Doublet info:
Details
Nucleotide types:
AC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1KD3:B6:A3
Extra
PDB:
ATOM 1 O3' C A 5 9.339 -10.287 71.291 1.00 29.98 O
ATOM 2 P A A 6 8.061 -9.327 71.283 1.00 31.57 P
ATOM 3 OP1 A A 6 7.226 -9.706 70.113 1.00 32.66 O
ATOM 4 OP2 A A 6 8.496 -7.920 71.452 1.00 29.45 O
ATOM 5 O5' A A 6 7.302 -9.773 72.605 1.00 30.34 O
ATOM 6 C5' A A 6 6.522 -8.856 73.338 1.00 26.05 C
ATOM 7 C4' A A 6 6.052 -9.500 74.610 1.00 24.30 C
ATOM 8 O4' A A 6 7.187 -9.753 75.477 1.00 23.68 O
ATOM 9 C3' A A 6 5.143 -8.611 75.428 1.00 22.68 C
ATOM 10 O3' A A 6 3.828 -8.773 74.949 1.00 22.93 O
ATOM 11 C2' A A 6 5.341 -9.154 76.834 1.00 22.41 C
ATOM 12 O2' A A 6 4.642 -10.361 77.051 1.00 22.65 O
ATOM 13 C1' A A 6 6.843 -9.441 76.817 1.00 21.89 C
ATOM 14 N9 A A 6 7.644 -8.292 77.231 1.00 21.11 N
ATOM 15 C8 A A 6 8.622 -7.643 76.516 1.00 20.71 C
ATOM 16 N7 A A 6 9.188 -6.655 77.168 1.00 21.56 N
ATOM 17 C5 A A 6 8.533 -6.648 78.392 1.00 19.97 C
ATOM 18 C6 A A 6 8.668 -5.837 79.532 1.00 21.04 C
ATOM 19 N6 A A 6 9.558 -4.845 79.636 1.00 22.71 N
ATOM 20 N1 A A 6 7.850 -6.089 80.582 1.00 19.57 N
ATOM 21 C2 A A 6 6.969 -7.092 80.483 1.00 19.78 C
ATOM 22 N3 A A 6 6.754 -7.926 79.469 1.00 18.31 N
ATOM 23 C4 A A 6 7.576 -7.647 78.442 1.00 19.43 C
ATOM 24 P G A 7 2.959 -7.483 74.609 1.00 24.12 P
ATOM 25 OP1 G A 7 1.625 -7.977 74.181 1.00 23.19 O
ATOM 26 OP2 G A 7 3.734 -6.573 73.714 1.00 21.45 O
ATOM 27 O5' G A 7 2.825 -6.768 76.023 1.00 23.05 O
TER
ATOM 1 O3' U B 2 13.101 3.353 80.942 1.00 26.03 O
ATOM 2 P C B 3 14.344 2.469 81.446 1.00 25.90 P
ATOM 3 OP1 C B 3 14.720 2.971 82.790 1.00 24.81 O
ATOM 4 OP2 C B 3 15.355 2.427 80.365 1.00 24.89 O
ATOM 5 O5' C B 3 13.747 1.000 81.590 1.00 24.86 O
ATOM 6 C5' C B 3 12.660 0.734 82.467 1.00 24.76 C
ATOM 7 C4' C B 3 12.096 -0.636 82.187 1.00 24.29 C
ATOM 8 O4' C B 3 11.523 -0.661 80.853 1.00 22.81 O
ATOM 9 C3' C B 3 13.115 -1.763 82.167 1.00 24.43 C
ATOM 10 O3' C B 3 13.388 -2.225 83.481 1.00 27.37 O
ATOM 11 C2' C B 3 12.403 -2.811 81.326 1.00 23.87 C
ATOM 12 O2' C B 3 11.411 -3.507 82.051 1.00 22.31 O
ATOM 13 C1' C B 3 11.738 -1.932 80.265 1.00 22.23 C
ATOM 14 N1 C B 3 12.576 -1.754 79.067 1.00 21.92 N
ATOM 15 C2 C B 3 12.539 -2.733 78.078 1.00 21.39 C
ATOM 16 O2 C B 3 11.798 -3.710 78.236 1.00 21.74 O
ATOM 17 N3 C B 3 13.308 -2.594 76.976 1.00 22.00 N
ATOM 18 C4 C B 3 14.087 -1.522 76.837 1.00 22.19 C
ATOM 19 N4 C B 3 14.822 -1.425 75.725 1.00 22.59 N
ATOM 20 C5 C B 3 14.144 -0.500 77.831 1.00 23.21 C
ATOM 21 C6 C B 3 13.379 -0.656 78.922 1.00 23.80 C
