Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1DUQ:A4:B9
Extra
PDB:
ATOM 1 O3' G A 3 9.478 -12.834 -11.674 1.00 37.07 O
ATOM 2 P G A 4 9.234 -11.428 -10.944 1.00 39.33 P
ATOM 3 OP1 G A 4 9.516 -11.734 -9.537 1.00 36.90 O
ATOM 4 OP2 G A 4 7.942 -10.785 -11.304 1.00 43.20 O
ATOM 5 O5' G A 4 10.383 -10.486 -11.543 1.00 37.14 O
ATOM 6 C5' G A 4 11.751 -10.701 -11.212 1.00 22.01 C
ATOM 7 C4' G A 4 12.635 -9.691 -11.932 1.00 35.52 C
ATOM 8 O4' G A 4 12.571 -9.873 -13.370 1.00 29.49 O
ATOM 9 C3' G A 4 12.275 -8.232 -11.755 1.00 21.06 C
ATOM 10 O3' G A 4 12.792 -7.791 -10.519 1.00 37.38 O
ATOM 11 C2' G A 4 13.009 -7.602 -12.927 1.00 34.57 C
ATOM 12 O2' G A 4 14.400 -7.527 -12.732 1.00 19.96 O
ATOM 13 C1' G A 4 12.721 -8.629 -14.019 1.00 30.78 C
ATOM 14 N9 G A 4 11.456 -8.290 -14.637 1.00 28.20 N
ATOM 15 C8 G A 4 10.254 -8.944 -14.485 1.00 33.60 C
ATOM 16 N7 G A 4 9.281 -8.371 -15.138 1.00 29.19 N
ATOM 17 C5 G A 4 9.879 -7.277 -15.759 1.00 33.73 C
ATOM 18 C6 G A 4 9.323 -6.264 -16.604 1.00 38.40 C
ATOM 19 O6 G A 4 8.163 -6.145 -17.003 1.00 40.82 O
ATOM 20 N1 G A 4 10.287 -5.329 -16.989 1.00 31.36 N
ATOM 21 C2 G A 4 11.615 -5.375 -16.627 1.00 38.87 C
ATOM 22 N2 G A 4 12.403 -4.404 -17.117 1.00 33.07 N
ATOM 23 N3 G A 4 12.138 -6.309 -15.850 1.00 33.96 N
ATOM 24 C4 G A 4 11.222 -7.220 -15.457 1.00 24.65 C
ATOM 25 P G A 5 11.960 -6.747 -9.636 1.00 30.19 P
ATOM 26 OP1 G A 5 12.573 -6.922 -8.299 1.00 38.53 O
ATOM 27 OP2 G A 5 10.489 -6.922 -9.794 1.00 44.07 O
ATOM 28 O5' G A 5 12.262 -5.324 -10.273 1.00 38.64 O
TER
ATOM 1 O3' U B 8 7.737 1.420 -26.511 1.00 72.46 O
ATOM 2 P A B 9 7.443 0.640 -27.888 1.00 68.54 P
ATOM 3 OP1 A B 9 8.286 1.255 -28.945 1.00 65.43 O
ATOM 4 OP2 A B 9 5.965 0.578 -28.081 1.00 64.97 O
ATOM 5 O5' A B 9 7.975 -0.824 -27.557 1.00 63.11 O
ATOM 6 C5' A B 9 7.911 -1.329 -26.227 1.00 54.52 C
ATOM 7 C4' A B 9 9.062 -0.786 -25.412 1.00 48.84 C
ATOM 8 O4' A B 9 8.521 -0.149 -24.230 1.00 40.04 O
ATOM 9 C3' A B 9 10.039 -1.818 -24.884 1.00 48.54 C
ATOM 10 O3' A B 9 11.047 -2.168 -25.844 1.00 37.44 O
ATOM 11 C2' A B 9 10.574 -1.129 -23.634 1.00 40.95 C
ATOM 12 O2' A B 9 11.525 -0.133 -23.929 1.00 44.20 O
ATOM 13 C1' A B 9 9.309 -0.462 -23.110 1.00 37.17 C
ATOM 14 N9 A B 9 8.521 -1.359 -22.283 1.00 42.84 N
ATOM 15 C8 A B 9 7.241 -1.810 -22.501 1.00 46.51 C
ATOM 16 N7 A B 9 6.834 -2.693 -21.614 1.00 48.32 N
ATOM 17 C5 A B 9 7.913 -2.813 -20.747 1.00 38.67 C
ATOM 18 C6 A B 9 8.130 -3.600 -19.597 1.00 30.34 C
ATOM 19 N6 A B 9 7.256 -4.465 -19.113 1.00 34.23 N
ATOM 20 N1 A B 9 9.318 -3.465 -18.953 1.00 36.59 N
ATOM 21 C2 A B 9 10.218 -2.611 -19.448 1.00 36.08 C
ATOM 22 N3 A B 9 10.136 -1.823 -20.532 1.00 45.38 N
ATOM 23 C4 A B 9 8.948 -1.976 -21.138 1.00 36.95 C
ATOM 24 P C B 10 11.439 -3.707 -26.030 1.00 41.25 P
