Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3R8T:A1136:A1005
Extra
PDB:
ATOM 1 O3' A A1135 -87.680 105.747 199.390 1.00 17.00 O
ATOM 2 P A A1136 -87.594 106.396 200.830 1.00 2.92 P
ATOM 3 OP1 A A1136 -86.969 105.382 201.730 1.00 2.92 O
ATOM 4 OP2 A A1136 -88.940 106.922 201.165 1.00 2.92 O
ATOM 5 O5' A A1136 -86.603 107.600 200.577 1.00 2.92 O
ATOM 6 C5' A A1136 -86.858 108.503 199.514 1.00 2.92 C
ATOM 7 C4' A A1136 -85.671 108.641 198.612 1.00 2.92 C
ATOM 8 O4' A A1136 -84.484 108.296 199.360 1.00 2.92 O
ATOM 9 C3' A A1136 -85.685 107.745 197.383 1.00 2.92 C
ATOM 10 O3' A A1136 -85.175 108.463 196.262 1.00 2.92 O
ATOM 11 C2' A A1136 -84.741 106.612 197.762 1.00 2.92 C
ATOM 12 O2' A A1136 -84.088 106.006 196.669 1.00 2.92 O
ATOM 13 C1' A A1136 -83.754 107.321 198.670 1.00 2.92 C
ATOM 14 N9 A A1136 -83.139 106.448 199.644 1.00 2.63 N
ATOM 15 C8 A A1136 -83.709 105.909 200.753 1.00 2.63 C
ATOM 16 N7 A A1136 -82.879 105.141 201.411 1.00 2.63 N
ATOM 17 C5 A A1136 -81.701 105.191 200.667 1.00 2.63 C
ATOM 18 C6 A A1136 -80.440 104.595 200.827 1.00 2.63 C
ATOM 19 N6 A A1136 -80.154 103.802 201.862 1.00 2.63 N
ATOM 20 N1 A A1136 -79.482 104.854 199.902 1.00 2.63 N
ATOM 21 C2 A A1136 -79.785 105.665 198.892 1.00 2.63 C
ATOM 22 N3 A A1136 -80.931 106.295 198.629 1.00 2.63 N
ATOM 23 C4 A A1136 -81.851 106.007 199.570 1.00 2.63 C
ATOM 24 P A A1137 -86.082 109.608 195.587 1.00 7.08 P
ATOM 25 OP1 A A1137 -85.233 110.820 195.471 1.00 7.08 O
ATOM 26 OP2 A A1137 -87.341 109.678 196.373 1.00 7.08 O
ATOM 27 O5' A A1137 -86.403 109.036 194.137 1.00 7.08 O
TER
ATOM 1 O3' G B1004 -87.745 113.007 208.427 1.00 15.02 O
ATOM 2 P U B1005 -86.980 111.975 209.347 1.00 10.27 P
ATOM 3 OP1 U B1005 -87.582 112.031 210.697 1.00 10.27 O
ATOM 4 OP2 U B1005 -85.538 112.271 209.195 1.00 10.27 O
ATOM 5 O5' U B1005 -87.315 110.606 208.669 1.00 10.27 O
ATOM 6 C5' U B1005 -86.279 109.782 208.186 1.00 10.27 C
ATOM 7 C4' U B1005 -86.752 108.991 207.028 1.00 10.27 C
ATOM 8 O4' U B1005 -85.616 108.547 206.260 1.00 10.27 O
ATOM 9 C3' U B1005 -87.563 107.750 207.385 1.00 10.27 C
ATOM 10 O3' U B1005 -88.672 107.638 206.500 1.00 10.27 O
ATOM 11 C2' U B1005 -86.597 106.617 207.120 1.00 10.27 C
ATOM 12 O2' U B1005 -87.234 105.400 206.770 1.00 10.27 O
ATOM 13 C1' U B1005 -85.783 107.196 205.953 1.00 10.27 C
ATOM 14 N1 U B1005 -84.453 106.578 205.750 1.00 10.14 N
ATOM 15 C2 U B1005 -84.164 106.132 204.497 1.00 10.14 C
ATOM 16 O2 U B1005 -84.912 106.256 203.553 1.00 10.14 O
ATOM 17 N3 U B1005 -82.967 105.529 204.346 1.00 10.14 N
ATOM 18 C4 U B1005 -82.020 105.306 205.304 1.00 10.14 C
ATOM 19 O4 U B1005 -80.951 104.726 205.018 1.00 10.14 O
ATOM 20 C5 U B1005 -82.409 105.814 206.582 1.00 10.14 C
ATOM 21 C6 U B1005 -83.582 106.405 206.758 1.00 10.14 C
ATOM 22 P C B1006 -90.157 107.945 207.023 1.00 10.83 P
