Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3SD3:A25:A51
Extra
PDB:
ATOM 1 O3' C A 24 9.674 -2.419 22.208 1.00 29.40 O
ATOM 2 P G A 25 10.281 -3.129 23.519 1.00 30.50 P
ATOM 3 OP1 G A 25 10.686 -4.501 23.124 1.00 33.55 O
ATOM 4 OP2 G A 25 9.285 -2.964 24.605 1.00 33.40 O
ATOM 5 O5' G A 25 11.571 -2.253 23.831 1.00 29.86 O
ATOM 6 C5' G A 25 12.661 -2.217 22.924 1.00 31.28 C
ATOM 7 C4' G A 25 13.631 -1.116 23.269 1.00 32.20 C
ATOM 8 O4' G A 25 13.005 0.180 23.064 1.00 33.16 O
ATOM 9 C3' G A 25 14.094 -1.061 24.714 1.00 32.21 C
ATOM 10 O3' G A 25 15.097 -2.011 25.018 1.00 30.60 O
ATOM 11 C2' G A 25 14.553 0.380 24.845 1.00 34.10 C
ATOM 12 O2' G A 25 15.798 0.574 24.194 1.00 37.86 O
ATOM 13 C1' G A 25 13.471 1.093 24.040 1.00 33.49 C
ATOM 14 N9 G A 25 12.341 1.474 24.900 1.00 33.65 N
ATOM 15 C8 G A 25 11.160 0.798 25.088 1.00 34.91 C
ATOM 16 N7 G A 25 10.373 1.394 25.943 1.00 34.46 N
ATOM 17 C5 G A 25 11.086 2.514 26.350 1.00 33.54 C
ATOM 18 C6 G A 25 10.744 3.541 27.268 1.00 35.95 C
ATOM 19 O6 G A 25 9.705 3.666 27.929 1.00 35.89 O
ATOM 20 N1 G A 25 11.762 4.485 27.380 1.00 37.23 N
ATOM 21 C2 G A 25 12.954 4.444 26.697 1.00 37.24 C
ATOM 22 N2 G A 25 13.809 5.448 26.941 1.00 38.61 N
ATOM 23 N3 G A 25 13.286 3.494 25.836 1.00 31.10 N
ATOM 24 C4 G A 25 12.307 2.573 25.717 1.00 32.78 C
ATOM 25 P U A 26 15.257 -2.557 26.519 1.00 31.15 P
ATOM 26 OP1 U A 26 16.409 -3.488 26.518 1.00 31.02 O
ATOM 27 OP2 U A 26 13.930 -3.065 26.949 1.00 29.40 O
ATOM 28 O5' U A 26 15.622 -1.243 27.338 1.00 34.15 O
TER
ATOM 1 O3' A B 50 10.263 9.493 38.690 1.00 48.34 O
ATOM 2 P A B 51 10.323 10.681 37.615 1.00 56.33 P
ATOM 3 OP1 A B 51 10.323 11.961 38.373 1.00 57.56 O
ATOM 4 OP2 A B 51 9.245 10.438 36.621 1.00 51.01 O
ATOM 5 O5' A B 51 11.738 10.450 36.943 1.00 48.49 O
ATOM 6 C5' A B 51 12.049 11.040 35.704 1.00 52.66 C
ATOM 7 C4' A B 51 13.299 10.453 35.121 1.00 54.00 C
ATOM 8 O4' A B 51 13.216 9.002 35.132 1.00 55.70 O
ATOM 9 C3' A B 51 13.555 10.801 33.671 1.00 53.74 C
ATOM 10 O3' A B 51 14.153 12.070 33.515 1.00 55.04 O
ATOM 11 C2' A B 51 14.410 9.643 33.191 1.00 52.94 C
ATOM 12 O2' A B 51 15.746 9.784 33.649 1.00 53.11 O
ATOM 13 C1' A B 51 13.760 8.481 33.939 1.00 54.32 C
ATOM 14 N9 A B 51 12.661 7.876 33.165 1.00 53.01 N
ATOM 15 C8 A B 51 11.314 7.974 33.421 1.00 51.31 C
ATOM 16 N7 A B 51 10.560 7.329 32.565 1.00 50.14 N
ATOM 17 C5 A B 51 11.476 6.765 31.686 1.00 50.98 C
ATOM 18 C6 A B 51 11.318 5.957 30.548 1.00 49.09 C
ATOM 19 N6 A B 51 10.132 5.560 30.084 1.00 47.37 N
ATOM 20 N1 A B 51 12.435 5.568 29.896 1.00 49.60 N
ATOM 21 C2 A B 51 13.627 5.966 30.360 1.00 52.19 C
ATOM 22 N3 A B 51 13.905 6.725 31.419 1.00 53.11 N
ATOM 23 C4 A B 51 12.773 7.092 32.045 1.00 52.76 C