ATOM 25 OP1 C B 10 12.499 -3.843 -27.030 1.00 43.43 O
ATOM 26 OP2 C B 10 10.161 -4.432 -26.212 1.00 40.29 O
ATOM 27 O5' C B 10 12.050 -4.141 -24.617 1.00 43.40 O
TER
ATOM 2 P G A 4 9.234 -11.428 -10.944 1.00 39.33 P
ATOM 3 OP1 G A 4 9.516 -11.734 -9.537 1.00 36.90 O
ATOM 4 OP2 G A 4 7.942 -10.785 -11.304 1.00 43.20 O
ATOM 5 O5' G A 4 10.383 -10.486 -11.543 1.00 37.14 O
ATOM 6 C5' G A 4 11.751 -10.701 -11.212 1.00 22.01 C
ATOM 7 C4' G A 4 12.635 -9.691 -11.932 1.00 35.52 C
ATOM 8 O4' G A 4 12.571 -9.873 -13.370 1.00 29.49 O
ATOM 9 C3' G A 4 12.275 -8.232 -11.755 1.00 21.06 C
ATOM 10 O3' G A 4 12.792 -7.791 -10.519 1.00 37.38 O
ATOM 11 C2' G A 4 13.009 -7.602 -12.927 1.00 34.57 C
ATOM 12 O2' G A 4 14.400 -7.527 -12.732 1.00 19.96 O
ATOM 13 C1' G A 4 12.721 -8.629 -14.019 1.00 30.78 C
ATOM 14 N9 G A 4 11.456 -8.290 -14.637 1.00 28.20 N
ATOM 15 C8 G A 4 10.254 -8.944 -14.485 1.00 33.60 C
ATOM 16 N7 G A 4 9.281 -8.371 -15.138 1.00 29.19 N
ATOM 17 C5 G A 4 9.879 -7.277 -15.759 1.00 33.73 C
ATOM 18 C6 G A 4 9.323 -6.264 -16.604 1.00 38.40 C
ATOM 19 O6 G A 4 8.163 -6.145 -17.003 1.00 40.82 O
ATOM 20 N1 G A 4 10.287 -5.329 -16.989 1.00 31.36 N
ATOM 21 C2 G A 4 11.615 -5.375 -16.627 1.00 38.87 C
ATOM 22 N2 G A 4 12.403 -4.404 -17.117 1.00 33.07 N
ATOM 23 N3 G A 4 12.138 -6.309 -15.850 1.00 33.96 N
ATOM 24 C4 G A 4 11.222 -7.220 -15.457 1.00 24.65 C
ATOM 25 P G A 5 11.960 -6.747 -9.636 1.00 30.19 P
ATOM 26 OP1 G A 5 12.573 -6.922 -8.299 1.00 38.53 O
ATOM 27 OP2 G A 5 10.489 -6.922 -9.794 1.00 44.07 O
ATOM 28 O5' G A 5 12.262 -5.324 -10.273 1.00 38.64 O
TER
ATOM 1 O3' U B 8 7.737 1.420 -26.511 1.00 72.46 O
ATOM 2 P A B 9 7.443 0.640 -27.888 1.00 68.54 P
ATOM 3 OP1 A B 9 8.286 1.255 -28.945 1.00 65.43 O
ATOM 4 OP2 A B 9 5.965 0.578 -28.081 1.00 64.97 O
ATOM 5 O5' A B 9 7.975 -0.824 -27.557 1.00 63.11 O
ATOM 6 C5' A B 9 7.911 -1.329 -26.227 1.00 54.52 C
ATOM 7 C4' A B 9 9.062 -0.786 -25.412 1.00 48.84 C
ATOM 8 O4' A B 9 8.521 -0.149 -24.230 1.00 40.04 O
ATOM 9 C3' A B 9 10.039 -1.818 -24.884 1.00 48.54 C
ATOM 10 O3' A B 9 11.047 -2.168 -25.844 1.00 37.44 O
ATOM 11 C2' A B 9 10.574 -1.129 -23.634 1.00 40.95 C
ATOM 12 O2' A B 9 11.525 -0.133 -23.929 1.00 44.20 O
ATOM 13 C1' A B 9 9.309 -0.462 -23.110 1.00 37.17 C
ATOM 14 N9 A B 9 8.521 -1.359 -22.283 1.00 42.84 N
ATOM 15 C8 A B 9 7.241 -1.810 -22.501 1.00 46.51 C
ATOM 16 N7 A B 9 6.834 -2.693 -21.614 1.00 48.32 N
ATOM 17 C5 A B 9 7.913 -2.813 -20.747 1.00 38.67 C
ATOM 18 C6 A B 9 8.130 -3.600 -19.597 1.00 30.34 C
ATOM 19 N6 A B 9 7.256 -4.465 -19.113 1.00 34.23 N
ATOM 20 N1 A B 9 9.318 -3.465 -18.953 1.00 36.59 N
ATOM 21 C2 A B 9 10.218 -2.611 -19.448 1.00 36.08 C
ATOM 22 N3 A B 9 10.136 -1.823 -20.532 1.00 45.38 N