ATOM 23 OP1 C B1006 -90.456 106.951 208.097 1.00 10.83 O
ATOM 24 OP2 C B1006 -91.024 107.997 205.833 1.00 10.83 O
ATOM 25 O5' C B1006 -90.038 109.411 207.667 1.00 10.83 O
TER
ATOM 2 P A A1136 -87.594 106.396 200.830 1.00 2.92 P
ATOM 3 OP1 A A1136 -86.969 105.382 201.730 1.00 2.92 O
ATOM 4 OP2 A A1136 -88.940 106.922 201.165 1.00 2.92 O
ATOM 5 O5' A A1136 -86.603 107.600 200.577 1.00 2.92 O
ATOM 6 C5' A A1136 -86.858 108.503 199.514 1.00 2.92 C
ATOM 7 C4' A A1136 -85.671 108.641 198.612 1.00 2.92 C
ATOM 8 O4' A A1136 -84.484 108.296 199.360 1.00 2.92 O
ATOM 9 C3' A A1136 -85.685 107.745 197.383 1.00 2.92 C
ATOM 10 O3' A A1136 -85.175 108.463 196.262 1.00 2.92 O
ATOM 11 C2' A A1136 -84.741 106.612 197.762 1.00 2.92 C
ATOM 12 O2' A A1136 -84.088 106.006 196.669 1.00 2.92 O
ATOM 13 C1' A A1136 -83.754 107.321 198.670 1.00 2.92 C
ATOM 14 N9 A A1136 -83.139 106.448 199.644 1.00 2.63 N
ATOM 15 C8 A A1136 -83.709 105.909 200.753 1.00 2.63 C
ATOM 16 N7 A A1136 -82.879 105.141 201.411 1.00 2.63 N
ATOM 17 C5 A A1136 -81.701 105.191 200.667 1.00 2.63 C
ATOM 18 C6 A A1136 -80.440 104.595 200.827 1.00 2.63 C
ATOM 19 N6 A A1136 -80.154 103.802 201.862 1.00 2.63 N
ATOM 20 N1 A A1136 -79.482 104.854 199.902 1.00 2.63 N
ATOM 21 C2 A A1136 -79.785 105.665 198.892 1.00 2.63 C
ATOM 22 N3 A A1136 -80.931 106.295 198.629 1.00 2.63 N
ATOM 23 C4 A A1136 -81.851 106.007 199.570 1.00 2.63 C
ATOM 24 P A A1137 -86.082 109.608 195.587 1.00 7.08 P
ATOM 25 OP1 A A1137 -85.233 110.820 195.471 1.00 7.08 O
ATOM 26 OP2 A A1137 -87.341 109.678 196.373 1.00 7.08 O
ATOM 27 O5' A A1137 -86.403 109.036 194.137 1.00 7.08 O
TER
ATOM 1 O3' G B1004 -87.745 113.007 208.427 1.00 15.02 O
ATOM 2 P U B1005 -86.980 111.975 209.347 1.00 10.27 P
ATOM 3 OP1 U B1005 -87.582 112.031 210.697 1.00 10.27 O
ATOM 4 OP2 U B1005 -85.538 112.271 209.195 1.00 10.27 O
ATOM 5 O5' U B1005 -87.315 110.606 208.669 1.00 10.27 O
ATOM 6 C5' U B1005 -86.279 109.782 208.186 1.00 10.27 C
ATOM 7 C4' U B1005 -86.752 108.991 207.028 1.00 10.27 C
ATOM 8 O4' U B1005 -85.616 108.547 206.260 1.00 10.27 O
ATOM 9 C3' U B1005 -87.563 107.750 207.385 1.00 10.27 C
ATOM 10 O3' U B1005 -88.672 107.638 206.500 1.00 10.27 O
ATOM 11 C2' U B1005 -86.597 106.617 207.120 1.00 10.27 C
ATOM 12 O2' U B1005 -87.234 105.400 206.770 1.00 10.27 O
ATOM 13 C1' U B1005 -85.783 107.196 205.953 1.00 10.27 C
ATOM 14 N1 U B1005 -84.453 106.578 205.750 1.00 10.14 N
ATOM 15 C2 U B1005 -84.164 106.132 204.497 1.00 10.14 C
ATOM 16 O2 U B1005 -84.912 106.256 203.553 1.00 10.14 O
ATOM 17 N3 U B1005 -82.967 105.529 204.346 1.00 10.14 N
ATOM 18 C4 U B1005 -82.020 105.306 205.304 1.00 10.14 C
ATOM 19 O4 U B1005 -80.951 104.726 205.018 1.00 10.14 O
ATOM 20 C5 U B1005 -82.409 105.814 206.582 1.00 10.14 C
ATOM 21 C6 U B1005 -83.582 106.405 206.758 1.00 10.14 C
