Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1Y99:B8:A15
Extra
PDB:
ATOM 1 O3' A A 7 6.204 2.067 11.423 1.00 44.80 O
ATOM 2 P G A 8 4.962 2.582 12.297 1.00 45.86 P
ATOM 3 OP1 G A 8 5.429 2.795 13.694 1.00 48.55 O
ATOM 4 OP2 G A 8 3.838 1.653 12.034 1.00 44.43 O
ATOM 5 O5' G A 8 4.608 4.002 11.665 1.00 45.69 O
ATOM 6 C5' G A 8 5.607 5.031 11.556 1.00 41.37 C
ATOM 7 C4' G A 8 4.943 6.379 11.498 1.00 42.44 C
ATOM 8 O4' G A 8 4.138 6.463 10.294 1.00 41.31 O
ATOM 9 C3' G A 8 3.947 6.635 12.612 1.00 43.52 C
ATOM 10 O3' G A 8 4.575 7.061 13.809 1.00 44.72 O
ATOM 11 C2' G A 8 3.057 7.704 12.003 1.00 43.04 C
ATOM 12 O2' G A 8 3.645 8.988 12.034 1.00 45.49 O
ATOM 13 C1' G A 8 2.961 7.210 10.559 1.00 40.26 C
ATOM 14 N9 G A 8 1.814 6.328 10.388 1.00 39.19 N
ATOM 15 C8 G A 8 1.818 4.964 10.210 1.00 37.73 C
ATOM 16 N7 G A 8 0.617 4.456 10.137 1.00 36.49 N
ATOM 17 C5 G A 8 -0.226 5.553 10.261 1.00 36.52 C
ATOM 18 C6 G A 8 -1.642 5.632 10.259 1.00 38.14 C
ATOM 19 O6 G A 8 -2.470 4.716 10.137 1.00 38.85 O
ATOM 20 N1 G A 8 -2.079 6.944 10.419 1.00 39.78 N
ATOM 21 C2 G A 8 -1.262 8.040 10.553 1.00 39.95 C
ATOM 22 N2 G A 8 -1.871 9.225 10.693 1.00 38.76 N
ATOM 23 N3 G A 8 0.055 7.979 10.550 1.00 39.52 N
ATOM 24 C4 G A 8 0.501 6.714 10.405 1.00 37.71 C
ATOM 25 P G A 9 3.941 6.649 15.225 1.00 45.48 P
ATOM 26 OP1 G A 9 4.926 7.009 16.281 1.00 48.63 O
ATOM 27 OP2 G A 9 3.459 5.246 15.115 1.00 44.53 O
ATOM 28 O5' G A 9 2.669 7.594 15.365 1.00 43.58 O
TER
ATOM 1 O3' C B 14 -13.341 6.944 14.259 1.00 46.52 O
ATOM 2 P A B 15 -13.349 7.577 12.773 1.00 49.16 P
ATOM 3 OP1 A B 15 -14.682 8.216 12.593 1.00 48.85 O
ATOM 4 OP2 A B 15 -12.893 6.544 11.803 1.00 45.70 O
ATOM 5 O5' A B 15 -12.220 8.707 12.818 1.00 43.99 O
ATOM 6 C5' A B 15 -12.206 9.685 13.872 1.00 40.77 C
ATOM 7 C4' A B 15 -10.825 10.275 14.026 1.00 38.68 C
ATOM 8 O4' A B 15 -9.888 9.237 14.408 1.00 36.81 O
ATOM 9 C3' A B 15 -10.212 10.860 12.770 1.00 38.95 C
ATOM 10 O3' A B 15 -10.708 12.166 12.524 1.00 45.65 O
ATOM 11 C2' A B 15 -8.728 10.853 13.113 1.00 38.10 C
ATOM 12 O2' A B 15 -8.355 11.905 13.983 1.00 37.66 O
ATOM 13 C1' A B 15 -8.608 9.530 13.868 1.00 33.81 C
ATOM 14 N9 A B 15 -8.198 8.415 13.015 1.00 29.46 N
ATOM 15 C8 A B 15 -8.974 7.402 12.510 1.00 27.93 C
ATOM 16 N7 A B 15 -8.306 6.534 11.789 1.00 28.06 N
ATOM 17 C5 A B 15 -7.004 7.011 11.817 1.00 25.88 C
ATOM 18 C6 A B 15 -5.810 6.535 11.248 1.00 27.98 C
ATOM 19 N6 A B 15 -5.729 5.421 10.513 1.00 28.11 N
ATOM 20 N1 A B 15 -4.685 7.247 11.467 1.00 26.48 N
ATOM 21 C2 A B 15 -4.763 8.355 12.215 1.00 26.33 C
ATOM 22 N3 A B 15 -5.823 8.900 12.808 1.00 27.52 N
ATOM 23 C4 A B 15 -6.925 8.171 12.565 1.00 27.67 C
