Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:1954:1984
Extra
PDB:
ATOM 1 O3' A A 953 -0.386 -33.945 11.365 1.00 58.78 O
ATOM 2 P G A 954 -1.797 -34.475 11.946 1.00 61.27 P
ATOM 3 OP1 G A 954 -2.392 -33.384 12.768 1.00 60.92 O
ATOM 4 OP2 G A 954 -1.553 -35.792 12.580 1.00 61.20 O
ATOM 5 O5' G A 954 -2.647 -34.672 10.624 1.00 62.01 O
ATOM 6 C5' G A 954 -2.788 -35.953 10.040 1.00 62.49 C
ATOM 7 C4' G A 954 -1.696 -36.226 9.055 1.00 62.67 C
ATOM 8 O4' G A 954 -0.447 -36.363 9.765 1.00 62.12 O
ATOM 9 C3' G A 954 -1.824 -37.522 8.259 1.00 63.25 C
ATOM 10 O3' G A 954 -2.703 -37.400 7.124 1.00 63.90 O
ATOM 11 C2' G A 954 -0.370 -37.796 7.877 1.00 63.12 C
ATOM 12 O2' G A 954 0.030 -36.943 6.813 1.00 63.31 O
ATOM 13 C1' G A 954 0.364 -37.334 9.133 1.00 62.37 C
ATOM 14 N9 G A 954 0.645 -38.439 10.089 1.00 62.13 N
ATOM 15 C8 G A 954 0.390 -38.460 11.460 1.00 61.66 C
ATOM 16 N7 G A 954 0.765 -39.556 12.088 1.00 61.55 N
ATOM 17 C5 G A 954 1.338 -40.303 11.055 1.00 61.97 C
ATOM 18 C6 G A 954 1.941 -41.588 11.077 1.00 62.10 C
ATOM 19 O6 G A 954 2.096 -42.364 12.027 1.00 61.87 O
ATOM 20 N1 G A 954 2.404 -41.956 9.820 1.00 62.57 N
ATOM 21 C2 G A 954 2.314 -41.201 8.682 1.00 62.88 C
ATOM 22 N2 G A 954 2.811 -41.730 7.542 1.00 63.34 N
ATOM 23 N3 G A 954 1.743 -40.023 8.675 1.00 62.76 N
ATOM 24 C4 G A 954 1.285 -39.628 9.852 1.00 62.32 C
ATOM 25 P A A 955 -4.024 -38.325 6.957 1.00 89.11 P
ATOM 26 OP1 A A 955 -4.834 -37.700 5.889 1.00 89.13 O
ATOM 27 OP2 A A 955 -4.625 -38.499 8.288 1.00 89.46 O
ATOM 28 O5' A A 955 -3.443 -39.720 6.451 1.00 89.02 O
TER
ATOM 1 O3' U B 983 5.418 -53.121 11.480 1.00 92.68 O
ATOM 2 P A B 984 6.875 -52.522 11.749 1.00 64.91 P
ATOM 3 OP1 A B 984 7.845 -53.641 11.560 1.00 65.12 O
ATOM 4 OP2 A B 984 6.826 -51.807 13.078 1.00 64.22 O
ATOM 5 O5' A B 984 7.042 -51.471 10.570 1.00 65.04 O
ATOM 6 C5' A B 984 7.427 -51.883 9.279 1.00 65.58 C
ATOM 7 C4' A B 984 7.145 -50.796 8.298 1.00 65.73 C
ATOM 8 O4' A B 984 5.803 -50.318 8.504 1.00 65.78 O
ATOM 9 C3' A B 984 7.938 -49.539 8.480 1.00 65.17 C
ATOM 10 O3' A B 984 9.248 -49.626 8.018 1.00 65.14 O
ATOM 11 C2' A B 984 7.114 -48.515 7.730 1.00 65.36 C
ATOM 12 O2' A B 984 7.334 -48.654 6.338 1.00 65.93 O
ATOM 13 C1' A B 984 5.706 -48.974 8.073 1.00 65.62 C
ATOM 14 N9 A B 984 5.119 -48.171 9.158 1.00 65.09 N
ATOM 15 C8 A B 984 4.999 -48.472 10.492 1.00 64.67 C
ATOM 16 N7 A B 984 4.438 -47.524 11.228 1.00 64.26 N
ATOM 17 C5 A B 984 4.171 -46.545 10.291 1.00 64.43 C
ATOM 18 C6 A B 984 3.588 -45.288 10.433 1.00 64.20 C
ATOM 19 N6 A B 984 3.155 -44.821 11.599 1.00 63.73 N
ATOM 20 N1 A B 984 3.464 -44.551 9.310 1.00 64.49 N
ATOM 21 C2 A B 984 3.898 -45.054 8.136 1.00 64.99 C
ATOM 22 N3 A B 984 4.479 -46.223 7.877 1.00 65.25 N
ATOM 23 C4 A B 984 4.579 -46.925 9.015 1.00 64.95 C
