Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2GDI:X9:X37
Extra
PDB:
ATOM 1 O3' G A 8 -21.763 -2.592 -1.239 1.00 34.88 O
ATOM 2 P G A 9 -21.152 -2.109 0.155 1.00 35.04 P
ATOM 3 OP1 G A 9 -22.240 -2.167 1.149 1.00 34.57 O
ATOM 4 OP2 G A 9 -20.402 -0.852 -0.061 1.00 35.48 O
ATOM 5 O5' G A 9 -20.078 -3.247 0.480 1.00 33.44 O
ATOM 6 C5' G A 9 -20.484 -4.593 0.699 1.00 33.07 C
ATOM 7 C4' G A 9 -19.267 -5.499 0.698 1.00 32.33 C
ATOM 8 O4' G A 9 -18.648 -5.461 -0.610 1.00 31.80 O
ATOM 9 C3' G A 9 -18.159 -5.095 1.658 1.00 31.86 C
ATOM 10 O3' G A 9 -18.409 -5.648 2.944 1.00 31.78 O
ATOM 11 C2' G A 9 -16.936 -5.716 0.992 1.00 31.74 C
ATOM 12 O2' G A 9 -16.856 -7.109 1.231 1.00 32.06 O
ATOM 13 C1' G A 9 -17.238 -5.478 -0.484 1.00 31.54 C
ATOM 14 N9 G A 9 -16.737 -4.229 -1.059 1.00 30.37 N
ATOM 15 C8 G A 9 -17.283 -2.976 -0.913 1.00 30.07 C
ATOM 16 N7 G A 9 -16.642 -2.050 -1.570 1.00 30.50 N
ATOM 17 C5 G A 9 -15.610 -2.737 -2.198 1.00 30.03 C
ATOM 18 C6 G A 9 -14.584 -2.261 -3.048 1.00 29.79 C
ATOM 19 O6 G A 9 -14.381 -1.101 -3.428 1.00 28.24 O
ATOM 20 N1 G A 9 -13.745 -3.289 -3.474 1.00 29.32 N
ATOM 21 C2 G A 9 -13.869 -4.611 -3.118 1.00 29.29 C
ATOM 22 N2 G A 9 -12.960 -5.460 -3.638 1.00 27.53 N
ATOM 23 N3 G A 9 -14.825 -5.068 -2.319 1.00 29.24 N
ATOM 24 C4 G A 9 -15.659 -4.080 -1.901 1.00 30.11 C
ATOM 25 P U A 10 -18.045 -4.834 4.275 1.00 32.61 P
ATOM 26 OP1 U A 10 -18.561 -5.613 5.423 1.00 31.72 O
ATOM 27 OP2 U A 10 -18.420 -3.414 4.101 1.00 32.52 O
ATOM 28 O5' U A 10 -16.454 -4.897 4.286 1.00 32.18 O
TER
ATOM 1 O3' U B 36 -6.236 3.489 -10.327 1.00 46.10 O
ATOM 2 P A B 37 -7.087 2.198 -10.758 1.00 44.15 P
ATOM 3 OP1 A B 37 -6.976 2.095 -12.231 1.00 44.01 O
ATOM 4 OP2 A B 37 -8.425 2.289 -10.132 1.00 44.27 O
ATOM 5 O5' A B 37 -6.318 0.952 -10.105 1.00 42.29 O
ATOM 6 C5' A B 37 -6.095 -0.229 -10.876 1.00 38.54 C
ATOM 7 C4' A B 37 -6.150 -1.488 -10.026 1.00 35.68 C
ATOM 8 O4' A B 37 -6.307 -1.146 -8.627 1.00 34.46 O
ATOM 9 C3' A B 37 -7.312 -2.424 -10.326 1.00 34.43 C
ATOM 10 O3' A B 37 -6.999 -3.283 -11.414 1.00 34.43 O
ATOM 11 C2' A B 37 -7.409 -3.203 -9.020 1.00 34.35 C
ATOM 12 O2' A B 37 -6.448 -4.236 -8.941 1.00 34.37 O
ATOM 13 C1' A B 37 -7.115 -2.121 -7.986 1.00 33.49 C
ATOM 14 N9 A B 37 -8.320 -1.469 -7.482 1.00 32.73 N
ATOM 15 C8 A B 37 -8.757 -0.208 -7.779 1.00 33.14 C
ATOM 16 N7 A B 37 -9.877 0.119 -7.181 1.00 32.27 N
ATOM 17 C5 A B 37 -10.200 -1.006 -6.442 1.00 32.44 C
ATOM 18 C6 A B 37 -11.278 -1.299 -5.584 1.00 31.56 C
ATOM 19 N6 A B 37 -12.267 -0.436 -5.326 1.00 31.53 N
ATOM 20 N1 A B 37 -11.302 -2.517 -5.002 1.00 32.63 N
ATOM 21 C2 A B 37 -10.305 -3.372 -5.261 1.00 32.15 C
ATOM 22 N3 A B 37 -9.240 -3.211 -6.048 1.00 31.88 N
ATOM 23 C4 A B 37 -9.247 -1.994 -6.613 1.00 32.51 C