ATOM 24 P C B 16 -10.909 12.669 11.011 1.00 45.67 P
ATOM 25 OP1 C B 16 -11.652 13.951 11.083 1.00 47.93 O
ATOM 26 OP2 C B 16 -11.456 11.548 10.204 1.00 46.87 O
ATOM 27 O5' C B 16 -9.425 12.952 10.506 1.00 44.87 O
TER
ATOM 2 P G A 8 4.962 2.582 12.297 1.00 45.86 P
ATOM 3 OP1 G A 8 5.429 2.795 13.694 1.00 48.55 O
ATOM 4 OP2 G A 8 3.838 1.653 12.034 1.00 44.43 O
ATOM 5 O5' G A 8 4.608 4.002 11.665 1.00 45.69 O
ATOM 6 C5' G A 8 5.607 5.031 11.556 1.00 41.37 C
ATOM 7 C4' G A 8 4.943 6.379 11.498 1.00 42.44 C
ATOM 8 O4' G A 8 4.138 6.463 10.294 1.00 41.31 O
ATOM 9 C3' G A 8 3.947 6.635 12.612 1.00 43.52 C
ATOM 10 O3' G A 8 4.575 7.061 13.809 1.00 44.72 O
ATOM 11 C2' G A 8 3.057 7.704 12.003 1.00 43.04 C
ATOM 12 O2' G A 8 3.645 8.988 12.034 1.00 45.49 O
ATOM 13 C1' G A 8 2.961 7.210 10.559 1.00 40.26 C
ATOM 14 N9 G A 8 1.814 6.328 10.388 1.00 39.19 N
ATOM 15 C8 G A 8 1.818 4.964 10.210 1.00 37.73 C
ATOM 16 N7 G A 8 0.617 4.456 10.137 1.00 36.49 N
ATOM 17 C5 G A 8 -0.226 5.553 10.261 1.00 36.52 C
ATOM 18 C6 G A 8 -1.642 5.632 10.259 1.00 38.14 C
ATOM 19 O6 G A 8 -2.470 4.716 10.137 1.00 38.85 O
ATOM 20 N1 G A 8 -2.079 6.944 10.419 1.00 39.78 N
ATOM 21 C2 G A 8 -1.262 8.040 10.553 1.00 39.95 C
ATOM 22 N2 G A 8 -1.871 9.225 10.693 1.00 38.76 N
ATOM 23 N3 G A 8 0.055 7.979 10.550 1.00 39.52 N
ATOM 24 C4 G A 8 0.501 6.714 10.405 1.00 37.71 C
ATOM 25 P G A 9 3.941 6.649 15.225 1.00 45.48 P
ATOM 26 OP1 G A 9 4.926 7.009 16.281 1.00 48.63 O
ATOM 27 OP2 G A 9 3.459 5.246 15.115 1.00 44.53 O
ATOM 28 O5' G A 9 2.669 7.594 15.365 1.00 43.58 O
TER
ATOM 1 O3' C B 14 -13.341 6.944 14.259 1.00 46.52 O
ATOM 2 P A B 15 -13.349 7.577 12.773 1.00 49.16 P
ATOM 3 OP1 A B 15 -14.682 8.216 12.593 1.00 48.85 O
ATOM 4 OP2 A B 15 -12.893 6.544 11.803 1.00 45.70 O
ATOM 5 O5' A B 15 -12.220 8.707 12.818 1.00 43.99 O
ATOM 6 C5' A B 15 -12.206 9.685 13.872 1.00 40.77 C
ATOM 7 C4' A B 15 -10.825 10.275 14.026 1.00 38.68 C
ATOM 8 O4' A B 15 -9.888 9.237 14.408 1.00 36.81 O
ATOM 9 C3' A B 15 -10.212 10.860 12.770 1.00 38.95 C
ATOM 10 O3' A B 15 -10.708 12.166 12.524 1.00 45.65 O
ATOM 11 C2' A B 15 -8.728 10.853 13.113 1.00 38.10 C
ATOM 12 O2' A B 15 -8.355 11.905 13.983 1.00 37.66 O
ATOM 13 C1' A B 15 -8.608 9.530 13.868 1.00 33.81 C
ATOM 14 N9 A B 15 -8.198 8.415 13.015 1.00 29.46 N
ATOM 15 C8 A B 15 -8.974 7.402 12.510 1.00 27.93 C
ATOM 16 N7 A B 15 -8.306 6.534 11.789 1.00 28.06 N
ATOM 17 C5 A B 15 -7.004 7.011 11.817 1.00 25.88 C
ATOM 18 C6 A B 15 -5.810 6.535 11.248 1.00 27.98 C
ATOM 19 N6 A B 15 -5.729 5.421 10.513 1.00 28.11 N
ATOM 20 N1 A B 15 -4.685 7.247 11.467 1.00 26.48 N
ATOM 21 C2 A B 15 -4.763 8.355 12.215 1.00 26.33 C
