45 O
ATOM 11 C2' A B2036 4.834 -55.951 108.352 1.00 69.56 C
ATOM 12 O2' A B2036 4.044 -56.696 109.249 1.00 70.06 O
ATOM 13 C1' A B2036 6.118 -56.723 108.067 1.00 69.55 C
ATOM 14 N9 A B2036 7.258 -55.807 107.883 1.00 69.12 N
ATOM 15 C8 A B2036 7.889 -55.473 106.727 1.00 68.71 C
ATOM 16 N7 A B2036 8.876 -54.652 106.918 1.00 68.42 N
ATOM 17 C5 A B2036 8.886 -54.416 108.273 1.00 68.67 C
ATOM 18 C6 A B2036 9.696 -53.612 109.082 1.00 68.56 C
ATOM 19 N6 A B2036 10.702 -52.860 108.623 1.00 68.17 N
ATOM 20 N1 A B2036 9.431 -53.606 110.402 1.00 68.91 N
ATOM 21 C2 A B2036 8.425 -54.351 110.853 1.00 69.31 C
ATOM 22 N3 A B2036 7.608 -55.144 110.178 1.00 69.44 N
ATOM 23 C4 A B2036 7.890 -55.118 108.877 1.00 69.10 C
ATOM 24 P C B2037 2.230 -54.227 106.767 1.00 64.58 P
ATOM 25 OP1 C B2037 0.753 -54.348 106.663 1.00 64.79 O
ATOM 26 OP2 C B2037 2.979 -53.643 105.624 1.00 64.08 O
ATOM 27 O5' C B2037 2.611 -53.486 108.104 1.00 64.63 O
TER
Atoms:
OP1: (19.087,-50.775,117.391)
OP2: (18.433,-50.958,114.919)
C3': (14.198,-52.083,117.675)
C1': (12.812,-50.512,116.628)
C5': (16.124,-50.368,117.977)
O6: (12.237,-51.597,110.780)
O4': (13.906,-49.805,117.180)
C8: (14.175,-50.469,114.477)
C2: (10.096,-51.754,113.562)
C6: (11.912,-51.500,111.964)
C5: (12.673,-51.097,113.081)
C4: (12.077,-51.066,114.292)
P: (18.149,-50.429,116.279)
C4': (14.645,-50.671,118.086)
C2': (12.747,-51.868,117.317)
O2': (11.979,-51.731,118.492)
N1: (10.612,-51.818,112.309)
N2: (8.813,-52.095,113.716)
N3: (10.815,-51.374,114.600)
N7: (13.997,-50.714,113.206)
N9: (13.024,-50.663,115.183)
O5': (16.641,-50.753,116.701)
O3': (14.378,-53.067,118.685)
OP2: (18.433,-50.958,114.919)
C3': (14.198,-52.083,117.675)
C1': (12.812,-50.512,116.628)
C5': (16.124,-50.368,117.977)
O6: (12.237,-51.597,110.780)
O4': (13.906,-49.805,117.180)
C8: (14.175,-50.469,114.477)
C2: (10.096,-51.754,113.562)
C6: (11.912,-51.500,111.964)
C5: (12.673,-51.097,113.081)
C4: (12.077,-51.066,114.292)
P: (18.149,-50.429,116.279)
C4': (14.645,-50.671,118.086)
C2': (12.747,-51.868,117.317)
O2': (11.979,-51.731,118.492)
N1: (10.612,-51.818,112.309)
N2: (8.813,-52.095,113.716)
N3: (10.815,-51.374,114.600)
N7: (13.997,-50.714,113.206)
N9: (13.024,-50.663,115.183)
O5': (16.641,-50.753,116.701)
O3': (14.378,-53.067,118.685)
OP1: (5.460,-56.957,101.766)
OP2: (7.392,-55.715,102.925)
C3': (4.195,-55.905,106.977)
C1': (6.118,-56.723,108.067)
C5': (4.530,-57.353,104.876)
O4': (5.927,-57.465,106.872)
C8: (7.889,-55.473,106.727)
O2': (4.044,-56.696,109.249)
C6: (9.696,-53.612,109.082)
C5: (8.886,-54.416,108.273)
C4: (7.890,-55.118,108.877)
P: (6.250,-56.696,103.002)
C4': (4.579,-57.246,106.384)
C2': (4.834,-55.951,108.352)
C2: (8.425,-54.351,110.853)
N1: (9.431,-53.606,110.402)
N3: (7.608,-55.144,110.178)
N6: (10.702,-52.860,108.623)
N7: (8.876,-54.652,106.918)
N9: (7.258,-55.807,107.883)
O5': (5.278,-56.332,104.231)
O3': (2.810,-55.694,107.017)
OP2: (7.392,-55.715,102.925)
C3': (4.195,-55.905,106.977)
C1': (6.118,-56.723,108.067)
C5': (4.530,-57.353,104.876)
O4': (5.927,-57.465,106.872)
C8: (7.889,-55.473,106.727)
O2': (4.044,-56.696,109.249)
C6: (9.696,-53.612,109.082)
C5: (8.886,-54.416,108.273)
C4: (7.890,-55.118,108.877)
P: (6.250,-56.696,103.002)
C4': (4.579,-57.246,106.384)
C2': (4.834,-55.951,108.352)
C2: (8.425,-54.351,110.853)
N1: (9.431,-53.606,110.402)
N3: (7.608,-55.144,110.178)
N6: (10.702,-52.860,108.623)
N7: (8.876,-54.652,106.918)
N9: (7.258,-55.807,107.883)
O5': (5.278,-56.332,104.231)
O3': (2.810,-55.694,107.017)
Image (generated by PyMOL):