Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:1504:1476
Extra
PDB:
ATOM 1 O3' A A 503 59.942 -0.616 -35.622 1.00 79.54 O
ATOM 2 P G A 504 60.792 -1.863 -35.104 1.00 76.82 P
ATOM 3 OP1 G A 504 62.173 -1.378 -34.858 1.00 76.69 O
ATOM 4 OP2 G A 504 60.588 -2.969 -36.074 1.00 77.43 O
ATOM 5 O5' G A 504 60.078 -2.219 -33.737 1.00 75.98 O
ATOM 6 C5' G A 504 59.528 -3.510 -33.518 1.00 75.85 C
ATOM 7 C4' G A 504 58.308 -3.439 -32.640 1.00 75.31 C
ATOM 8 O4' G A 504 57.132 -3.187 -33.450 1.00 75.81 O
ATOM 9 C3' G A 504 57.961 -4.698 -31.866 1.00 74.86 C
ATOM 10 O3' G A 504 58.712 -4.836 -30.685 1.00 74.15 O
ATOM 11 C2' G A 504 56.471 -4.528 -31.613 1.00 74.72 C
ATOM 12 O2' G A 504 56.238 -3.619 -30.546 1.00 74.07 O
ATOM 13 C1' G A 504 56.020 -3.881 -32.922 1.00 75.51 C
ATOM 14 N9 G A 504 55.595 -4.905 -33.903 1.00 76.13 N
ATOM 15 C8 G A 504 56.266 -5.330 -35.029 1.00 76.82 C
ATOM 16 N7 G A 504 55.632 -6.286 -35.663 1.00 77.25 N
ATOM 17 C5 G A 504 54.494 -6.531 -34.897 1.00 76.80 C
ATOM 18 C6 G A 504 53.428 -7.452 -35.060 1.00 76.95 C
ATOM 19 O6 G A 504 53.259 -8.272 -35.964 1.00 77.55 O
ATOM 20 N1 G A 504 52.479 -7.365 -34.056 1.00 76.35 N
ATOM 21 C2 G A 504 52.535 -6.485 -33.012 1.00 75.68 C
ATOM 22 N2 G A 504 51.538 -6.511 -32.103 1.00 75.15 N
ATOM 23 N3 G A 504 53.530 -5.634 -32.851 1.00 75.53 N
ATOM 24 C4 G A 504 54.469 -5.698 -33.812 1.00 76.11 C
ATOM 25 P C A 505 59.090 -6.291 -30.124 1.00 72.49 P
ATOM 26 OP1 C A 505 60.049 -6.081 -29.008 1.00 71.83 O
ATOM 27 OP2 C A 505 59.505 -7.129 -31.288 1.00 73.20 O
ATOM 28 O5' C A 505 57.710 -6.810 -29.558 1.00 72.17 O
TER
ATOM 1 O3' G B 475 45.992 -16.202 -34.990 1.00 96.08 O
ATOM 2 P A B 476 45.127 -15.370 -36.048 1.00 97.75 P
ATOM 3 OP1 A B 476 44.017 -16.243 -36.485 1.00 98.17 O
ATOM 4 OP2 A B 476 46.074 -14.852 -37.064 1.00 98.31 O
ATOM 5 O5' A B 476 44.547 -14.165 -35.184 1.00 97.15 O
ATOM 6 C5' A B 476 44.000 -14.392 -33.892 1.00 96.38 C
ATOM 7 C4' A B 476 44.630 -13.488 -32.857 1.00 95.63 C
ATOM 8 O4' A B 476 46.061 -13.457 -33.045 1.00 95.66 O
ATOM 9 C3' A B 476 44.197 -12.030 -32.899 1.00 95.60 C
ATOM 10 O3' A B 476 43.011 -11.803 -32.151 1.00 95.20 O
ATOM 11 C2' A B 476 45.407 -11.272 -32.357 1.00 95.15 C
ATOM 12 O2' A B 476 45.335 -11.156 -30.951 1.00 94.28 O
ATOM 13 C1' A B 476 46.575 -12.195 -32.710 1.00 95.35 C
ATOM 14 N9 A B 476 47.386 -11.696 -33.844 1.00 95.98 N
ATOM 15 C8 A B 476 47.452 -12.191 -35.126 1.00 96.81 C
ATOM 16 N7 A B 476 48.290 -11.550 -35.908 1.00 97.23 N
ATOM 17 C5 A B 476 48.835 -10.567 -35.091 1.00 96.64 C
ATOM 18 C6 A B 476 49.792 -9.552 -35.319 1.00 96.70 C
ATOM 19 N6 A B 476 50.409 -9.326 -36.485 1.00 97.40 N
ATOM 20 N1 A B 476 50.104 -8.749 -34.288 1.00 96.00 N
ATOM 21 C2 A B 476 49.496 -8.952 -33.115 1.00 95.31 C
ATOM 22 N3 A B 476 48.591 -9.861 -32.771 1.00 95.17 N
ATOM 23 C4 A B 476 48.295 -10.653 -33.816 1.00 95.87 C
