Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1VTQ:A25:A43
Extra
PDB:
ATOM 1 O3' U A 24 10.347 9.656 -16.191 1.00 1.00 O
ATOM 2 P G A 25 9.063 8.908 -16.834 1.00 1.00 P
ATOM 3 OP1 G A 25 9.370 8.608 -18.254 1.00 1.00 O
ATOM 4 OP2 G A 25 7.941 9.873 -16.654 1.00 1.00 O
ATOM 5 O5' G A 25 8.882 7.636 -15.877 1.00 1.00 O
ATOM 6 C5' G A 25 8.984 6.262 -16.310 1.00 1.00 C
ATOM 7 C4' G A 25 8.176 5.426 -15.354 1.00 1.00 C
ATOM 8 O4' G A 25 8.375 5.888 -14.023 1.00 1.00 O
ATOM 9 C3' G A 25 6.663 5.508 -15.533 1.00 1.00 C
ATOM 10 O3' G A 25 6.162 4.719 -16.609 1.00 1.00 O
ATOM 11 C2' G A 25 6.150 5.018 -14.173 1.00 1.00 C
ATOM 12 O2' G A 25 6.247 3.617 -14.158 1.00 1.00 O
ATOM 13 C1' G A 25 7.194 5.684 -13.261 1.00 1.00 C
ATOM 14 N9 G A 25 6.585 6.936 -12.782 1.00 1.00 N
ATOM 15 C8 G A 25 6.741 8.207 -13.276 1.00 1.00 C
ATOM 16 N7 G A 25 6.060 9.112 -12.618 1.00 1.00 N
ATOM 17 C5 G A 25 5.409 8.384 -11.631 1.00 1.00 C
ATOM 18 C6 G A 25 4.522 8.785 -10.600 1.00 1.00 C
ATOM 19 O6 G A 25 4.125 9.928 -10.375 1.00 1.00 O
ATOM 20 N1 G A 25 4.076 7.765 -9.807 1.00 1.00 N
ATOM 21 C2 G A 25 4.462 6.473 -10.002 1.00 1.00 C
ATOM 22 N2 G A 25 3.937 5.596 -9.134 1.00 1.00 N
ATOM 23 N3 G A 25 5.288 6.038 -10.943 1.00 1.00 N
ATOM 24 C4 G A 25 5.722 7.044 -11.721 1.00 1.00 C
ATOM 25 P G A 26 4.673 5.011 -17.148 1.00 1.00 P
ATOM 26 OP1 G A 26 4.287 4.080 -18.254 1.00 1.00 O
ATOM 27 OP2 G A 26 4.763 6.412 -17.611 1.00 1.00 O
ATOM 28 O5' G A 26 3.726 4.732 -15.892 1.00 1.00 O
TER
ATOM 1 O3' C B 42 -5.409 13.471 -5.412 1.00 1.00 O
ATOM 2 P A B 43 -4.558 13.103 -4.111 1.00 1.00 P
ATOM 3 OP1 A B 43 -5.439 13.172 -2.900 1.00 1.00 O
ATOM 4 OP2 A B 43 -3.479 14.123 -4.096 1.00 1.00 O
ATOM 5 O5' A B 43 -4.076 11.594 -4.365 1.00 1.00 O
ATOM 6 C5' A B 43 -4.975 10.513 -4.036 1.00 1.00 C
ATOM 7 C4' A B 43 -4.323 9.221 -4.470 1.00 1.00 C
ATOM 8 O4' A B 43 -3.907 9.268 -5.831 1.00 1.00 O
ATOM 9 C3' A B 43 -3.027 8.894 -3.708 1.00 1.00 C
ATOM 10 O3' A B 43 -3.274 8.398 -2.407 1.00 1.00 O
ATOM 11 C2' A B 43 -2.394 7.861 -4.649 1.00 1.00 C
ATOM 12 O2' A B 43 -3.057 6.630 -4.380 1.00 1.00 O
ATOM 13 C1' A B 43 -2.744 8.452 -6.010 1.00 1.00 C
ATOM 14 N9 A B 43 -1.604 9.214 -6.533 1.00 1.00 N
ATOM 15 C8 A B 43 -1.387 10.567 -6.429 1.00 1.00 C
ATOM 16 N7 A B 43 -0.277 10.975 -6.997 1.00 1.00 N
ATOM 17 C5 A B 43 0.277 9.812 -7.505 1.00 1.00 C
ATOM 18 C6 A B 43 1.477 9.588 -8.222 1.00 1.00 C
ATOM 19 N6 A B 43 2.334 10.540 -8.551 1.00 1.00 N
ATOM 20 N1 A B 43 1.706 8.289 -8.581 1.00 1.00 N
ATOM 21 C2 A B 43 0.832 7.296 -8.252 1.00 1.00 C
ATOM 22 N3 A B 43 -0.308 7.439 -7.580 1.00 1.00 N
ATOM 23 C4 A B 43 -0.525 8.724 -7.236 1.00 1.00 C