ATOM 24 P C B 52 13.415 13.186 32.641 1.00 52.22 P
ATOM 25 OP1 C B 52 14.010 14.496 33.008 1.00 54.31 O
ATOM 26 OP2 C B 52 11.956 12.989 32.822 1.00 52.35 O
ATOM 27 O5' C B 52 13.836 12.788 31.158 1.00 58.73 O
TER
ATOM 2 P G A 25 10.281 -3.129 23.519 1.00 30.50 P
ATOM 3 OP1 G A 25 10.686 -4.501 23.124 1.00 33.55 O
ATOM 4 OP2 G A 25 9.285 -2.964 24.605 1.00 33.40 O
ATOM 5 O5' G A 25 11.571 -2.253 23.831 1.00 29.86 O
ATOM 6 C5' G A 25 12.661 -2.217 22.924 1.00 31.28 C
ATOM 7 C4' G A 25 13.631 -1.116 23.269 1.00 32.20 C
ATOM 8 O4' G A 25 13.005 0.180 23.064 1.00 33.16 O
ATOM 9 C3' G A 25 14.094 -1.061 24.714 1.00 32.21 C
ATOM 10 O3' G A 25 15.097 -2.011 25.018 1.00 30.60 O
ATOM 11 C2' G A 25 14.553 0.380 24.845 1.00 34.10 C
ATOM 12 O2' G A 25 15.798 0.574 24.194 1.00 37.86 O
ATOM 13 C1' G A 25 13.471 1.093 24.040 1.00 33.49 C
ATOM 14 N9 G A 25 12.341 1.474 24.900 1.00 33.65 N
ATOM 15 C8 G A 25 11.160 0.798 25.088 1.00 34.91 C
ATOM 16 N7 G A 25 10.373 1.394 25.943 1.00 34.46 N
ATOM 17 C5 G A 25 11.086 2.514 26.350 1.00 33.54 C
ATOM 18 C6 G A 25 10.744 3.541 27.268 1.00 35.95 C
ATOM 19 O6 G A 25 9.705 3.666 27.929 1.00 35.89 O
ATOM 20 N1 G A 25 11.762 4.485 27.380 1.00 37.23 N
ATOM 21 C2 G A 25 12.954 4.444 26.697 1.00 37.24 C
ATOM 22 N2 G A 25 13.809 5.448 26.941 1.00 38.61 N
ATOM 23 N3 G A 25 13.286 3.494 25.836 1.00 31.10 N
ATOM 24 C4 G A 25 12.307 2.573 25.717 1.00 32.78 C
ATOM 25 P U A 26 15.257 -2.557 26.519 1.00 31.15 P
ATOM 26 OP1 U A 26 16.409 -3.488 26.518 1.00 31.02 O
ATOM 27 OP2 U A 26 13.930 -3.065 26.949 1.00 29.40 O
ATOM 28 O5' U A 26 15.622 -1.243 27.338 1.00 34.15 O
TER
ATOM 1 O3' A B 50 10.263 9.493 38.690 1.00 48.34 O
ATOM 2 P A B 51 10.323 10.681 37.615 1.00 56.33 P
ATOM 3 OP1 A B 51 10.323 11.961 38.373 1.00 57.56 O
ATOM 4 OP2 A B 51 9.245 10.438 36.621 1.00 51.01 O
ATOM 5 O5' A B 51 11.738 10.450 36.943 1.00 48.49 O
ATOM 6 C5' A B 51 12.049 11.040 35.704 1.00 52.66 C
ATOM 7 C4' A B 51 13.299 10.453 35.121 1.00 54.00 C
ATOM 8 O4' A B 51 13.216 9.002 35.132 1.00 55.70 O
ATOM 9 C3' A B 51 13.555 10.801 33.671 1.00 53.74 C
ATOM 10 O3' A B 51 14.153 12.070 33.515 1.00 55.04 O
ATOM 11 C2' A B 51 14.410 9.643 33.191 1.00 52.94 C
ATOM 12 O2' A B 51 15.746 9.784 33.649 1.00 53.11 O
ATOM 13 C1' A B 51 13.760 8.481 33.939 1.00 54.32 C
ATOM 14 N9 A B 51 12.661 7.876 33.165 1.00 53.01 N
ATOM 15 C8 A B 51 11.314 7.974 33.421 1.00 51.31 C
ATOM 16 N7 A B 51 10.560 7.329 32.565 1.00 50.14 N
ATOM 17 C5 A B 51 11.476 6.765 31.686 1.00 50.98 C
ATOM 18 C6 A B 51 11.318 5.957 30.548 1.00 49.09 C
ATOM 19 N6 A B 51 10.132 5.560 30.084 1.00 47.37 N
ATOM 20 N1 A B 51 12.435 5.568 29.896 1.00 49.60 N
ATOM 21 C2 A B 51 13.627 5.966 30.360 1.00 52.19 C
