Doublet info:
Details
Nucleotide types:
AC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3D2V:B56:B25
Extra
PDB:
ATOM 1 O3' U A 55 7.157 33.951 7.463 1.00 45.31 O
ATOM 2 P A A 56 8.089 32.763 8.004 1.00 44.52 P
ATOM 3 OP1 A A 56 8.010 32.776 9.481 1.00 51.02 O
ATOM 4 OP2 A A 56 9.404 32.849 7.329 1.00 44.89 O
ATOM 5 O5' A A 56 7.340 31.453 7.476 1.00 41.20 O
ATOM 6 C5' A A 56 8.051 30.223 7.375 1.00 44.95 C
ATOM 7 C4' A A 56 7.168 29.144 6.775 1.00 39.76 C
ATOM 8 O4' A A 56 6.036 28.928 7.650 1.00 42.59 O
ATOM 9 C3' A A 56 6.559 29.496 5.426 1.00 40.68 C
ATOM 10 O3' A A 56 7.429 29.094 4.379 1.00 38.63 O
ATOM 11 C2' A A 56 5.273 28.677 5.412 1.00 34.55 C
ATOM 12 O2' A A 56 5.495 27.343 4.995 1.00 44.43 O
ATOM 13 C1' A A 56 4.872 28.682 6.883 1.00 42.61 C
ATOM 14 N9 A A 56 3.868 29.675 7.252 1.00 37.54 N
ATOM 15 C8 A A 56 4.047 30.763 8.058 1.00 34.89 C
ATOM 16 N7 A A 56 2.962 31.477 8.227 1.00 35.94 N
ATOM 17 C5 A A 56 2.003 30.810 7.482 1.00 33.72 C
ATOM 18 C6 A A 56 0.638 31.061 7.249 1.00 33.23 C
ATOM 19 N6 A A 56 -0.020 32.101 7.770 1.00 33.26 N
ATOM 20 N1 A A 56 -0.028 30.196 6.457 1.00 33.03 N
ATOM 21 C2 A A 56 0.632 29.157 5.936 1.00 34.49 C
ATOM 22 N3 A A 56 1.911 28.817 6.083 1.00 39.08 N
ATOM 23 C4 A A 56 2.546 29.695 6.876 1.00 35.95 C
ATOM 24 P A A 57 7.632 30.071 3.126 1.00 39.75 P
ATOM 25 OP1 A A 57 8.630 29.447 2.229 1.00 38.76 O
ATOM 26 OP2 A A 57 7.835 31.441 3.641 1.00 38.82 O
ATOM 27 O5' A A 57 6.214 29.991 2.392 1.00 36.66 O
TER
ATOM 1 O3' G B 24 -4.584 32.215 12.423 1.00 35.17 O
ATOM 2 P C B 25 -4.943 33.687 11.903 1.00 35.98 P
ATOM 3 OP1 C B 25 -4.325 34.644 12.848 1.00 35.19 O
ATOM 4 OP2 C B 25 -6.397 33.753 11.632 1.00 28.55 O
ATOM 5 O5' C B 25 -4.159 33.777 10.511 1.00 32.02 O
ATOM 6 C5' C B 25 -2.741 33.895 10.486 1.00 33.12 C
ATOM 7 C4' C B 25 -2.269 34.396 9.133 1.00 35.82 C
ATOM 8 O4' C B 25 -2.510 33.386 8.118 1.00 31.25 O
ATOM 9 C3' C B 25 -2.989 35.628 8.598 1.00 32.18 C
ATOM 10 O3' C B 25 -2.444 36.816 9.156 1.00 34.96 O
ATOM 11 C2' C B 25 -2.652 35.512 7.119 1.00 31.37 C
ATOM 12 O2' C B 25 -1.296 35.811 6.865 1.00 30.15 O
ATOM 13 C1' C B 25 -2.866 34.019 6.901 1.00 33.43 C
ATOM 14 N1 C B 25 -4.264 33.633 6.536 1.00 31.63 N
ATOM 15 C2 C B 25 -4.680 33.747 5.203 1.00 33.33 C
ATOM 16 O2 C B 25 -3.882 34.176 4.360 1.00 31.20 O
ATOM 17 N3 C B 25 -5.946 33.383 4.876 1.00 27.95 N
ATOM 18 C4 C B 25 -6.773 32.924 5.817 1.00 33.83 C
ATOM 19 N4 C B 25 -8.012 32.579 5.449 1.00 30.46 N
ATOM 20 C5 C B 25 -6.367 32.800 7.180 1.00 33.01 C
