Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3SD3:A43:A33
Extra
PDB:
ATOM 1 O3' C A 42 19.911 -12.647 31.614 1.00 51.50 O
ATOM 2 P G A 43 18.590 -11.844 31.170 1.00 46.79 P
ATOM 3 OP1 G A 43 19.035 -10.552 30.594 1.00 50.22 O
ATOM 4 OP2 G A 43 17.674 -11.825 32.337 1.00 43.25 O
ATOM 5 O5' G A 43 17.987 -12.767 30.023 1.00 33.45 O
ATOM 6 C5' G A 43 18.716 -13.013 28.830 1.00 35.23 C
ATOM 7 C4' G A 43 17.932 -13.878 27.879 1.00 36.72 C
ATOM 8 O4' G A 43 17.747 -15.197 28.458 1.00 35.93 O
ATOM 9 C3' G A 43 16.519 -13.406 27.567 1.00 35.19 C
ATOM 10 O3' G A 43 16.480 -12.406 26.564 1.00 32.80 O
ATOM 11 C2' G A 43 15.813 -14.696 27.172 1.00 34.87 C
ATOM 12 O2' G A 43 16.133 -15.057 25.836 1.00 36.35 O
ATOM 13 C1' G A 43 16.474 -15.701 28.116 1.00 33.01 C
ATOM 14 N9 G A 43 15.697 -15.888 29.356 1.00 30.38 N
ATOM 15 C8 G A 43 16.095 -15.629 30.645 1.00 30.70 C
ATOM 16 N7 G A 43 15.172 -15.901 31.530 1.00 29.87 N
ATOM 17 C5 G A 43 14.104 -16.375 30.779 1.00 29.75 C
ATOM 18 C6 G A 43 12.821 -16.829 31.178 1.00 28.57 C
ATOM 19 O6 G A 43 12.353 -16.910 32.319 1.00 28.02 O
ATOM 20 N1 G A 43 12.050 -17.213 30.085 1.00 27.84 N
ATOM 21 C2 G A 43 12.460 -17.171 28.775 1.00 26.12 C
ATOM 22 N2 G A 43 11.577 -17.585 27.854 1.00 22.89 N
ATOM 23 N3 G A 43 13.652 -16.750 28.391 1.00 28.81 N
ATOM 24 C4 G A 43 14.415 -16.372 29.436 1.00 28.85 C
ATOM 25 P U A 44 15.399 -11.222 26.644 1.00 34.14 P
ATOM 26 OP1 U A 44 15.563 -10.399 25.420 1.00 38.59 O
ATOM 27 OP2 U A 44 15.560 -10.572 27.969 1.00 32.24 O
ATOM 28 O5' U A 44 14.014 -12.002 26.590 1.00 30.94 O
TER
ATOM 1 O3' A B 32 1.833 -18.422 35.889 1.00 31.86 O
ATOM 2 P A B 33 2.382 -19.926 35.704 1.00 36.03 P
ATOM 3 OP1 A B 33 1.252 -20.839 36.004 1.00 38.05 O
ATOM 4 OP2 A B 33 3.626 -20.047 36.502 1.00 34.82 O
ATOM 5 O5' A B 33 2.727 -19.988 34.153 1.00 29.80 O
ATOM 6 C5' A B 33 1.719 -19.784 33.176 1.00 30.25 C
ATOM 7 C4' A B 33 2.300 -19.729 31.789 1.00 30.57 C
ATOM 8 O4' A B 33 3.108 -18.530 31.639 1.00 29.97 O
ATOM 9 C3' A B 33 3.249 -20.855 31.422 1.00 29.91 C
ATOM 10 O3' A B 33 2.581 -22.049 31.053 1.00 33.76 O
ATOM 11 C2' A B 33 4.070 -20.233 30.301 1.00 27.59 C
ATOM 12 O2' A B 33 3.324 -20.189 29.094 1.00 24.80 O
ATOM 13 C1' A B 33 4.227 -18.805 30.821 1.00 29.04 C
ATOM 14 N9 A B 33 5.446 -18.658 31.636 1.00 25.77 N
ATOM 15 C8 A B 33 5.592 -18.875 32.981 1.00 22.80 C
ATOM 16 N7 A B 33 6.813 -18.666 33.414 1.00 23.35 N
ATOM 17 C5 A B 33 7.516 -18.298 32.277 1.00 22.05 C
ATOM 18 C6 A B 33 8.861 -17.948 32.066 1.00 24.44 C
ATOM 19 N6 A B 33 9.775 -17.917 33.042 1.00 26.82 N
ATOM 20 N1 A B 33 9.238 -17.632 30.806 1.00 25.30 N
ATOM 21 C2 A B 33 8.317 -17.668 29.832 1.00 25.89 C
ATOM 22 N3 A B 33 7.024 -17.983 29.908 1.00 24.84 N
ATOM 23 C4 A B 33 6.685 -18.290 31.173 1.00 24.77 C