ATOM 22 P A B 4 14.665 -3.163 83.740 1.00 30.46 P
ATOM 23 OP1 A B 4 14.865 -3.229 85.211 1.00 30.26 O
ATOM 24 OP2 A B 4 15.778 -2.719 82.868 1.00 30.48 O
ATOM 25 O5' A B 4 14.179 -4.593 83.244 1.00 28.38 O
TER
ATOM 2 P A A 6 8.061 -9.327 71.283 1.00 31.57 P
ATOM 3 OP1 A A 6 7.226 -9.706 70.113 1.00 32.66 O
ATOM 4 OP2 A A 6 8.496 -7.920 71.452 1.00 29.45 O
ATOM 5 O5' A A 6 7.302 -9.773 72.605 1.00 30.34 O
ATOM 6 C5' A A 6 6.522 -8.856 73.338 1.00 26.05 C
ATOM 7 C4' A A 6 6.052 -9.500 74.610 1.00 24.30 C
ATOM 8 O4' A A 6 7.187 -9.753 75.477 1.00 23.68 O
ATOM 9 C3' A A 6 5.143 -8.611 75.428 1.00 22.68 C
ATOM 10 O3' A A 6 3.828 -8.773 74.949 1.00 22.93 O
ATOM 11 C2' A A 6 5.341 -9.154 76.834 1.00 22.41 C
ATOM 12 O2' A A 6 4.642 -10.361 77.051 1.00 22.65 O
ATOM 13 C1' A A 6 6.843 -9.441 76.817 1.00 21.89 C
ATOM 14 N9 A A 6 7.644 -8.292 77.231 1.00 21.11 N
ATOM 15 C8 A A 6 8.622 -7.643 76.516 1.00 20.71 C
ATOM 16 N7 A A 6 9.188 -6.655 77.168 1.00 21.56 N
ATOM 17 C5 A A 6 8.533 -6.648 78.392 1.00 19.97 C
ATOM 18 C6 A A 6 8.668 -5.837 79.532 1.00 21.04 C
ATOM 19 N6 A A 6 9.558 -4.845 79.636 1.00 22.71 N
ATOM 20 N1 A A 6 7.850 -6.089 80.582 1.00 19.57 N
ATOM 21 C2 A A 6 6.969 -7.092 80.483 1.00 19.78 C
ATOM 22 N3 A A 6 6.754 -7.926 79.469 1.00 18.31 N
ATOM 23 C4 A A 6 7.576 -7.647 78.442 1.00 19.43 C
ATOM 24 P G A 7 2.959 -7.483 74.609 1.00 24.12 P
ATOM 25 OP1 G A 7 1.625 -7.977 74.181 1.00 23.19 O
ATOM 26 OP2 G A 7 3.734 -6.573 73.714 1.00 21.45 O
ATOM 27 O5' G A 7 2.825 -6.768 76.023 1.00 23.05 O
TER
ATOM 1 O3' U B 2 13.101 3.353 80.942 1.00 26.03 O
ATOM 2 P C B 3 14.344 2.469 81.446 1.00 25.90 P
ATOM 3 OP1 C B 3 14.720 2.971 82.790 1.00 24.81 O
ATOM 4 OP2 C B 3 15.355 2.427 80.365 1.00 24.89 O
ATOM 5 O5' C B 3 13.747 1.000 81.590 1.00 24.86 O
ATOM 6 C5' C B 3 12.660 0.734 82.467 1.00 24.76 C
ATOM 7 C4' C B 3 12.096 -0.636 82.187 1.00 24.29 C
ATOM 8 O4' C B 3 11.523 -0.661 80.853 1.00 22.81 O
ATOM 9 C3' C B 3 13.115 -1.763 82.167 1.00 24.43 C
ATOM 10 O3' C B 3 13.388 -2.225 83.481 1.00 27.37 O
ATOM 11 C2' C B 3 12.403 -2.811 81.326 1.00 23.87 C
ATOM 12 O2' C B 3 11.411 -3.507 82.051 1.00 22.31 O
ATOM 13 C1' C B 3 11.738 -1.932 80.265 1.00 22.23 C
ATOM 14 N1 C B 3 12.576 -1.754 79.067 1.00 21.92 N
ATOM 15 C2 C B 3 12.539 -2.733 78.078 1.00 21.39 C
ATOM 16 O2 C B 3 11.798 -3.710 78.236 1.00 21.74 O
ATOM 17 N3 C B 3 13.308 -2.594 76.976 1.00 22.00 N
ATOM 18 C4 C B 3 14.087 -1.522 76.837 1.00 22.19 C
ATOM 19 N4 C B 3 14.822 -1.425 75.725 1.00 22.59 N