ATOM 24 P A B 477 42.045 -10.567 -32.504 1.00 86.49 P
ATOM 25 OP1 A B 477 40.756 -10.796 -31.796 1.00 86.16 O
ATOM 26 OP2 A B 477 42.041 -10.422 -33.994 1.00 87.41 O
ATOM 27 O5' A B 477 42.798 -9.332 -31.848 1.00 85.98 O
TER
ATOM 2 P G A 504 60.792 -1.863 -35.104 1.00 76.82 P
ATOM 3 OP1 G A 504 62.173 -1.378 -34.858 1.00 76.69 O
ATOM 4 OP2 G A 504 60.588 -2.969 -36.074 1.00 77.43 O
ATOM 5 O5' G A 504 60.078 -2.219 -33.737 1.00 75.98 O
ATOM 6 C5' G A 504 59.528 -3.510 -33.518 1.00 75.85 C
ATOM 7 C4' G A 504 58.308 -3.439 -32.640 1.00 75.31 C
ATOM 8 O4' G A 504 57.132 -3.187 -33.450 1.00 75.81 O
ATOM 9 C3' G A 504 57.961 -4.698 -31.866 1.00 74.86 C
ATOM 10 O3' G A 504 58.712 -4.836 -30.685 1.00 74.15 O
ATOM 11 C2' G A 504 56.471 -4.528 -31.613 1.00 74.72 C
ATOM 12 O2' G A 504 56.238 -3.619 -30.546 1.00 74.07 O
ATOM 13 C1' G A 504 56.020 -3.881 -32.922 1.00 75.51 C
ATOM 14 N9 G A 504 55.595 -4.905 -33.903 1.00 76.13 N
ATOM 15 C8 G A 504 56.266 -5.330 -35.029 1.00 76.82 C
ATOM 16 N7 G A 504 55.632 -6.286 -35.663 1.00 77.25 N
ATOM 17 C5 G A 504 54.494 -6.531 -34.897 1.00 76.80 C
ATOM 18 C6 G A 504 53.428 -7.452 -35.060 1.00 76.95 C
ATOM 19 O6 G A 504 53.259 -8.272 -35.964 1.00 77.55 O
ATOM 20 N1 G A 504 52.479 -7.365 -34.056 1.00 76.35 N
ATOM 21 C2 G A 504 52.535 -6.485 -33.012 1.00 75.68 C
ATOM 22 N2 G A 504 51.538 -6.511 -32.103 1.00 75.15 N
ATOM 23 N3 G A 504 53.530 -5.634 -32.851 1.00 75.53 N
ATOM 24 C4 G A 504 54.469 -5.698 -33.812 1.00 76.11 C
ATOM 25 P C A 505 59.090 -6.291 -30.124 1.00 72.49 P
ATOM 26 OP1 C A 505 60.049 -6.081 -29.008 1.00 71.83 O
ATOM 27 OP2 C A 505 59.505 -7.129 -31.288 1.00 73.20 O
ATOM 28 O5' C A 505 57.710 -6.810 -29.558 1.00 72.17 O
TER
ATOM 1 O3' G B 475 45.992 -16.202 -34.990 1.00 96.08 O
ATOM 2 P A B 476 45.127 -15.370 -36.048 1.00 97.75 P
ATOM 3 OP1 A B 476 44.017 -16.243 -36.485 1.00 98.17 O
ATOM 4 OP2 A B 476 46.074 -14.852 -37.064 1.00 98.31 O
ATOM 5 O5' A B 476 44.547 -14.165 -35.184 1.00 97.15 O
ATOM 6 C5' A B 476 44.000 -14.392 -33.892 1.00 96.38 C
ATOM 7 C4' A B 476 44.630 -13.488 -32.857 1.00 95.63 C
ATOM 8 O4' A B 476 46.061 -13.457 -33.045 1.00 95.66 O
ATOM 9 C3' A B 476 44.197 -12.030 -32.899 1.00 95.60 C
ATOM 10 O3' A B 476 43.011 -11.803 -32.151 1.00 95.20 O
ATOM 11 C2' A B 476 45.407 -11.272 -32.357 1.00 95.15 C
ATOM 12 O2' A B 476 45.335 -11.156 -30.951 1.00 94.28 O
ATOM 13 C1' A B 476 46.575 -12.195 -32.710 1.00 95.35 C
ATOM 14 N9 A B 476 47.386 -11.696 -33.844 1.00 95.98 N
ATOM 15 C8 A B 476 47.452 -12.191 -35.126 1.00 96.81 C
ATOM 16 N7 A B 476 48.290 -11.550 -35.908 1.00 97.23 N
ATOM 17 C5 A B 476 48.835 -10.567 -35.091 1.00 96.64 C
ATOM 18 C6 A B 476 49.792 -9.552 -35.319 1.00 96.70 C
ATOM 19 N6 A B 476 50.409 -9.326 -36.485 1.00 97.40 N
ATOM 20 N1 A B 476 50.104 -8.749 -34.288 1.00 96.00 N
ATOM 21 C2 A B 476 49.496 -8.952 -33.115 1.00 95.31 C
ATOM 22 N3 A B 476 48.591 -9.861 -32.771 1.00 95.17 N