ATOM 24 P U B 34 3.411 -23.411 30.856 1.00 37.06 P
ATOM 25 OP1 U B 34 2.455 -24.442 30.386 1.00 39.12 O
ATOM 26 OP2 U B 34 4.161 -23.655 32.111 1.00 33.43 O
ATOM 27 O5' U B 34 4.419 -23.031 29.685 1.00 27.78 O
TER
ATOM 2 P G A 43 18.590 -11.844 31.170 1.00 46.79 P
ATOM 3 OP1 G A 43 19.035 -10.552 30.594 1.00 50.22 O
ATOM 4 OP2 G A 43 17.674 -11.825 32.337 1.00 43.25 O
ATOM 5 O5' G A 43 17.987 -12.767 30.023 1.00 33.45 O
ATOM 6 C5' G A 43 18.716 -13.013 28.830 1.00 35.23 C
ATOM 7 C4' G A 43 17.932 -13.878 27.879 1.00 36.72 C
ATOM 8 O4' G A 43 17.747 -15.197 28.458 1.00 35.93 O
ATOM 9 C3' G A 43 16.519 -13.406 27.567 1.00 35.19 C
ATOM 10 O3' G A 43 16.480 -12.406 26.564 1.00 32.80 O
ATOM 11 C2' G A 43 15.813 -14.696 27.172 1.00 34.87 C
ATOM 12 O2' G A 43 16.133 -15.057 25.836 1.00 36.35 O
ATOM 13 C1' G A 43 16.474 -15.701 28.116 1.00 33.01 C
ATOM 14 N9 G A 43 15.697 -15.888 29.356 1.00 30.38 N
ATOM 15 C8 G A 43 16.095 -15.629 30.645 1.00 30.70 C
ATOM 16 N7 G A 43 15.172 -15.901 31.530 1.00 29.87 N
ATOM 17 C5 G A 43 14.104 -16.375 30.779 1.00 29.75 C
ATOM 18 C6 G A 43 12.821 -16.829 31.178 1.00 28.57 C
ATOM 19 O6 G A 43 12.353 -16.910 32.319 1.00 28.02 O
ATOM 20 N1 G A 43 12.050 -17.213 30.085 1.00 27.84 N
ATOM 21 C2 G A 43 12.460 -17.171 28.775 1.00 26.12 C
ATOM 22 N2 G A 43 11.577 -17.585 27.854 1.00 22.89 N
ATOM 23 N3 G A 43 13.652 -16.750 28.391 1.00 28.81 N
ATOM 24 C4 G A 43 14.415 -16.372 29.436 1.00 28.85 C
ATOM 25 P U A 44 15.399 -11.222 26.644 1.00 34.14 P
ATOM 26 OP1 U A 44 15.563 -10.399 25.420 1.00 38.59 O
ATOM 27 OP2 U A 44 15.560 -10.572 27.969 1.00 32.24 O
ATOM 28 O5' U A 44 14.014 -12.002 26.590 1.00 30.94 O
TER
ATOM 1 O3' A B 32 1.833 -18.422 35.889 1.00 31.86 O
ATOM 2 P A B 33 2.382 -19.926 35.704 1.00 36.03 P
ATOM 3 OP1 A B 33 1.252 -20.839 36.004 1.00 38.05 O
ATOM 4 OP2 A B 33 3.626 -20.047 36.502 1.00 34.82 O
ATOM 5 O5' A B 33 2.727 -19.988 34.153 1.00 29.80 O
ATOM 6 C5' A B 33 1.719 -19.784 33.176 1.00 30.25 C
ATOM 7 C4' A B 33 2.300 -19.729 31.789 1.00 30.57 C
ATOM 8 O4' A B 33 3.108 -18.530 31.639 1.00 29.97 O
ATOM 9 C3' A B 33 3.249 -20.855 31.422 1.00 29.91 C
ATOM 10 O3' A B 33 2.581 -22.049 31.053 1.00 33.76 O
ATOM 11 C2' A B 33 4.070 -20.233 30.301 1.00 27.59 C
ATOM 12 O2' A B 33 3.324 -20.189 29.094 1.00 24.80 O
ATOM 13 C1' A B 33 4.227 -18.805 30.821 1.00 29.04 C
ATOM 14 N9 A B 33 5.446 -18.658 31.636 1.00 25.77 N
ATOM 15 C8 A B 33 5.592 -18.875 32.981 1.00 22.80 C
ATOM 16 N7 A B 33 6.813 -18.666 33.414 1.00 23.35 N
ATOM 17 C5 A B 33 7.516 -18.298 32.277 1.00 22.05 C
ATOM 18 C6 A B 33 8.861 -17.948 32.066 1.00 24.44 C
ATOM 19 N6 A B 33 9.775 -17.917 33.042 1.00 26.82 N
ATOM 20 N1 A B 33 9.238 -17.632 30.806 1.00 25.30 N
ATOM 21 C2 A B 33 8.317 -17.668 29.832 1.00 25.89 C
ATOM 22 N3 A B 33 7.024 -17.983 29.908 1.00 24.84 N