ATOM 24 P G B 44 -2.563 9.051 -1.121 1.00 1.00 P
ATOM 25 OP1 G B 44 -3.419 8.935 0.105 1.00 1.00 O
ATOM 26 OP2 G B 44 -2.339 10.465 -1.525 1.00 1.00 O
ATOM 27 O5' G B 44 -1.248 8.153 -0.987 1.00 1.00 O
TER
ATOM 2 P G A 25 9.063 8.908 -16.834 1.00 1.00 P
ATOM 3 OP1 G A 25 9.370 8.608 -18.254 1.00 1.00 O
ATOM 4 OP2 G A 25 7.941 9.873 -16.654 1.00 1.00 O
ATOM 5 O5' G A 25 8.882 7.636 -15.877 1.00 1.00 O
ATOM 6 C5' G A 25 8.984 6.262 -16.310 1.00 1.00 C
ATOM 7 C4' G A 25 8.176 5.426 -15.354 1.00 1.00 C
ATOM 8 O4' G A 25 8.375 5.888 -14.023 1.00 1.00 O
ATOM 9 C3' G A 25 6.663 5.508 -15.533 1.00 1.00 C
ATOM 10 O3' G A 25 6.162 4.719 -16.609 1.00 1.00 O
ATOM 11 C2' G A 25 6.150 5.018 -14.173 1.00 1.00 C
ATOM 12 O2' G A 25 6.247 3.617 -14.158 1.00 1.00 O
ATOM 13 C1' G A 25 7.194 5.684 -13.261 1.00 1.00 C
ATOM 14 N9 G A 25 6.585 6.936 -12.782 1.00 1.00 N
ATOM 15 C8 G A 25 6.741 8.207 -13.276 1.00 1.00 C
ATOM 16 N7 G A 25 6.060 9.112 -12.618 1.00 1.00 N
ATOM 17 C5 G A 25 5.409 8.384 -11.631 1.00 1.00 C
ATOM 18 C6 G A 25 4.522 8.785 -10.600 1.00 1.00 C
ATOM 19 O6 G A 25 4.125 9.928 -10.375 1.00 1.00 O
ATOM 20 N1 G A 25 4.076 7.765 -9.807 1.00 1.00 N
ATOM 21 C2 G A 25 4.462 6.473 -10.002 1.00 1.00 C
ATOM 22 N2 G A 25 3.937 5.596 -9.134 1.00 1.00 N
ATOM 23 N3 G A 25 5.288 6.038 -10.943 1.00 1.00 N
ATOM 24 C4 G A 25 5.722 7.044 -11.721 1.00 1.00 C
ATOM 25 P G A 26 4.673 5.011 -17.148 1.00 1.00 P
ATOM 26 OP1 G A 26 4.287 4.080 -18.254 1.00 1.00 O
ATOM 27 OP2 G A 26 4.763 6.412 -17.611 1.00 1.00 O
ATOM 28 O5' G A 26 3.726 4.732 -15.892 1.00 1.00 O
TER
ATOM 1 O3' C B 42 -5.409 13.471 -5.412 1.00 1.00 O
ATOM 2 P A B 43 -4.558 13.103 -4.111 1.00 1.00 P
ATOM 3 OP1 A B 43 -5.439 13.172 -2.900 1.00 1.00 O
ATOM 4 OP2 A B 43 -3.479 14.123 -4.096 1.00 1.00 O
ATOM 5 O5' A B 43 -4.076 11.594 -4.365 1.00 1.00 O
ATOM 6 C5' A B 43 -4.975 10.513 -4.036 1.00 1.00 C
ATOM 7 C4' A B 43 -4.323 9.221 -4.470 1.00 1.00 C
ATOM 8 O4' A B 43 -3.907 9.268 -5.831 1.00 1.00 O
ATOM 9 C3' A B 43 -3.027 8.894 -3.708 1.00 1.00 C
ATOM 10 O3' A B 43 -3.274 8.398 -2.407 1.00 1.00 O
ATOM 11 C2' A B 43 -2.394 7.861 -4.649 1.00 1.00 C
ATOM 12 O2' A B 43 -3.057 6.630 -4.380 1.00 1.00 O
ATOM 13 C1' A B 43 -2.744 8.452 -6.010 1.00 1.00 C
ATOM 14 N9 A B 43 -1.604 9.214 -6.533 1.00 1.00 N
ATOM 15 C8 A B 43 -1.387 10.567 -6.429 1.00 1.00 C
ATOM 16 N7 A B 43 -0.277 10.975 -6.997 1.00 1.00 N
ATOM 17 C5 A B 43 0.277 9.812 -7.505 1.00 1.00 C
ATOM 18 C6 A B 43 1.477 9.588 -8.222 1.00 1.00 C
ATOM 19 N6 A B 43 2.334 10.540 -8.551 1.00 1.00 N
ATOM 20 N1 A B 43 1.706 8.289 -8.581 1.00 1.00 N
ATOM 21 C2 A B 43 0.832 7.296 -8.252 1.00 1.00 C
ATOM 22 N3 A B 43 -0.308 7.439 -7.580 1.00 1.00 N