ATOM 21 C6 C B 25 -5.117 33.161 7.491 1.00 31.17 C
ATOM 22 P U B 26 -3.383 38.092 9.386 1.00 33.98 P
ATOM 23 OP1 U B 26 -2.613 39.071 10.187 1.00 40.34 O
ATOM 24 OP2 U B 26 -4.707 37.620 9.852 1.00 33.04 O
ATOM 25 O5' U B 26 -3.556 38.700 7.920 1.00 37.31 O
TER
ATOM 2 P A A 56 8.089 32.763 8.004 1.00 44.52 P
ATOM 3 OP1 A A 56 8.010 32.776 9.481 1.00 51.02 O
ATOM 4 OP2 A A 56 9.404 32.849 7.329 1.00 44.89 O
ATOM 5 O5' A A 56 7.340 31.453 7.476 1.00 41.20 O
ATOM 6 C5' A A 56 8.051 30.223 7.375 1.00 44.95 C
ATOM 7 C4' A A 56 7.168 29.144 6.775 1.00 39.76 C
ATOM 8 O4' A A 56 6.036 28.928 7.650 1.00 42.59 O
ATOM 9 C3' A A 56 6.559 29.496 5.426 1.00 40.68 C
ATOM 10 O3' A A 56 7.429 29.094 4.379 1.00 38.63 O
ATOM 11 C2' A A 56 5.273 28.677 5.412 1.00 34.55 C
ATOM 12 O2' A A 56 5.495 27.343 4.995 1.00 44.43 O
ATOM 13 C1' A A 56 4.872 28.682 6.883 1.00 42.61 C
ATOM 14 N9 A A 56 3.868 29.675 7.252 1.00 37.54 N
ATOM 15 C8 A A 56 4.047 30.763 8.058 1.00 34.89 C
ATOM 16 N7 A A 56 2.962 31.477 8.227 1.00 35.94 N
ATOM 17 C5 A A 56 2.003 30.810 7.482 1.00 33.72 C
ATOM 18 C6 A A 56 0.638 31.061 7.249 1.00 33.23 C
ATOM 19 N6 A A 56 -0.020 32.101 7.770 1.00 33.26 N
ATOM 20 N1 A A 56 -0.028 30.196 6.457 1.00 33.03 N
ATOM 21 C2 A A 56 0.632 29.157 5.936 1.00 34.49 C
ATOM 22 N3 A A 56 1.911 28.817 6.083 1.00 39.08 N
ATOM 23 C4 A A 56 2.546 29.695 6.876 1.00 35.95 C
ATOM 24 P A A 57 7.632 30.071 3.126 1.00 39.75 P
ATOM 25 OP1 A A 57 8.630 29.447 2.229 1.00 38.76 O
ATOM 26 OP2 A A 57 7.835 31.441 3.641 1.00 38.82 O
ATOM 27 O5' A A 57 6.214 29.991 2.392 1.00 36.66 O
TER
ATOM 1 O3' G B 24 -4.584 32.215 12.423 1.00 35.17 O
ATOM 2 P C B 25 -4.943 33.687 11.903 1.00 35.98 P
ATOM 3 OP1 C B 25 -4.325 34.644 12.848 1.00 35.19 O
ATOM 4 OP2 C B 25 -6.397 33.753 11.632 1.00 28.55 O
ATOM 5 O5' C B 25 -4.159 33.777 10.511 1.00 32.02 O
ATOM 6 C5' C B 25 -2.741 33.895 10.486 1.00 33.12 C
ATOM 7 C4' C B 25 -2.269 34.396 9.133 1.00 35.82 C
ATOM 8 O4' C B 25 -2.510 33.386 8.118 1.00 31.25 O
ATOM 9 C3' C B 25 -2.989 35.628 8.598 1.00 32.18 C
ATOM 10 O3' C B 25 -2.444 36.816 9.156 1.00 34.96 O
ATOM 11 C2' C B 25 -2.652 35.512 7.119 1.00 31.37 C
ATOM 12 O2' C B 25 -1.296 35.811 6.865 1.00 30.15 O
ATOM 13 C1' C B 25 -2.866 34.019 6.901 1.00 33.43 C
ATOM 14 N1 C B 25 -4.264 33.633 6.536 1.00 31.63 N
ATOM 15 C2 C B 25 -4.680 33.747 5.203 1.00 33.33 C
ATOM 16 O2 C B 25 -3.882 34.176 4.360 1.00 31.20 O
ATOM 17 N3 C B 25 -5.946 33.383 4.876 1.00 27.95 N
ATOM 18 C4 C B 25 -6.773 32.924 5.817 1.00 33.83 C