ATOM 23 C4 A B 33 6.685 -18.290 31.173 1.00 24.77 C
ATOM 24 P U B 34 3.411 -23.411 30.856 1.00 37.06 P
ATOM 25 OP1 U B 34 2.455 -24.442 30.386 1.00 39.12 O
ATOM 26 OP2 U B 34 4.161 -23.655 32.111 1.00 33.43 O
ATOM 27 O5' U B 34 4.419 -23.031 29.685 1.00 27.78 O
TER
Atoms:
OP1: (19.035,-10.552,30.594)
OP2: (17.674,-11.825,32.337)
C3': (16.519,-13.406,27.567)
C1': (16.474,-15.701,28.116)
C5': (18.716,-13.013,28.830)
O6: (12.353,-16.910,32.319)
O4': (17.747,-15.197,28.458)
C8: (16.095,-15.629,30.645)
C2: (12.460,-17.171,28.775)
C6: (12.821,-16.829,31.178)
C5: (14.104,-16.375,30.779)
C4: (14.415,-16.372,29.436)
P: (18.590,-11.844,31.170)
C4': (17.932,-13.878,27.879)
C2': (15.813,-14.696,27.172)
O2': (16.133,-15.057,25.836)
N1: (12.050,-17.213,30.085)
N2: (11.577,-17.585,27.854)
N3: (13.652,-16.750,28.391)
N7: (15.172,-15.901,31.530)
N9: (15.697,-15.888,29.356)
O5': (17.987,-12.767,30.023)
O3': (16.480,-12.406,26.564)
OP2: (17.674,-11.825,32.337)
C3': (16.519,-13.406,27.567)
C1': (16.474,-15.701,28.116)
C5': (18.716,-13.013,28.830)
O6: (12.353,-16.910,32.319)
O4': (17.747,-15.197,28.458)
C8: (16.095,-15.629,30.645)
C2: (12.460,-17.171,28.775)
C6: (12.821,-16.829,31.178)
C5: (14.104,-16.375,30.779)
C4: (14.415,-16.372,29.436)
P: (18.590,-11.844,31.170)
C4': (17.932,-13.878,27.879)
C2': (15.813,-14.696,27.172)
O2': (16.133,-15.057,25.836)
N1: (12.050,-17.213,30.085)
N2: (11.577,-17.585,27.854)
N3: (13.652,-16.750,28.391)
N7: (15.172,-15.901,31.530)
N9: (15.697,-15.888,29.356)
O5': (17.987,-12.767,30.023)
O3': (16.480,-12.406,26.564)
OP1: (1.252,-20.839,36.004)
OP2: (3.626,-20.047,36.502)
C3': (3.249,-20.855,31.422)
C1': (4.227,-18.805,30.821)
C5': (1.719,-19.784,33.176)
O4': (3.108,-18.530,31.639)
C8: (5.592,-18.875,32.981)
O2': (3.324,-20.189,29.094)
C6: (8.861,-17.948,32.066)
C5: (7.516,-18.298,32.277)
C4: (6.685,-18.290,31.173)
P: (2.382,-19.926,35.704)
C4': (2.300,-19.729,31.789)
C2': (4.070,-20.233,30.301)
C2: (8.317,-17.668,29.832)
N1: (9.238,-17.632,30.806)
N3: (7.024,-17.983,29.908)
N6: (9.775,-17.917,33.042)
N7: (6.813,-18.666,33.414)
N9: (5.446,-18.658,31.636)
O5': (2.727,-19.988,34.153)
O3': (2.581,-22.049,31.053)
OP2: (3.626,-20.047,36.502)
C3': (3.249,-20.855,31.422)
C1': (4.227,-18.805,30.821)
C5': (1.719,-19.784,33.176)
O4': (3.108,-18.530,31.639)
C8: (5.592,-18.875,32.981)
O2': (3.324,-20.189,29.094)
C6: (8.861,-17.948,32.066)
C5: (7.516,-18.298,32.277)
C4: (6.685,-18.290,31.173)
P: (2.382,-19.926,35.704)
C4': (2.300,-19.729,31.789)
C2': (4.070,-20.233,30.301)
C2: (8.317,-17.668,29.832)
N1: (9.238,-17.632,30.806)
N3: (7.024,-17.983,29.908)
N6: (9.775,-17.917,33.042)
N7: (6.813,-18.666,33.414)
N9: (5.446,-18.658,31.636)
O5': (2.727,-19.988,34.153)
O3': (2.581,-22.049,31.053)
Image (generated by PyMOL):