ATOM 23 C4 A B 43 -0.525 8.724 -7.236 1.00 1.00 C
ATOM 24 P G B 44 -2.563 9.051 -1.121 1.00 1.00 P
ATOM 25 OP1 G B 44 -3.419 8.935 0.105 1.00 1.00 O
ATOM 26 OP2 G B 44 -2.339 10.465 -1.525 1.00 1.00 O
ATOM 27 O5' G B 44 -1.248 8.153 -0.987 1.00 1.00 O
TER
Atoms:
OP1: (9.370,8.608,-18.254)
OP2: (7.941,9.873,-16.654)
C3': (6.663,5.508,-15.533)
C1': (7.194,5.684,-13.261)
C5': (8.984,6.262,-16.310)
O6: (4.125,9.928,-10.375)
O4': (8.375,5.888,-14.023)
C8: (6.741,8.207,-13.276)
C2: (4.462,6.473,-10.002)
C6: (4.522,8.785,-10.600)
C5: (5.409,8.384,-11.631)
C4: (5.722,7.044,-11.721)
P: (9.063,8.908,-16.834)
C4': (8.176,5.426,-15.354)
C2': (6.150,5.018,-14.173)
O2': (6.247,3.617,-14.158)
N1: (4.076,7.765,-9.807)
N2: (3.937,5.596,-9.134)
N3: (5.288,6.038,-10.943)
N7: (6.060,9.112,-12.618)
N9: (6.585,6.936,-12.782)
O5': (8.882,7.636,-15.877)
O3': (6.162,4.719,-16.609)
OP2: (7.941,9.873,-16.654)
C3': (6.663,5.508,-15.533)
C1': (7.194,5.684,-13.261)
C5': (8.984,6.262,-16.310)
O6: (4.125,9.928,-10.375)
O4': (8.375,5.888,-14.023)
C8: (6.741,8.207,-13.276)
C2: (4.462,6.473,-10.002)
C6: (4.522,8.785,-10.600)
C5: (5.409,8.384,-11.631)
C4: (5.722,7.044,-11.721)
P: (9.063,8.908,-16.834)
C4': (8.176,5.426,-15.354)
C2': (6.150,5.018,-14.173)
O2': (6.247,3.617,-14.158)
N1: (4.076,7.765,-9.807)
N2: (3.937,5.596,-9.134)
N3: (5.288,6.038,-10.943)
N7: (6.060,9.112,-12.618)
N9: (6.585,6.936,-12.782)
O5': (8.882,7.636,-15.877)
O3': (6.162,4.719,-16.609)
OP1: (-5.439,13.172,-2.900)
OP2: (-3.479,14.123,-4.096)
C3': (-3.027,8.894,-3.708)
C1': (-2.744,8.452,-6.010)
C5': (-4.975,10.513,-4.036)
O4': (-3.907,9.268,-5.831)
C8: (-1.387,10.567,-6.429)
O2': (-3.057,6.630,-4.380)
C6: (1.477,9.588,-8.222)
C5: (0.277,9.812,-7.505)
C4: (-0.525,8.724,-7.236)
P: (-4.558,13.103,-4.111)
C4': (-4.323,9.221,-4.470)
C2': (-2.394,7.861,-4.649)
C2: (0.832,7.296,-8.252)
N1: (1.706,8.289,-8.581)
N3: (-0.308,7.439,-7.580)
N6: (2.334,10.540,-8.551)
N7: (-0.277,10.975,-6.997)
N9: (-1.604,9.214,-6.533)
O5': (-4.076,11.594,-4.365)
O3': (-3.274,8.398,-2.407)
OP2: (-3.479,14.123,-4.096)
C3': (-3.027,8.894,-3.708)
C1': (-2.744,8.452,-6.010)
C5': (-4.975,10.513,-4.036)
O4': (-3.907,9.268,-5.831)
C8: (-1.387,10.567,-6.429)
O2': (-3.057,6.630,-4.380)
C6: (1.477,9.588,-8.222)
C5: (0.277,9.812,-7.505)
C4: (-0.525,8.724,-7.236)
P: (-4.558,13.103,-4.111)
C4': (-4.323,9.221,-4.470)
C2': (-2.394,7.861,-4.649)
C2: (0.832,7.296,-8.252)
N1: (1.706,8.289,-8.581)
N3: (-0.308,7.439,-7.580)
N6: (2.334,10.540,-8.551)
N7: (-0.277,10.975,-6.997)
N9: (-1.604,9.214,-6.533)
O5': (-4.076,11.594,-4.365)
O3': (-3.274,8.398,-2.407)
Image (generated by PyMOL):