ATOM 23 C4 A B 9 8.948 -1.976 -21.138 1.00 36.95 C
ATOM 24 P C B 10 11.439 -3.707 -26.030 1.00 41.25 P
ATOM 25 OP1 C B 10 12.499 -3.843 -27.030 1.00 43.43 O
ATOM 26 OP2 C B 10 10.161 -4.432 -26.212 1.00 40.29 O
ATOM 27 O5' C B 10 12.050 -4.141 -24.617 1.00 43.40 O
TER
Atoms:
OP1: (9.516,-11.734,-9.537)
OP2: (7.942,-10.785,-11.304)
C3': (12.275,-8.232,-11.755)
C1': (12.721,-8.629,-14.019)
C5': (11.751,-10.701,-11.212)
O6: (8.163,-6.145,-17.003)
O4': (12.571,-9.873,-13.370)
C8: (10.254,-8.944,-14.485)
C2: (11.615,-5.375,-16.627)
C6: (9.323,-6.264,-16.604)
C5: (9.879,-7.277,-15.759)
C4: (11.222,-7.220,-15.457)
P: (9.234,-11.428,-10.944)
C4': (12.635,-9.691,-11.932)
C2': (13.009,-7.602,-12.927)
O2': (14.400,-7.527,-12.732)
N1: (10.287,-5.329,-16.989)
N2: (12.403,-4.404,-17.117)
N3: (12.138,-6.309,-15.850)
N7: (9.281,-8.371,-15.138)
N9: (11.456,-8.290,-14.637)
O5': (10.383,-10.486,-11.543)
O3': (12.792,-7.791,-10.519)
OP2: (7.942,-10.785,-11.304)
C3': (12.275,-8.232,-11.755)
C1': (12.721,-8.629,-14.019)
C5': (11.751,-10.701,-11.212)
O6: (8.163,-6.145,-17.003)
O4': (12.571,-9.873,-13.370)
C8: (10.254,-8.944,-14.485)
C2: (11.615,-5.375,-16.627)
C6: (9.323,-6.264,-16.604)
C5: (9.879,-7.277,-15.759)
C4: (11.222,-7.220,-15.457)
P: (9.234,-11.428,-10.944)
C4': (12.635,-9.691,-11.932)
C2': (13.009,-7.602,-12.927)
O2': (14.400,-7.527,-12.732)
N1: (10.287,-5.329,-16.989)
N2: (12.403,-4.404,-17.117)
N3: (12.138,-6.309,-15.850)
N7: (9.281,-8.371,-15.138)
N9: (11.456,-8.290,-14.637)
O5': (10.383,-10.486,-11.543)
O3': (12.792,-7.791,-10.519)
OP1: (8.286,1.255,-28.945)
OP2: (5.965,0.578,-28.081)
C3': (10.039,-1.818,-24.884)
C1': (9.309,-0.462,-23.110)
C5': (7.911,-1.329,-26.227)
O4': (8.521,-0.149,-24.230)
C8: (7.241,-1.810,-22.501)
O2': (11.525,-0.133,-23.929)
C6: (8.130,-3.600,-19.597)
C5: (7.913,-2.813,-20.747)
C4: (8.948,-1.976,-21.138)
P: (7.443,0.640,-27.888)
C4': (9.062,-0.786,-25.412)
C2': (10.574,-1.129,-23.634)
C2: (10.218,-2.611,-19.448)
N1: (9.318,-3.465,-18.953)
N3: (10.136,-1.823,-20.532)
N6: (7.256,-4.465,-19.113)
N7: (6.834,-2.693,-21.614)
N9: (8.521,-1.359,-22.283)
O5': (7.975,-0.824,-27.557)
O3': (11.047,-2.168,-25.844)
OP2: (5.965,0.578,-28.081)
C3': (10.039,-1.818,-24.884)
C1': (9.309,-0.462,-23.110)
C5': (7.911,-1.329,-26.227)
O4': (8.521,-0.149,-24.230)
C8: (7.241,-1.810,-22.501)
O2': (11.525,-0.133,-23.929)
C6: (8.130,-3.600,-19.597)
C5: (7.913,-2.813,-20.747)
C4: (8.948,-1.976,-21.138)
P: (7.443,0.640,-27.888)
C4': (9.062,-0.786,-25.412)
C2': (10.574,-1.129,-23.634)
C2: (10.218,-2.611,-19.448)
N1: (9.318,-3.465,-18.953)
N3: (10.136,-1.823,-20.532)
N6: (7.256,-4.465,-19.113)
N7: (6.834,-2.693,-21.614)
N9: (8.521,-1.359,-22.283)
O5': (7.975,-0.824,-27.557)
O3': (11.047,-2.168,-25.844)
Image (generated by PyMOL):