ATOM 24 P C B 38 -8.147 -3.759 -12.422 1.00 34.64 P
ATOM 25 OP1 C B 38 -7.506 -4.509 -13.525 1.00 34.45 O
ATOM 26 OP2 C B 38 -9.001 -2.587 -12.716 1.00 34.77 O
ATOM 27 O5' C B 38 -9.017 -4.776 -11.540 1.00 34.15 O
TER
ATOM 2 P G A 9 -21.152 -2.109 0.155 1.00 35.04 P
ATOM 3 OP1 G A 9 -22.240 -2.167 1.149 1.00 34.57 O
ATOM 4 OP2 G A 9 -20.402 -0.852 -0.061 1.00 35.48 O
ATOM 5 O5' G A 9 -20.078 -3.247 0.480 1.00 33.44 O
ATOM 6 C5' G A 9 -20.484 -4.593 0.699 1.00 33.07 C
ATOM 7 C4' G A 9 -19.267 -5.499 0.698 1.00 32.33 C
ATOM 8 O4' G A 9 -18.648 -5.461 -0.610 1.00 31.80 O
ATOM 9 C3' G A 9 -18.159 -5.095 1.658 1.00 31.86 C
ATOM 10 O3' G A 9 -18.409 -5.648 2.944 1.00 31.78 O
ATOM 11 C2' G A 9 -16.936 -5.716 0.992 1.00 31.74 C
ATOM 12 O2' G A 9 -16.856 -7.109 1.231 1.00 32.06 O
ATOM 13 C1' G A 9 -17.238 -5.478 -0.484 1.00 31.54 C
ATOM 14 N9 G A 9 -16.737 -4.229 -1.059 1.00 30.37 N
ATOM 15 C8 G A 9 -17.283 -2.976 -0.913 1.00 30.07 C
ATOM 16 N7 G A 9 -16.642 -2.050 -1.570 1.00 30.50 N
ATOM 17 C5 G A 9 -15.610 -2.737 -2.198 1.00 30.03 C
ATOM 18 C6 G A 9 -14.584 -2.261 -3.048 1.00 29.79 C
ATOM 19 O6 G A 9 -14.381 -1.101 -3.428 1.00 28.24 O
ATOM 20 N1 G A 9 -13.745 -3.289 -3.474 1.00 29.32 N
ATOM 21 C2 G A 9 -13.869 -4.611 -3.118 1.00 29.29 C
ATOM 22 N2 G A 9 -12.960 -5.460 -3.638 1.00 27.53 N
ATOM 23 N3 G A 9 -14.825 -5.068 -2.319 1.00 29.24 N
ATOM 24 C4 G A 9 -15.659 -4.080 -1.901 1.00 30.11 C
ATOM 25 P U A 10 -18.045 -4.834 4.275 1.00 32.61 P
ATOM 26 OP1 U A 10 -18.561 -5.613 5.423 1.00 31.72 O
ATOM 27 OP2 U A 10 -18.420 -3.414 4.101 1.00 32.52 O
ATOM 28 O5' U A 10 -16.454 -4.897 4.286 1.00 32.18 O
TER
ATOM 1 O3' U B 36 -6.236 3.489 -10.327 1.00 46.10 O
ATOM 2 P A B 37 -7.087 2.198 -10.758 1.00 44.15 P
ATOM 3 OP1 A B 37 -6.976 2.095 -12.231 1.00 44.01 O
ATOM 4 OP2 A B 37 -8.425 2.289 -10.132 1.00 44.27 O
ATOM 5 O5' A B 37 -6.318 0.952 -10.105 1.00 42.29 O
ATOM 6 C5' A B 37 -6.095 -0.229 -10.876 1.00 38.54 C
ATOM 7 C4' A B 37 -6.150 -1.488 -10.026 1.00 35.68 C
ATOM 8 O4' A B 37 -6.307 -1.146 -8.627 1.00 34.46 O
ATOM 9 C3' A B 37 -7.312 -2.424 -10.326 1.00 34.43 C
ATOM 10 O3' A B 37 -6.999 -3.283 -11.414 1.00 34.43 O
ATOM 11 C2' A B 37 -7.409 -3.203 -9.020 1.00 34.35 C
ATOM 12 O2' A B 37 -6.448 -4.236 -8.941 1.00 34.37 O
ATOM 13 C1' A B 37 -7.115 -2.121 -7.986 1.00 33.49 C
ATOM 14 N9 A B 37 -8.320 -1.469 -7.482 1.00 32.73 N
ATOM 15 C8 A B 37 -8.757 -0.208 -7.779 1.00 33.14 C
ATOM 16 N7 A B 37 -9.877 0.119 -7.181 1.00 32.27 N
ATOM 17 C5 A B 37 -10.200 -1.006 -6.442 1.00 32.44 C
ATOM 18 C6 A B 37 -11.278 -1.299 -5.584 1.00 31.56 C
ATOM 19 N6 A B 37 -12.267 -0.436 -5.326 1.00 31.53 N
ATOM 20 N1 A B 37 -11.302 -2.517 -5.002 1.00 32.63 N
ATOM 21 C2 A B 37 -10.305 -3.372 -5.261 1.00 32.15 C
ATOM 22 N3 A B 37 -9.240 -3.211 -6.048 1.00 31.88 N