ATOM 22 P C B1006 -90.157 107.945 207.023 1.00 10.83 P
ATOM 23 OP1 C B1006 -90.456 106.951 208.097 1.00 10.83 O
ATOM 24 OP2 C B1006 -91.024 107.997 205.833 1.00 10.83 O
ATOM 25 O5' C B1006 -90.038 109.411 207.667 1.00 10.83 O
TER
Atoms:
OP1: (-86.969,105.382,201.730)
OP2: (-88.940,106.922,201.165)
C3': (-85.685,107.745,197.383)
C1': (-83.754,107.321,198.670)
C5': (-86.858,108.503,199.514)
O4': (-84.484,108.296,199.360)
C8: (-83.709,105.909,200.753)
O2': (-84.088,106.006,196.669)
C6: (-80.440,104.595,200.827)
C5: (-81.701,105.191,200.667)
C4: (-81.851,106.007,199.570)
P: (-87.594,106.396,200.830)
C4': (-85.671,108.641,198.612)
C2': (-84.741,106.612,197.762)
C2: (-79.785,105.665,198.892)
N1: (-79.482,104.854,199.902)
N3: (-80.931,106.295,198.629)
N6: (-80.154,103.802,201.862)
N7: (-82.879,105.141,201.411)
N9: (-83.139,106.448,199.644)
O5': (-86.603,107.600,200.577)
O3': (-85.175,108.463,196.262)
OP2: (-88.940,106.922,201.165)
C3': (-85.685,107.745,197.383)
C1': (-83.754,107.321,198.670)
C5': (-86.858,108.503,199.514)
O4': (-84.484,108.296,199.360)
C8: (-83.709,105.909,200.753)
O2': (-84.088,106.006,196.669)
C6: (-80.440,104.595,200.827)
C5: (-81.701,105.191,200.667)
C4: (-81.851,106.007,199.570)
P: (-87.594,106.396,200.830)
C4': (-85.671,108.641,198.612)
C2': (-84.741,106.612,197.762)
C2: (-79.785,105.665,198.892)
N1: (-79.482,104.854,199.902)
N3: (-80.931,106.295,198.629)
N6: (-80.154,103.802,201.862)
N7: (-82.879,105.141,201.411)
N9: (-83.139,106.448,199.644)
O5': (-86.603,107.600,200.577)
O3': (-85.175,108.463,196.262)
C4: (-82.020,105.306,205.304)
N3: (-82.967,105.529,204.346)
OP1: (-87.582,112.031,210.697)
OP2: (-85.538,112.271,209.195)
C2: (-84.164,106.132,204.497)
C1': (-85.783,107.196,205.953)
C3': (-87.563,107.750,207.385)
O5': (-87.315,110.606,208.669)
O4': (-85.616,108.547,206.260)
C5': (-86.279,109.782,208.186)
P: (-86.980,111.975,209.347)
C4': (-86.752,108.991,207.028)
C2': (-86.597,106.617,207.120)
O2': (-87.234,105.400,206.770)
N1: (-84.453,106.578,205.750)
O4: (-80.951,104.726,205.018)
O2: (-84.912,106.256,203.553)
C6: (-83.582,106.405,206.758)
C5: (-82.409,105.814,206.582)
O3': (-88.672,107.638,206.500)
N3: (-82.967,105.529,204.346)
OP1: (-87.582,112.031,210.697)
OP2: (-85.538,112.271,209.195)
C2: (-84.164,106.132,204.497)
C1': (-85.783,107.196,205.953)
C3': (-87.563,107.750,207.385)
O5': (-87.315,110.606,208.669)
O4': (-85.616,108.547,206.260)
C5': (-86.279,109.782,208.186)
P: (-86.980,111.975,209.347)
C4': (-86.752,108.991,207.028)
C2': (-86.597,106.617,207.120)
O2': (-87.234,105.400,206.770)
N1: (-84.453,106.578,205.750)
O4: (-80.951,104.726,205.018)
O2: (-84.912,106.256,203.553)
C6: (-83.582,106.405,206.758)
C5: (-82.409,105.814,206.582)
O3': (-88.672,107.638,206.500)
Image (generated by PyMOL):