ATOM 24 P U B 985 10.262 -48.509 8.484 1.00 62.98 P
ATOM 25 OP1 U B 985 11.580 -48.888 7.920 1.00 63.08 O
ATOM 26 OP2 U B 985 10.091 -48.372 9.961 1.00 62.40 O
ATOM 27 O5' U B 985 9.710 -47.186 7.771 1.00 63.03 O
TER
ATOM 2 P G A 954 -1.797 -34.475 11.946 1.00 61.27 P
ATOM 3 OP1 G A 954 -2.392 -33.384 12.768 1.00 60.92 O
ATOM 4 OP2 G A 954 -1.553 -35.792 12.580 1.00 61.20 O
ATOM 5 O5' G A 954 -2.647 -34.672 10.624 1.00 62.01 O
ATOM 6 C5' G A 954 -2.788 -35.953 10.040 1.00 62.49 C
ATOM 7 C4' G A 954 -1.696 -36.226 9.055 1.00 62.67 C
ATOM 8 O4' G A 954 -0.447 -36.363 9.765 1.00 62.12 O
ATOM 9 C3' G A 954 -1.824 -37.522 8.259 1.00 63.25 C
ATOM 10 O3' G A 954 -2.703 -37.400 7.124 1.00 63.90 O
ATOM 11 C2' G A 954 -0.370 -37.796 7.877 1.00 63.12 C
ATOM 12 O2' G A 954 0.030 -36.943 6.813 1.00 63.31 O
ATOM 13 C1' G A 954 0.364 -37.334 9.133 1.00 62.37 C
ATOM 14 N9 G A 954 0.645 -38.439 10.089 1.00 62.13 N
ATOM 15 C8 G A 954 0.390 -38.460 11.460 1.00 61.66 C
ATOM 16 N7 G A 954 0.765 -39.556 12.088 1.00 61.55 N
ATOM 17 C5 G A 954 1.338 -40.303 11.055 1.00 61.97 C
ATOM 18 C6 G A 954 1.941 -41.588 11.077 1.00 62.10 C
ATOM 19 O6 G A 954 2.096 -42.364 12.027 1.00 61.87 O
ATOM 20 N1 G A 954 2.404 -41.956 9.820 1.00 62.57 N
ATOM 21 C2 G A 954 2.314 -41.201 8.682 1.00 62.88 C
ATOM 22 N2 G A 954 2.811 -41.730 7.542 1.00 63.34 N
ATOM 23 N3 G A 954 1.743 -40.023 8.675 1.00 62.76 N
ATOM 24 C4 G A 954 1.285 -39.628 9.852 1.00 62.32 C
ATOM 25 P A A 955 -4.024 -38.325 6.957 1.00 89.11 P
ATOM 26 OP1 A A 955 -4.834 -37.700 5.889 1.00 89.13 O
ATOM 27 OP2 A A 955 -4.625 -38.499 8.288 1.00 89.46 O
ATOM 28 O5' A A 955 -3.443 -39.720 6.451 1.00 89.02 O
TER
ATOM 1 O3' U B 983 5.418 -53.121 11.480 1.00 92.68 O
ATOM 2 P A B 984 6.875 -52.522 11.749 1.00 64.91 P
ATOM 3 OP1 A B 984 7.845 -53.641 11.560 1.00 65.12 O
ATOM 4 OP2 A B 984 6.826 -51.807 13.078 1.00 64.22 O
ATOM 5 O5' A B 984 7.042 -51.471 10.570 1.00 65.04 O
ATOM 6 C5' A B 984 7.427 -51.883 9.279 1.00 65.58 C
ATOM 7 C4' A B 984 7.145 -50.796 8.298 1.00 65.73 C
ATOM 8 O4' A B 984 5.803 -50.318 8.504 1.00 65.78 O
ATOM 9 C3' A B 984 7.938 -49.539 8.480 1.00 65.17 C
ATOM 10 O3' A B 984 9.248 -49.626 8.018 1.00 65.14 O
ATOM 11 C2' A B 984 7.114 -48.515 7.730 1.00 65.36 C
ATOM 12 O2' A B 984 7.334 -48.654 6.338 1.00 65.93 O
ATOM 13 C1' A B 984 5.706 -48.974 8.073 1.00 65.62 C
ATOM 14 N9 A B 984 5.119 -48.171 9.158 1.00 65.09 N
ATOM 15 C8 A B 984 4.999 -48.472 10.492 1.00 64.67 C
ATOM 16 N7 A B 984 4.438 -47.524 11.228 1.00 64.26 N
ATOM 17 C5 A B 984 4.171 -46.545 10.291 1.00 64.43 C
ATOM 18 C6 A B 984 3.588 -45.288 10.433 1.00 64.20 C
ATOM 19 N6 A B 984 3.155 -44.821 11.599 1.00 63.73 N
ATOM 20 N1 A B 984 3.464 -44.551 9.310 1.00 64.49 N
ATOM 21 C2 A B 984 3.898 -45.054 8.136 1.00 64.99 C
