ClaRNA

Doublet info:

Details

Nucleotide types: GA
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 3DIQ:A140:A161

Extra

PDB:
ATOM 1 O3' U A 139 42.762 18.397 22.214 1.00 17.02 O
ATOM 2 P G A 140 43.600 17.061 21.926 1.00 17.18 P
ATOM 3 OP1 G A 140 44.352 16.776 23.171 1.00 17.73 O
ATOM 4 OP2 G A 140 44.313 17.159 20.635 1.00 17.06 O
ATOM 5 O5' G A 140 42.445 15.976 21.755 1.00 16.30 O
ATOM 6 C5' G A 140 41.512 15.768 22.812 1.00 14.99 C
ATOM 7 C4' G A 140 40.218 15.200 22.268 1.00 14.33 C
ATOM 8 O4' G A 140 39.595 16.156 21.375 1.00 13.70 O
ATOM 9 C3' G A 140 40.379 13.974 21.384 1.00 13.67 C
ATOM 10 O3' G A 140 40.646 12.804 22.149 1.00 12.93 O
ATOM 11 C2' G A 140 39.035 13.972 20.668 1.00 13.47 C
ATOM 12 O2' G A 140 37.961 13.562 21.477 1.00 14.55 O
ATOM 13 C1' G A 140 38.876 15.458 20.378 1.00 13.49 C
ATOM 14 N9 G A 140 39.371 15.827 19.051 1.00 13.30 N
ATOM 15 C8 G A 140 40.566 16.424 18.733 1.00 13.02 C
ATOM 16 N7 G A 140 40.723 16.619 17.454 1.00 13.49 N
ATOM 17 C5 G A 140 39.553 16.119 16.885 1.00 13.56 C
ATOM 18 C6 G A 140 39.140 16.046 15.527 1.00 13.09 C
ATOM 19 O6 G A 140 39.753 16.436 14.529 1.00 13.58 O
ATOM 20 N1 G A 140 37.887 15.453 15.375 1.00 12.79 N
ATOM 21 C2 G A 140 37.123 14.989 16.424 1.00 13.14 C
ATOM 22 N2 G A 140 35.936 14.444 16.121 1.00 13.08 N
ATOM 23 N3 G A 140 37.496 15.054 17.697 1.00 13.07 N
ATOM 24 C4 G A 140 38.716 15.625 17.857 1.00 13.12 C
ATOM 25 P U A 141 41.678 11.729 21.569 1.00 12.58 P
ATOM 26 OP1 U A 141 41.971 10.726 22.618 1.00 12.62 O
ATOM 27 OP2 U A 141 42.785 12.438 20.895 1.00 12.67 O
ATOM 28 O5' U A 141 40.817 11.042 20.418 1.00 13.34 O
TER

ATOM 1 O3' G B 160 35.460 13.182 4.580 1.00 25.32 O
ATOM 2 P A B 161 34.240 14.189 4.860 1.00 26.63 P
ATOM 3 OP1 A B 161 33.340 14.140 3.680 1.00 25.83 O
ATOM 4 OP2 A B 161 34.765 15.491 5.349 1.00 25.24 O
ATOM 5 O5' A B 161 33.504 13.477 6.088 1.00 25.56 O
ATOM 6 C5' A B 161 33.051 12.129 5.967 1.00 24.20 C
ATOM 7 C4' A B 161 32.935 11.494 7.343 1.00 23.14 C
ATOM 8 O4' A B 161 34.030 11.920 8.196 1.00 22.29 O
ATOM 9 C3' A B 161 31.670 11.842 8.118 1.00 22.59 C
ATOM 10 O3' A B 161 31.279 10.683 8.853 1.00 21.97 O
ATOM 11 C2' A B 161 32.136 13.010 8.994 1.00 22.08 C
ATOM 12 O2' A B 161 31.326 13.226 10.133 1.00 22.23 O
ATOM 13 C1' A B 161 33.526 12.514 9.374 1.00 21.46 C
ATOM 14 N9 A B 161 34.494 13.529 9.781 1.00 21.41 N
ATOM 15 C8 A B 161 34.984 14.561 9.025 1.00 21.73 C
ATOM 16 N7 A B 161 35.860 15.314 9.649 1.00 21.20 N
ATOM 17 C5 A B 161 35.955 14.732 10.902 1.00 20.64 C
ATOM 18 C6 A B 161 36.717 15.054 12.042 1.00 20.12 C
ATOM 19 N6 A B 161 37.563 16.083 12.099 1.00 19.66 N
ATOM 20 N1 A B 161 36.577 14.263 13.127 1.00 21.11 N
ATOM 21 C2 A B 161 35.731 13.219 13.079 1.00 20.61 C
ATOM 22 N3 A B 161 34.965 12.821 12.066 1.00 20.46 N
ATOM 23 C4 A B 161 35.125 13.625 11.000 1.00 20.81 C
ATOM 24 P G B 162 29.738 10.292 9.037 1.00 21.61 P
ATOM 25 OP1 G B 162 29.467 9.055 8.264 1.00 20.85 O
ATOM 26 OP2 G B 162 28.910 11.507 8.821 1.00 21.25 O
ATOM 27 O5' G B 162 29.691 9.869 10.581 1.00 19.31 O
TER

Atoms:
OP1: (44.352,16.776,23.171)
OP2: (44.313,17.159,20.635)
C3': (40.379,13.974,21.384)
C1': (38.876,15.458,20.378)
C5': (41.512,15.768,22.812)
O6: (39.753,16.436,14.529)
O4': (39.595,16.156,21.375)
C8: (40.566,16.424,18.733)
C2: (37.123,14.989,16.424)
C6: (39.140,16.046,15.527)
C5: (39.553,16.119,16.885)
C4: (38.716,15.625,17.857)
P: (43.600,17.061,21.926)
C4': (40.218,15.200,22.268)
C2': (39.035,13.972,20.668)
O2': (37.961,13.562,21.477)
N1: (37.887,15.453,15.375)
N2: (35.936,14.444,16.121)
N3: (37.496,15.054,17.697)
N7: (40.723,16.619,17.454)
N9: (39.371,15.827,19.051)
O5': (42.445,15.976,21.755)
O3': (40.646,12.804,22.149)
OP1: (33.340,14.140,3.680)
OP2: (34.765,15.491,5.349)
C3': (31.670,11.842,8.118)
C1': (33.526,12.514,9.374)
C5': (33.051,12.129,5.967)
O4': (34.030,11.920,8.196)
C8: (34.984,14.561,9.025)
O2': (31.326,13.226,10.133)
C6: (36.717,15.054,12.042)
C5: (35.955,14.732,10.902)
C4: (35.125,13.625,11.000)
P: (34.240,14.189,4.860)
C4': (32.935,11.494,7.343)
C2': (32.136,13.010,8.994)
C2: (35.731,13.219,13.079)
N1: (36.577,14.263,13.127)
N3: (34.965,12.821,12.066)
N6: (37.563,16.083,12.099)
N7: (35.860,15.314,9.649)
N9: (34.494,13.529,9.781)
O5': (33.504,13.477,6.088)
O3': (31.279,10.683,8.853)
Image (generated by PyMOL):
PyMOL image
show in jmol