ATOM 20 C5 C B 3 14.144 -0.500 77.831 1.00 23.21 C
ATOM 21 C6 C B 3 13.379 -0.656 78.922 1.00 23.80 C
ATOM 22 P A B 4 14.665 -3.163 83.740 1.00 30.46 P
ATOM 23 OP1 A B 4 14.865 -3.229 85.211 1.00 30.26 O
ATOM 24 OP2 A B 4 15.778 -2.719 82.868 1.00 30.48 O
ATOM 25 O5' A B 4 14.179 -4.593 83.244 1.00 28.38 O
TER
Atoms:
OP1: (7.226,-9.706,70.113)
OP2: (8.496,-7.920,71.452)
C3': (5.143,-8.611,75.428)
C1': (6.843,-9.441,76.817)
C5': (6.522,-8.856,73.338)
O4': (7.187,-9.753,75.477)
C8: (8.622,-7.643,76.516)
O2': (4.642,-10.361,77.051)
C6: (8.668,-5.837,79.532)
C5: (8.533,-6.648,78.392)
C4: (7.576,-7.647,78.442)
P: (8.061,-9.327,71.283)
C4': (6.052,-9.500,74.610)
C2': (5.341,-9.154,76.834)
C2: (6.969,-7.092,80.483)
N1: (7.850,-6.089,80.582)
N3: (6.754,-7.926,79.469)
N6: (9.558,-4.845,79.636)
N7: (9.188,-6.655,77.168)
N9: (7.644,-8.292,77.231)
O5': (7.302,-9.773,72.605)
O3': (3.828,-8.773,74.949)
OP2: (8.496,-7.920,71.452)
C3': (5.143,-8.611,75.428)
C1': (6.843,-9.441,76.817)
C5': (6.522,-8.856,73.338)
O4': (7.187,-9.753,75.477)
C8: (8.622,-7.643,76.516)
O2': (4.642,-10.361,77.051)
C6: (8.668,-5.837,79.532)
C5: (8.533,-6.648,78.392)
C4: (7.576,-7.647,78.442)
P: (8.061,-9.327,71.283)
C4': (6.052,-9.500,74.610)
C2': (5.341,-9.154,76.834)
C2: (6.969,-7.092,80.483)
N1: (7.850,-6.089,80.582)
N3: (6.754,-7.926,79.469)
N6: (9.558,-4.845,79.636)
N7: (9.188,-6.655,77.168)
N9: (7.644,-8.292,77.231)
O5': (7.302,-9.773,72.605)
O3': (3.828,-8.773,74.949)
C2: (12.539,-2.733,78.078)
OP1: (14.720,2.971,82.790)
OP2: (15.355,2.427,80.365)
C4: (14.087,-1.522,76.837)
O5': (13.747,1.000,81.590)
C3': (13.115,-1.763,82.167)
C1': (11.738,-1.932,80.265)
O4': (11.523,-0.661,80.853)
C5': (12.660,0.734,82.467)
P: (14.344,2.469,81.446)
O2: (11.798,-3.710,78.236)
C4': (12.096,-0.636,82.187)
C2': (12.403,-2.811,81.326)
O2': (11.411,-3.507,82.051)
N1: (12.576,-1.754,79.067)
N3: (13.308,-2.594,76.976)
N4: (14.822,-1.425,75.725)
C6: (13.379,-0.656,78.922)
C5: (14.144,-0.500,77.831)
O3': (13.388,-2.225,83.481)
OP1: (14.720,2.971,82.790)
OP2: (15.355,2.427,80.365)
C4: (14.087,-1.522,76.837)
O5': (13.747,1.000,81.590)
C3': (13.115,-1.763,82.167)
C1': (11.738,-1.932,80.265)
O4': (11.523,-0.661,80.853)
C5': (12.660,0.734,82.467)
P: (14.344,2.469,81.446)
O2: (11.798,-3.710,78.236)
C4': (12.096,-0.636,82.187)
C2': (12.403,-2.811,81.326)
O2': (11.411,-3.507,82.051)
N1: (12.576,-1.754,79.067)
N3: (13.308,-2.594,76.976)
N4: (14.822,-1.425,75.725)
C6: (13.379,-0.656,78.922)
C5: (14.144,-0.500,77.831)
O3': (13.388,-2.225,83.481)
Image (generated by PyMOL):