ATOM 19 N4 C B 25 -8.012 32.579 5.449 1.00 30.46 N
ATOM 20 C5 C B 25 -6.367 32.800 7.180 1.00 33.01 C
ATOM 21 C6 C B 25 -5.117 33.161 7.491 1.00 31.17 C
ATOM 22 P U B 26 -3.383 38.092 9.386 1.00 33.98 P
ATOM 23 OP1 U B 26 -2.613 39.071 10.187 1.00 40.34 O
ATOM 24 OP2 U B 26 -4.707 37.620 9.852 1.00 33.04 O
ATOM 25 O5' U B 26 -3.556 38.700 7.920 1.00 37.31 O
TER
Atoms:
OP1: (8.010,32.776,9.481)
OP2: (9.404,32.849,7.329)
C3': (6.559,29.496,5.426)
C1': (4.872,28.682,6.883)
C5': (8.051,30.223,7.375)
O4': (6.036,28.928,7.650)
C8: (4.047,30.763,8.058)
O2': (5.495,27.343,4.995)
C6: (0.638,31.061,7.249)
C5: (2.003,30.810,7.482)
C4: (2.546,29.695,6.876)
P: (8.089,32.763,8.004)
C4': (7.168,29.144,6.775)
C2': (5.273,28.677,5.412)
C2: (0.632,29.157,5.936)
N1: (-0.028,30.196,6.457)
N3: (1.911,28.817,6.083)
N6: (-0.020,32.101,7.770)
N7: (2.962,31.477,8.227)
N9: (3.868,29.675,7.252)
O5': (7.340,31.453,7.476)
O3': (7.429,29.094,4.379)
OP2: (9.404,32.849,7.329)
C3': (6.559,29.496,5.426)
C1': (4.872,28.682,6.883)
C5': (8.051,30.223,7.375)
O4': (6.036,28.928,7.650)
C8: (4.047,30.763,8.058)
O2': (5.495,27.343,4.995)
C6: (0.638,31.061,7.249)
C5: (2.003,30.810,7.482)
C4: (2.546,29.695,6.876)
P: (8.089,32.763,8.004)
C4': (7.168,29.144,6.775)
C2': (5.273,28.677,5.412)
C2: (0.632,29.157,5.936)
N1: (-0.028,30.196,6.457)
N3: (1.911,28.817,6.083)
N6: (-0.020,32.101,7.770)
N7: (2.962,31.477,8.227)
N9: (3.868,29.675,7.252)
O5': (7.340,31.453,7.476)
O3': (7.429,29.094,4.379)
C2: (-4.680,33.747,5.203)
OP1: (-4.325,34.644,12.848)
OP2: (-6.397,33.753,11.632)
C4: (-6.773,32.924,5.817)
O5': (-4.159,33.777,10.511)
C3': (-2.989,35.628,8.598)
C1': (-2.866,34.019,6.901)
O4': (-2.510,33.386,8.118)
C5': (-2.741,33.895,10.486)
P: (-4.943,33.687,11.903)
O2: (-3.882,34.176,4.360)
C4': (-2.269,34.396,9.133)
C2': (-2.652,35.512,7.119)
O2': (-1.296,35.811,6.865)
N1: (-4.264,33.633,6.536)
N3: (-5.946,33.383,4.876)
N4: (-8.012,32.579,5.449)
C6: (-5.117,33.161,7.491)
C5: (-6.367,32.800,7.180)
O3': (-2.444,36.816,9.156)
OP1: (-4.325,34.644,12.848)
OP2: (-6.397,33.753,11.632)
C4: (-6.773,32.924,5.817)
O5': (-4.159,33.777,10.511)
C3': (-2.989,35.628,8.598)
C1': (-2.866,34.019,6.901)
O4': (-2.510,33.386,8.118)
C5': (-2.741,33.895,10.486)
P: (-4.943,33.687,11.903)
O2: (-3.882,34.176,4.360)
C4': (-2.269,34.396,9.133)
C2': (-2.652,35.512,7.119)
O2': (-1.296,35.811,6.865)
N1: (-4.264,33.633,6.536)
N3: (-5.946,33.383,4.876)
N4: (-8.012,32.579,5.449)
C6: (-5.117,33.161,7.491)
C5: (-6.367,32.800,7.180)
O3': (-2.444,36.816,9.156)
Image (generated by PyMOL):