Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3SD1:A43:A33
Extra
PDB:
ATOM 1 O3' C A 42 5.937 -12.864 30.919 1.00 50.30 O
ATOM 2 P G A 43 4.691 -11.947 30.478 1.00 46.91 P
ATOM 3 OP1 G A 43 5.246 -10.663 29.981 1.00 40.59 O
ATOM 4 OP2 G A 43 3.740 -11.919 31.617 1.00 44.33 O
ATOM 5 O5' G A 43 4.063 -12.769 29.270 1.00 34.59 O
ATOM 6 C5' G A 43 4.784 -12.946 28.061 1.00 34.42 C
ATOM 7 C4' G A 43 4.023 -13.806 27.089 1.00 34.52 C
ATOM 8 O4' G A 43 3.912 -15.159 27.612 1.00 32.25 O
ATOM 9 C3' G A 43 2.583 -13.396 26.828 1.00 30.37 C
ATOM 10 O3' G A 43 2.466 -12.345 25.890 1.00 31.61 O
ATOM 11 C2' G A 43 1.952 -14.698 26.372 1.00 28.05 C
ATOM 12 O2' G A 43 2.339 -15.001 25.040 1.00 32.93 O
ATOM 13 C1' G A 43 2.639 -15.687 27.307 1.00 30.88 C
ATOM 14 N9 G A 43 1.892 -15.847 28.568 1.00 29.25 N
ATOM 15 C8 G A 43 2.280 -15.456 29.827 1.00 30.23 C
ATOM 16 N7 G A 43 1.387 -15.726 30.740 1.00 31.62 N
ATOM 17 C5 G A 43 0.346 -16.325 30.039 1.00 32.14 C
ATOM 18 C6 G A 43 -0.900 -16.837 30.487 1.00 28.20 C
ATOM 19 O6 G A 43 -1.354 -16.866 31.635 1.00 27.08 O
ATOM 20 N1 G A 43 -1.650 -17.354 29.437 1.00 28.32 N
ATOM 21 C2 G A 43 -1.257 -17.380 28.121 1.00 27.70 C
ATOM 22 N2 G A 43 -2.120 -17.922 27.249 1.00 27.41 N
ATOM 23 N3 G A 43 -0.102 -16.908 27.692 1.00 28.13 N
ATOM 24 C4 G A 43 0.643 -16.402 28.696 1.00 28.70 C
ATOM 25 P U A 44 1.364 -11.195 26.102 1.00 34.59 P
ATOM 26 OP1 U A 44 1.464 -10.278 24.940 1.00 37.78 O
ATOM 27 OP2 U A 44 1.561 -10.643 27.464 1.00 29.83 O
ATOM 28 O5' U A 44 -0.008 -12.002 26.040 1.00 28.03 O
TER
ATOM 1 O3' A B 32 -11.950 -18.667 35.332 1.00 30.04 O
ATOM 2 P A B 33 -11.372 -20.153 35.135 1.00 32.32 P
ATOM 3 OP1 A B 33 -12.497 -21.091 35.375 1.00 36.30 O
ATOM 4 OP2 A B 33 -10.156 -20.269 35.977 1.00 26.67 O
ATOM 5 O5' A B 33 -10.971 -20.173 33.597 1.00 28.91 O
ATOM 6 C5' A B 33 -11.943 -19.943 32.588 1.00 28.66 C
ATOM 7 C4' A B 33 -11.316 -19.909 31.220 1.00 28.19 C
ATOM 8 O4' A B 33 -10.498 -18.718 31.083 1.00 29.04 O
ATOM 9 C3' A B 33 -10.362 -21.047 30.899 1.00 30.30 C
ATOM 10 O3' A B 33 -11.026 -22.238 30.513 1.00 27.15 O
ATOM 11 C2' A B 33 -9.490 -20.446 29.806 1.00 28.78 C
ATOM 12 O2' A B 33 -10.176 -20.442 28.563 1.00 30.69 O
ATOM 13 C1' A B 33 -9.364 -19.001 30.290 1.00 28.05 C
ATOM 14 N9 A B 33 -8.157 -18.800 31.115 1.00 28.83 N
ATOM 15 C8 A B 33 -8.045 -18.911 32.479 1.00 27.93 C
ATOM 16 N7 A B 33 -6.839 -18.673 32.931 1.00 25.82 N
ATOM 17 C5 A B 33 -6.105 -18.387 31.787 1.00 27.72 C
ATOM 18 C6 A B 33 -4.756 -18.050 31.586 1.00 24.62 C
ATOM 19 N6 A B 33 -3.863 -17.938 32.569 1.00 21.89 N
ATOM 20 N1 A B 33 -4.347 -17.826 30.319 1.00 27.06 N
ATOM 21 C2 A B 33 -5.237 -17.935 29.326 1.00 26.51 C
ATOM 22 N3 A B 33 -6.529 -18.245 29.390 1.00 29.43 N
ATOM 23 C4 A B 33 -6.905 -18.460 30.662 1.00 28.16 C