ATOM 22 N3 A B 51 13.905 6.725 31.419 1.00 53.11 N
ATOM 23 C4 A B 51 12.773 7.092 32.045 1.00 52.76 C
ATOM 24 P C B 52 13.415 13.186 32.641 1.00 52.22 P
ATOM 25 OP1 C B 52 14.010 14.496 33.008 1.00 54.31 O
ATOM 26 OP2 C B 52 11.956 12.989 32.822 1.00 52.35 O
ATOM 27 O5' C B 52 13.836 12.788 31.158 1.00 58.73 O
TER
Atoms:
OP1: (10.686,-4.501,23.124)
OP2: (9.285,-2.964,24.605)
C3': (14.094,-1.061,24.714)
C1': (13.471,1.093,24.040)
C5': (12.661,-2.217,22.924)
O6: (9.705,3.666,27.929)
O4': (13.005,0.180,23.064)
C8: (11.160,0.798,25.088)
C2: (12.954,4.444,26.697)
C6: (10.744,3.541,27.268)
C5: (11.086,2.514,26.350)
C4: (12.307,2.573,25.717)
P: (10.281,-3.129,23.519)
C4': (13.631,-1.116,23.269)
C2': (14.553,0.380,24.845)
O2': (15.798,0.574,24.194)
N1: (11.762,4.485,27.380)
N2: (13.809,5.448,26.941)
N3: (13.286,3.494,25.836)
N7: (10.373,1.394,25.943)
N9: (12.341,1.474,24.900)
O5': (11.571,-2.253,23.831)
O3': (15.097,-2.011,25.018)
OP2: (9.285,-2.964,24.605)
C3': (14.094,-1.061,24.714)
C1': (13.471,1.093,24.040)
C5': (12.661,-2.217,22.924)
O6: (9.705,3.666,27.929)
O4': (13.005,0.180,23.064)
C8: (11.160,0.798,25.088)
C2: (12.954,4.444,26.697)
C6: (10.744,3.541,27.268)
C5: (11.086,2.514,26.350)
C4: (12.307,2.573,25.717)
P: (10.281,-3.129,23.519)
C4': (13.631,-1.116,23.269)
C2': (14.553,0.380,24.845)
O2': (15.798,0.574,24.194)
N1: (11.762,4.485,27.380)
N2: (13.809,5.448,26.941)
N3: (13.286,3.494,25.836)
N7: (10.373,1.394,25.943)
N9: (12.341,1.474,24.900)
O5': (11.571,-2.253,23.831)
O3': (15.097,-2.011,25.018)
OP1: (10.323,11.961,38.373)
OP2: (9.245,10.438,36.621)
C3': (13.555,10.801,33.671)
C1': (13.760,8.481,33.939)
C5': (12.049,11.040,35.704)
O4': (13.216,9.002,35.132)
C8: (11.314,7.974,33.421)
O2': (15.746,9.784,33.649)
C6: (11.318,5.957,30.548)
C5: (11.476,6.765,31.686)
C4: (12.773,7.092,32.045)
P: (10.323,10.681,37.615)
C4': (13.299,10.453,35.121)
C2': (14.410,9.643,33.191)
C2: (13.627,5.966,30.360)
N1: (12.435,5.568,29.896)
N3: (13.905,6.725,31.419)
N6: (10.132,5.560,30.084)
N7: (10.560,7.329,32.565)
N9: (12.661,7.876,33.165)
O5': (11.738,10.450,36.943)
O3': (14.153,12.070,33.515)
OP2: (9.245,10.438,36.621)
C3': (13.555,10.801,33.671)
C1': (13.760,8.481,33.939)
C5': (12.049,11.040,35.704)
O4': (13.216,9.002,35.132)
C8: (11.314,7.974,33.421)
O2': (15.746,9.784,33.649)
C6: (11.318,5.957,30.548)
C5: (11.476,6.765,31.686)
C4: (12.773,7.092,32.045)
P: (10.323,10.681,37.615)
C4': (13.299,10.453,35.121)
C2': (14.410,9.643,33.191)
C2: (13.627,5.966,30.360)
N1: (12.435,5.568,29.896)
N3: (13.905,6.725,31.419)
N6: (10.132,5.560,30.084)
N7: (10.560,7.329,32.565)
N9: (12.661,7.876,33.165)
O5': (11.738,10.450,36.943)
O3': (14.153,12.070,33.515)
Image (generated by PyMOL):