ATOM 23 C4 A B 476 48.295 -10.653 -33.816 1.00 95.87 C
ATOM 24 P A B 477 42.045 -10.567 -32.504 1.00 86.49 P
ATOM 25 OP1 A B 477 40.756 -10.796 -31.796 1.00 86.16 O
ATOM 26 OP2 A B 477 42.041 -10.422 -33.994 1.00 87.41 O
ATOM 27 O5' A B 477 42.798 -9.332 -31.848 1.00 85.98 O
TER
Atoms:
OP1: (62.173,-1.378,-34.858)
OP2: (60.588,-2.969,-36.074)
C3': (57.961,-4.698,-31.866)
C1': (56.020,-3.881,-32.922)
C5': (59.528,-3.510,-33.518)
O6: (53.259,-8.272,-35.964)
O4': (57.132,-3.187,-33.450)
C8: (56.266,-5.330,-35.029)
C2: (52.535,-6.485,-33.012)
C6: (53.428,-7.452,-35.060)
C5: (54.494,-6.531,-34.897)
C4: (54.469,-5.698,-33.812)
P: (60.792,-1.863,-35.104)
C4': (58.308,-3.439,-32.640)
C2': (56.471,-4.528,-31.613)
O2': (56.238,-3.619,-30.546)
N1: (52.479,-7.365,-34.056)
N2: (51.538,-6.511,-32.103)
N3: (53.530,-5.634,-32.851)
N7: (55.632,-6.286,-35.663)
N9: (55.595,-4.905,-33.903)
O5': (60.078,-2.219,-33.737)
O3': (58.712,-4.836,-30.685)
OP2: (60.588,-2.969,-36.074)
C3': (57.961,-4.698,-31.866)
C1': (56.020,-3.881,-32.922)
C5': (59.528,-3.510,-33.518)
O6: (53.259,-8.272,-35.964)
O4': (57.132,-3.187,-33.450)
C8: (56.266,-5.330,-35.029)
C2: (52.535,-6.485,-33.012)
C6: (53.428,-7.452,-35.060)
C5: (54.494,-6.531,-34.897)
C4: (54.469,-5.698,-33.812)
P: (60.792,-1.863,-35.104)
C4': (58.308,-3.439,-32.640)
C2': (56.471,-4.528,-31.613)
O2': (56.238,-3.619,-30.546)
N1: (52.479,-7.365,-34.056)
N2: (51.538,-6.511,-32.103)
N3: (53.530,-5.634,-32.851)
N7: (55.632,-6.286,-35.663)
N9: (55.595,-4.905,-33.903)
O5': (60.078,-2.219,-33.737)
O3': (58.712,-4.836,-30.685)
OP1: (44.017,-16.243,-36.485)
OP2: (46.074,-14.852,-37.064)
C3': (44.197,-12.030,-32.899)
C1': (46.575,-12.195,-32.710)
C5': (44.000,-14.392,-33.892)
O4': (46.061,-13.457,-33.045)
C8: (47.452,-12.191,-35.126)
O2': (45.335,-11.156,-30.951)
C6: (49.792,-9.552,-35.319)
C5: (48.835,-10.567,-35.091)
C4: (48.295,-10.653,-33.816)
P: (45.127,-15.370,-36.048)
C4': (44.630,-13.488,-32.857)
C2': (45.407,-11.272,-32.357)
C2: (49.496,-8.952,-33.115)
N1: (50.104,-8.749,-34.288)
N3: (48.591,-9.861,-32.771)
N6: (50.409,-9.326,-36.485)
N7: (48.290,-11.550,-35.908)
N9: (47.386,-11.696,-33.844)
O5': (44.547,-14.165,-35.184)
O3': (43.011,-11.803,-32.151)
OP2: (46.074,-14.852,-37.064)
C3': (44.197,-12.030,-32.899)
C1': (46.575,-12.195,-32.710)
C5': (44.000,-14.392,-33.892)
O4': (46.061,-13.457,-33.045)
C8: (47.452,-12.191,-35.126)
O2': (45.335,-11.156,-30.951)
C6: (49.792,-9.552,-35.319)
C5: (48.835,-10.567,-35.091)
C4: (48.295,-10.653,-33.816)
P: (45.127,-15.370,-36.048)
C4': (44.630,-13.488,-32.857)
C2': (45.407,-11.272,-32.357)
C2: (49.496,-8.952,-33.115)
N1: (50.104,-8.749,-34.288)
N3: (48.591,-9.861,-32.771)
N6: (50.409,-9.326,-36.485)
N7: (48.290,-11.550,-35.908)
N9: (47.386,-11.696,-33.844)
O5': (44.547,-14.165,-35.184)
O3': (43.011,-11.803,-32.151)
Image (generated by PyMOL):