ATOM 24 P U B 34 -10.203 -23.609 30.378 1.00 36.17 P
ATOM 25 OP1 U B 34 -11.180 -24.676 30.039 1.00 38.08 O
ATOM 26 OP2 U B 34 -9.388 -23.754 31.606 1.00 29.77 O
ATOM 27 O5' U B 34 -9.260 -23.321 29.132 1.00 30.74 O
TER
ATOM 2 P G A 43 4.691 -11.947 30.478 1.00 46.91 P
ATOM 3 OP1 G A 43 5.246 -10.663 29.981 1.00 40.59 O
ATOM 4 OP2 G A 43 3.740 -11.919 31.617 1.00 44.33 O
ATOM 5 O5' G A 43 4.063 -12.769 29.270 1.00 34.59 O
ATOM 6 C5' G A 43 4.784 -12.946 28.061 1.00 34.42 C
ATOM 7 C4' G A 43 4.023 -13.806 27.089 1.00 34.52 C
ATOM 8 O4' G A 43 3.912 -15.159 27.612 1.00 32.25 O
ATOM 9 C3' G A 43 2.583 -13.396 26.828 1.00 30.37 C
ATOM 10 O3' G A 43 2.466 -12.345 25.890 1.00 31.61 O
ATOM 11 C2' G A 43 1.952 -14.698 26.372 1.00 28.05 C
ATOM 12 O2' G A 43 2.339 -15.001 25.040 1.00 32.93 O
ATOM 13 C1' G A 43 2.639 -15.687 27.307 1.00 30.88 C
ATOM 14 N9 G A 43 1.892 -15.847 28.568 1.00 29.25 N
ATOM 15 C8 G A 43 2.280 -15.456 29.827 1.00 30.23 C
ATOM 16 N7 G A 43 1.387 -15.726 30.740 1.00 31.62 N
ATOM 17 C5 G A 43 0.346 -16.325 30.039 1.00 32.14 C
ATOM 18 C6 G A 43 -0.900 -16.837 30.487 1.00 28.20 C
ATOM 19 O6 G A 43 -1.354 -16.866 31.635 1.00 27.08 O
ATOM 20 N1 G A 43 -1.650 -17.354 29.437 1.00 28.32 N
ATOM 21 C2 G A 43 -1.257 -17.380 28.121 1.00 27.70 C
ATOM 22 N2 G A 43 -2.120 -17.922 27.249 1.00 27.41 N
ATOM 23 N3 G A 43 -0.102 -16.908 27.692 1.00 28.13 N
ATOM 24 C4 G A 43 0.643 -16.402 28.696 1.00 28.70 C
ATOM 25 P U A 44 1.364 -11.195 26.102 1.00 34.59 P
ATOM 26 OP1 U A 44 1.464 -10.278 24.940 1.00 37.78 O
ATOM 27 OP2 U A 44 1.561 -10.643 27.464 1.00 29.83 O
ATOM 28 O5' U A 44 -0.008 -12.002 26.040 1.00 28.03 O
TER
ATOM 1 O3' A B 32 -11.950 -18.667 35.332 1.00 30.04 O
ATOM 2 P A B 33 -11.372 -20.153 35.135 1.00 32.32 P
ATOM 3 OP1 A B 33 -12.497 -21.091 35.375 1.00 36.30 O
ATOM 4 OP2 A B 33 -10.156 -20.269 35.977 1.00 26.67 O
ATOM 5 O5' A B 33 -10.971 -20.173 33.597 1.00 28.91 O
ATOM 6 C5' A B 33 -11.943 -19.943 32.588 1.00 28.66 C
ATOM 7 C4' A B 33 -11.316 -19.909 31.220 1.00 28.19 C
ATOM 8 O4' A B 33 -10.498 -18.718 31.083 1.00 29.04 O
ATOM 9 C3' A B 33 -10.362 -21.047 30.899 1.00 30.30 C
ATOM 10 O3' A B 33 -11.026 -22.238 30.513 1.00 27.15 O
ATOM 11 C2' A B 33 -9.490 -20.446 29.806 1.00 28.78 C
ATOM 12 O2' A B 33 -10.176 -20.442 28.563 1.00 30.69 O
ATOM 13 C1' A B 33 -9.364 -19.001 30.290 1.00 28.05 C
ATOM 14 N9 A B 33 -8.157 -18.800 31.115 1.00 28.83 N
ATOM 15 C8 A B 33 -8.045 -18.911 32.479 1.00 27.93 C
ATOM 16 N7 A B 33 -6.839 -18.673 32.931 1.00 25.82 N
ATOM 17 C5 A B 33 -6.105 -18.387 31.787 1.00 27.72 C
ATOM 18 C6 A B 33 -4.756 -18.050 31.586 1.00 24.62 C
ATOM 19 N6 A B 33 -3.863 -17.938 32.569 1.00 21.89 N
ATOM 20 N1 A B 33 -4.347 -17.826 30.319 1.00 27.06 N
ATOM 21 C2 A B 33 -5.237 -17.935 29.326 1.00 26.51 C
ATOM 22 N3 A B 33 -6.529 -18.245 29.390 1.00 29.43 N