ATOM 22 N3 A B 984 4.479 -46.223 7.877 1.00 65.25 N
ATOM 23 C4 A B 984 4.579 -46.925 9.015 1.00 64.95 C
ATOM 24 P U B 985 10.262 -48.509 8.484 1.00 62.98 P
ATOM 25 OP1 U B 985 11.580 -48.888 7.920 1.00 63.08 O
ATOM 26 OP2 U B 985 10.091 -48.372 9.961 1.00 62.40 O
ATOM 27 O5' U B 985 9.710 -47.186 7.771 1.00 63.03 O
TER
Atoms:
OP1: (-2.392,-33.384,12.768)
OP2: (-1.553,-35.792,12.580)
C3': (-1.824,-37.522,8.259)
C1': (0.364,-37.334,9.133)
C5': (-2.788,-35.953,10.040)
O6: (2.096,-42.364,12.027)
O4': (-0.447,-36.363,9.765)
C8: (0.390,-38.460,11.460)
C2: (2.314,-41.201,8.682)
C6: (1.941,-41.588,11.077)
C5: (1.338,-40.303,11.055)
C4: (1.285,-39.628,9.852)
P: (-1.797,-34.475,11.946)
C4': (-1.696,-36.226,9.055)
C2': (-0.370,-37.796,7.877)
O2': (0.030,-36.943,6.813)
N1: (2.404,-41.956,9.820)
N2: (2.811,-41.730,7.542)
N3: (1.743,-40.023,8.675)
N7: (0.765,-39.556,12.088)
N9: (0.645,-38.439,10.089)
O5': (-2.647,-34.672,10.624)
O3': (-2.703,-37.400,7.124)
OP2: (-1.553,-35.792,12.580)
C3': (-1.824,-37.522,8.259)
C1': (0.364,-37.334,9.133)
C5': (-2.788,-35.953,10.040)
O6: (2.096,-42.364,12.027)
O4': (-0.447,-36.363,9.765)
C8: (0.390,-38.460,11.460)
C2: (2.314,-41.201,8.682)
C6: (1.941,-41.588,11.077)
C5: (1.338,-40.303,11.055)
C4: (1.285,-39.628,9.852)
P: (-1.797,-34.475,11.946)
C4': (-1.696,-36.226,9.055)
C2': (-0.370,-37.796,7.877)
O2': (0.030,-36.943,6.813)
N1: (2.404,-41.956,9.820)
N2: (2.811,-41.730,7.542)
N3: (1.743,-40.023,8.675)
N7: (0.765,-39.556,12.088)
N9: (0.645,-38.439,10.089)
O5': (-2.647,-34.672,10.624)
O3': (-2.703,-37.400,7.124)
OP1: (7.845,-53.641,11.560)
OP2: (6.826,-51.807,13.078)
C3': (7.938,-49.539,8.480)
C1': (5.706,-48.974,8.073)
C5': (7.427,-51.883,9.279)
O4': (5.803,-50.318,8.504)
C8: (4.999,-48.472,10.492)
O2': (7.334,-48.654,6.338)
C6: (3.588,-45.288,10.433)
C5: (4.171,-46.545,10.291)
C4: (4.579,-46.925,9.015)
P: (6.875,-52.522,11.749)
C4': (7.145,-50.796,8.298)
C2': (7.114,-48.515,7.730)
C2: (3.898,-45.054,8.136)
N1: (3.464,-44.551,9.310)
N3: (4.479,-46.223,7.877)
N6: (3.155,-44.821,11.599)
N7: (4.438,-47.524,11.228)
N9: (5.119,-48.171,9.158)
O5': (7.042,-51.471,10.570)
O3': (9.248,-49.626,8.018)
OP2: (6.826,-51.807,13.078)
C3': (7.938,-49.539,8.480)
C1': (5.706,-48.974,8.073)
C5': (7.427,-51.883,9.279)
O4': (5.803,-50.318,8.504)
C8: (4.999,-48.472,10.492)
O2': (7.334,-48.654,6.338)
C6: (3.588,-45.288,10.433)
C5: (4.171,-46.545,10.291)
C4: (4.579,-46.925,9.015)
P: (6.875,-52.522,11.749)
C4': (7.145,-50.796,8.298)
C2': (7.114,-48.515,7.730)
C2: (3.898,-45.054,8.136)
N1: (3.464,-44.551,9.310)
N3: (4.479,-46.223,7.877)
N6: (3.155,-44.821,11.599)
N7: (4.438,-47.524,11.228)
N9: (5.119,-48.171,9.158)
O5': (7.042,-51.471,10.570)
O3': (9.248,-49.626,8.018)
Image (generated by PyMOL):