ATOM 23 C4 A B 37 -9.247 -1.994 -6.613 1.00 32.51 C
ATOM 24 P C B 38 -8.147 -3.759 -12.422 1.00 34.64 P
ATOM 25 OP1 C B 38 -7.506 -4.509 -13.525 1.00 34.45 O
ATOM 26 OP2 C B 38 -9.001 -2.587 -12.716 1.00 34.77 O
ATOM 27 O5' C B 38 -9.017 -4.776 -11.540 1.00 34.15 O
TER
Atoms:
OP1: (-22.240,-2.167,1.149)
OP2: (-20.402,-0.852,-0.061)
C3': (-18.159,-5.095,1.658)
C1': (-17.238,-5.478,-0.484)
C5': (-20.484,-4.593,0.699)
O6: (-14.381,-1.101,-3.428)
O4': (-18.648,-5.461,-0.610)
C8: (-17.283,-2.976,-0.913)
C2: (-13.869,-4.611,-3.118)
C6: (-14.584,-2.261,-3.048)
C5: (-15.610,-2.737,-2.198)
C4: (-15.659,-4.080,-1.901)
P: (-21.152,-2.109,0.155)
C4': (-19.267,-5.499,0.698)
C2': (-16.936,-5.716,0.992)
O2': (-16.856,-7.109,1.231)
N1: (-13.745,-3.289,-3.474)
N2: (-12.960,-5.460,-3.638)
N3: (-14.825,-5.068,-2.319)
N7: (-16.642,-2.050,-1.570)
N9: (-16.737,-4.229,-1.059)
O5': (-20.078,-3.247,0.480)
O3': (-18.409,-5.648,2.944)
OP2: (-20.402,-0.852,-0.061)
C3': (-18.159,-5.095,1.658)
C1': (-17.238,-5.478,-0.484)
C5': (-20.484,-4.593,0.699)
O6: (-14.381,-1.101,-3.428)
O4': (-18.648,-5.461,-0.610)
C8: (-17.283,-2.976,-0.913)
C2: (-13.869,-4.611,-3.118)
C6: (-14.584,-2.261,-3.048)
C5: (-15.610,-2.737,-2.198)
C4: (-15.659,-4.080,-1.901)
P: (-21.152,-2.109,0.155)
C4': (-19.267,-5.499,0.698)
C2': (-16.936,-5.716,0.992)
O2': (-16.856,-7.109,1.231)
N1: (-13.745,-3.289,-3.474)
N2: (-12.960,-5.460,-3.638)
N3: (-14.825,-5.068,-2.319)
N7: (-16.642,-2.050,-1.570)
N9: (-16.737,-4.229,-1.059)
O5': (-20.078,-3.247,0.480)
O3': (-18.409,-5.648,2.944)
OP1: (-6.976,2.095,-12.231)
OP2: (-8.425,2.289,-10.132)
C3': (-7.312,-2.424,-10.326)
C1': (-7.115,-2.121,-7.986)
C5': (-6.095,-0.229,-10.876)
O4': (-6.307,-1.146,-8.627)
C8: (-8.757,-0.208,-7.779)
O2': (-6.448,-4.236,-8.941)
C6: (-11.278,-1.299,-5.584)
C5: (-10.200,-1.006,-6.442)
C4: (-9.247,-1.994,-6.613)
P: (-7.087,2.198,-10.758)
C4': (-6.150,-1.488,-10.026)
C2': (-7.409,-3.203,-9.020)
C2: (-10.305,-3.372,-5.261)
N1: (-11.302,-2.517,-5.002)
N3: (-9.240,-3.211,-6.048)
N6: (-12.267,-0.436,-5.326)
N7: (-9.877,0.119,-7.181)
N9: (-8.320,-1.469,-7.482)
O5': (-6.318,0.952,-10.105)
O3': (-6.999,-3.283,-11.414)
OP2: (-8.425,2.289,-10.132)
C3': (-7.312,-2.424,-10.326)
C1': (-7.115,-2.121,-7.986)
C5': (-6.095,-0.229,-10.876)
O4': (-6.307,-1.146,-8.627)
C8: (-8.757,-0.208,-7.779)
O2': (-6.448,-4.236,-8.941)
C6: (-11.278,-1.299,-5.584)
C5: (-10.200,-1.006,-6.442)
C4: (-9.247,-1.994,-6.613)
P: (-7.087,2.198,-10.758)
C4': (-6.150,-1.488,-10.026)
C2': (-7.409,-3.203,-9.020)
C2: (-10.305,-3.372,-5.261)
N1: (-11.302,-2.517,-5.002)
N3: (-9.240,-3.211,-6.048)
N6: (-12.267,-0.436,-5.326)
N7: (-9.877,0.119,-7.181)
N9: (-8.320,-1.469,-7.482)
O5': (-6.318,0.952,-10.105)
O3': (-6.999,-3.283,-11.414)
Image (generated by PyMOL):