ATOM 23 C4 A B 33 -6.905 -18.460 30.662 1.00 28.16 C
ATOM 24 P U B 34 -10.203 -23.609 30.378 1.00 36.17 P
ATOM 25 OP1 U B 34 -11.180 -24.676 30.039 1.00 38.08 O
ATOM 26 OP2 U B 34 -9.388 -23.754 31.606 1.00 29.77 O
ATOM 27 O5' U B 34 -9.260 -23.321 29.132 1.00 30.74 O
TER
Atoms:
OP1: (5.246,-10.663,29.981)
OP2: (3.740,-11.919,31.617)
C3': (2.583,-13.396,26.828)
C1': (2.639,-15.687,27.307)
C5': (4.784,-12.946,28.061)
O6: (-1.354,-16.866,31.635)
O4': (3.912,-15.159,27.612)
C8: (2.280,-15.456,29.827)
C2: (-1.257,-17.380,28.121)
C6: (-0.900,-16.837,30.487)
C5: (0.346,-16.325,30.039)
C4: (0.643,-16.402,28.696)
P: (4.691,-11.947,30.478)
C4': (4.023,-13.806,27.089)
C2': (1.952,-14.698,26.372)
O2': (2.339,-15.001,25.040)
N1: (-1.650,-17.354,29.437)
N2: (-2.120,-17.922,27.249)
N3: (-0.102,-16.908,27.692)
N7: (1.387,-15.726,30.740)
N9: (1.892,-15.847,28.568)
O5': (4.063,-12.769,29.270)
O3': (2.466,-12.345,25.890)
OP2: (3.740,-11.919,31.617)
C3': (2.583,-13.396,26.828)
C1': (2.639,-15.687,27.307)
C5': (4.784,-12.946,28.061)
O6: (-1.354,-16.866,31.635)
O4': (3.912,-15.159,27.612)
C8: (2.280,-15.456,29.827)
C2: (-1.257,-17.380,28.121)
C6: (-0.900,-16.837,30.487)
C5: (0.346,-16.325,30.039)
C4: (0.643,-16.402,28.696)
P: (4.691,-11.947,30.478)
C4': (4.023,-13.806,27.089)
C2': (1.952,-14.698,26.372)
O2': (2.339,-15.001,25.040)
N1: (-1.650,-17.354,29.437)
N2: (-2.120,-17.922,27.249)
N3: (-0.102,-16.908,27.692)
N7: (1.387,-15.726,30.740)
N9: (1.892,-15.847,28.568)
O5': (4.063,-12.769,29.270)
O3': (2.466,-12.345,25.890)
OP1: (-12.497,-21.091,35.375)
OP2: (-10.156,-20.269,35.977)
C3': (-10.362,-21.047,30.899)
C1': (-9.364,-19.001,30.290)
C5': (-11.943,-19.943,32.588)
O4': (-10.498,-18.718,31.083)
C8: (-8.045,-18.911,32.479)
O2': (-10.176,-20.442,28.563)
C6: (-4.756,-18.050,31.586)
C5: (-6.105,-18.387,31.787)
C4: (-6.905,-18.460,30.662)
P: (-11.372,-20.153,35.135)
C4': (-11.316,-19.909,31.220)
C2': (-9.490,-20.446,29.806)
C2: (-5.237,-17.935,29.326)
N1: (-4.347,-17.826,30.319)
N3: (-6.529,-18.245,29.390)
N6: (-3.863,-17.938,32.569)
N7: (-6.839,-18.673,32.931)
N9: (-8.157,-18.800,31.115)
O5': (-10.971,-20.173,33.597)
O3': (-11.026,-22.238,30.513)
OP2: (-10.156,-20.269,35.977)
C3': (-10.362,-21.047,30.899)
C1': (-9.364,-19.001,30.290)
C5': (-11.943,-19.943,32.588)
O4': (-10.498,-18.718,31.083)
C8: (-8.045,-18.911,32.479)
O2': (-10.176,-20.442,28.563)
C6: (-4.756,-18.050,31.586)
C5: (-6.105,-18.387,31.787)
C4: (-6.905,-18.460,30.662)
P: (-11.372,-20.153,35.135)
C4': (-11.316,-19.909,31.220)
C2': (-9.490,-20.446,29.806)
C2: (-5.237,-17.935,29.326)
N1: (-4.347,-17.826,30.319)
N3: (-6.529,-18.245,29.390)
N6: (-3.863,-17.938,32.569)
N7: (-6.839,-18.673,32.931)
N9: (-8.157,-18.800,31.115)
O5': (-10.971,-20.173,33.597)
O3': (-11.026,-22.238,30.513)
Image (generated by PyMOL):