ATOM 22 N3 A B 15 -5.823 8.900 12.808 1.00 27.52 N
ATOM 23 C4 A B 15 -6.925 8.171 12.565 1.00 27.67 C
ATOM 24 P C B 16 -10.909 12.669 11.011 1.00 45.67 P
ATOM 25 OP1 C B 16 -11.652 13.951 11.083 1.00 47.93 O
ATOM 26 OP2 C B 16 -11.456 11.548 10.204 1.00 46.87 O
ATOM 27 O5' C B 16 -9.425 12.952 10.506 1.00 44.87 O
TER
Atoms:
OP1: (5.429,2.795,13.694)
OP2: (3.838,1.653,12.034)
C3': (3.947,6.635,12.612)
C1': (2.961,7.210,10.559)
C5': (5.607,5.031,11.556)
O6: (-2.470,4.716,10.137)
O4': (4.138,6.463,10.294)
C8: (1.818,4.964,10.210)
C2: (-1.262,8.040,10.553)
C6: (-1.642,5.632,10.259)
C5: (-0.226,5.553,10.261)
C4: (0.501,6.714,10.405)
P: (4.962,2.582,12.297)
C4': (4.943,6.379,11.498)
C2': (3.057,7.704,12.003)
O2': (3.645,8.988,12.034)
N1: (-2.079,6.944,10.419)
N2: (-1.871,9.225,10.693)
N3: (0.055,7.979,10.550)
N7: (0.617,4.456,10.137)
N9: (1.814,6.328,10.388)
O5': (4.608,4.002,11.665)
O3': (4.575,7.061,13.809)
OP2: (3.838,1.653,12.034)
C3': (3.947,6.635,12.612)
C1': (2.961,7.210,10.559)
C5': (5.607,5.031,11.556)
O6: (-2.470,4.716,10.137)
O4': (4.138,6.463,10.294)
C8: (1.818,4.964,10.210)
C2: (-1.262,8.040,10.553)
C6: (-1.642,5.632,10.259)
C5: (-0.226,5.553,10.261)
C4: (0.501,6.714,10.405)
P: (4.962,2.582,12.297)
C4': (4.943,6.379,11.498)
C2': (3.057,7.704,12.003)
O2': (3.645,8.988,12.034)
N1: (-2.079,6.944,10.419)
N2: (-1.871,9.225,10.693)
N3: (0.055,7.979,10.550)
N7: (0.617,4.456,10.137)
N9: (1.814,6.328,10.388)
O5': (4.608,4.002,11.665)
O3': (4.575,7.061,13.809)
OP1: (-14.682,8.216,12.593)
OP2: (-12.893,6.544,11.803)
C3': (-10.212,10.860,12.770)
C1': (-8.608,9.530,13.868)
C5': (-12.206,9.685,13.872)
O4': (-9.888,9.237,14.408)
C8: (-8.974,7.402,12.510)
O2': (-8.355,11.905,13.983)
C6: (-5.810,6.535,11.248)
C5: (-7.004,7.011,11.817)
C4: (-6.925,8.171,12.565)
P: (-13.349,7.577,12.773)
C4': (-10.825,10.275,14.026)
C2': (-8.728,10.853,13.113)
C2: (-4.763,8.355,12.215)
N1: (-4.685,7.247,11.467)
N3: (-5.823,8.900,12.808)
N6: (-5.729,5.421,10.513)
N7: (-8.306,6.534,11.789)
N9: (-8.198,8.415,13.015)
O5': (-12.220,8.707,12.818)
O3': (-10.708,12.166,12.524)
OP2: (-12.893,6.544,11.803)
C3': (-10.212,10.860,12.770)
C1': (-8.608,9.530,13.868)
C5': (-12.206,9.685,13.872)
O4': (-9.888,9.237,14.408)
C8: (-8.974,7.402,12.510)
O2': (-8.355,11.905,13.983)
C6: (-5.810,6.535,11.248)
C5: (-7.004,7.011,11.817)
C4: (-6.925,8.171,12.565)
P: (-13.349,7.577,12.773)
C4': (-10.825,10.275,14.026)
C2': (-8.728,10.853,13.113)
C2: (-4.763,8.355,12.215)
N1: (-4.685,7.247,11.467)
N3: (-5.823,8.900,12.808)
N6: (-5.729,5.421,10.513)
N7: (-8.306,6.534,11.789)
N9: (-8.198,8.415,13.015)
O5': (-12.220,8.707,12.818)
O3': (-10.708,12.166,12.524)
Image (generated by PyMOL):