Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12472:12488
Extra
PDB:
ATOM 1 O3' U A2471 42.828 -64.206 69.087 1.00 64.15 O
ATOM 2 P G A2472 43.039 -62.856 68.214 1.00 54.58 P
ATOM 3 OP1 G A2472 43.598 -61.843 69.161 1.00 54.26 O
ATOM 4 OP2 G A2472 41.752 -62.547 67.487 1.00 54.45 O
ATOM 5 O5' G A2472 44.144 -63.279 67.140 1.00 54.76 O
ATOM 6 C5' G A2472 44.428 -62.449 66.030 1.00 54.49 C
ATOM 7 C4' G A2472 45.250 -63.175 65.016 1.00 54.78 C
ATOM 8 O4' G A2472 44.658 -64.464 64.771 1.00 55.22 O
ATOM 9 C3' G A2472 45.334 -62.530 63.642 1.00 54.60 C
ATOM 10 O3' G A2472 46.307 -61.524 63.568 1.00 54.29 O
ATOM 11 C2' G A2472 45.600 -63.716 62.724 1.00 55.04 C
ATOM 12 O2' G A2472 46.971 -64.109 62.757 1.00 55.22 O
ATOM 13 C1' G A2472 44.759 -64.797 63.402 1.00 55.37 C
ATOM 14 N9 G A2472 43.401 -64.837 62.860 1.00 55.37 N
ATOM 15 C8 G A2472 42.280 -64.589 63.597 1.00 55.24 C
ATOM 16 N7 G A2472 41.205 -64.639 62.871 1.00 55.27 N
ATOM 17 C5 G A2472 41.657 -64.933 61.596 1.00 55.43 C
ATOM 18 C6 G A2472 40.932 -65.132 60.395 1.00 55.55 C
ATOM 19 O6 G A2472 39.702 -65.067 60.236 1.00 55.53 O
ATOM 20 N1 G A2472 41.797 -65.413 59.346 1.00 55.71 N
ATOM 21 C2 G A2472 43.150 -65.491 59.467 1.00 55.76 C
ATOM 22 N2 G A2472 43.839 -65.761 58.372 1.00 55.93 N
ATOM 23 N3 G A2472 43.819 -65.317 60.565 1.00 55.65 N
ATOM 24 C4 G A2472 43.019 -65.051 61.581 1.00 55.49 C
ATOM 25 P A A2473 45.935 -60.093 62.955 1.00 52.68 P
ATOM 26 OP1 A A2473 46.992 -59.122 63.392 1.00 52.39 O
ATOM 27 OP2 A A2473 44.536 -59.807 63.310 1.00 52.53 O
ATOM 28 O5' A A2473 46.069 -60.380 61.395 1.00 52.83 O
TER
ATOM 1 O3' U B2487 35.017 -63.485 49.837 1.00 48.03 O
ATOM 2 P A B2488 34.709 -65.017 50.102 1.00 45.49 P
ATOM 3 OP1 A B2488 34.055 -65.527 48.880 1.00 45.85 O
ATOM 4 OP2 A B2488 34.005 -65.120 51.375 1.00 45.40 O
ATOM 5 O5' A B2488 36.152 -65.633 50.256 1.00 45.66 O
ATOM 6 C5' A B2488 37.068 -65.571 49.199 1.00 45.75 C
ATOM 7 C4' A B2488 38.446 -65.907 49.669 1.00 45.79 C
ATOM 8 O4' A B2488 38.882 -64.930 50.626 1.00 45.32 O
ATOM 9 C3' A B2488 38.599 -67.220 50.406 1.00 46.19 C
ATOM 10 O3' A B2488 38.659 -68.330 49.535 1.00 46.71 O
ATOM 11 C2' A B2488 39.882 -67.006 51.163 1.00 46.01 C
ATOM 12 O2' A B2488 40.978 -67.177 50.286 1.00 46.18 O
ATOM 13 C1' A B2488 39.769 -65.524 51.534 1.00 45.43 C
ATOM 14 N9 A B2488 39.233 -65.331 52.895 1.00 45.22 N
ATOM 15 C8 A B2488 37.959 -65.014 53.281 1.00 45.08 C
ATOM 16 N7 A B2488 37.784 -64.908 54.584 1.00 44.92 N
ATOM 17 C5 A B2488 39.039 -65.191 55.095 1.00 44.96 C
ATOM 18 C6 A B2488 39.531 -65.252 56.420 1.00 44.87 C
ATOM 19 N6 A B2488 38.785 -65.025 57.496 1.00 44.71 N
ATOM 20 N1 A B2488 40.836 -65.522 56.583 1.00 44.96 N
ATOM 21 C2 A B2488 41.561 -65.736 55.483 1.00 45.13 C
ATOM 22 N3 A B2488 41.237 -65.730 54.191 1.00 45.24 N
ATOM 23 C4 A B2488 39.941 -65.431 54.064 1.00 45.14 C
ATOM 24 P C B2489 38.372 -69.786 50.107 1.00 50.67 P
ATOM 25 OP1 C B2489 38.294 -70.715 48.944 1.00 51.18 O
ATOM 26 OP2 C B2489 37.209 -69.666 51.022 1.00 50.53 O
ATOM 27 O5' C B2489 39.679 -70.071 50.941 1.00 50.67 O
TER
ATOM 2 P G A2472 43.039 -62.856 68.214 1.00 54.58 P
ATOM 3 OP1 G A2472 43.598 -61.843 69.161 1.00 54.26 O
ATOM 4 OP2 G A2472 41.752 -62.547 67.487 1.00 54.45 O
ATOM 5 O5' G A2472 44.144 -63.279 67.140 1.00 54.76 O
ATOM 6 C5' G A2472 44.428 -62.449 66.030 1.00 54.49 C
ATOM 7 C4' G A2472 45.250 -63.175 65.016 1.00 54.78 C
ATOM 8 O4' G A2472 44.658 -64.464 64.771 1.00 55.22 O
ATOM 9 C3' G A2472 45.334 -62.530 63.642 1.00 54.60 C
ATOM 10 O3' G A2472 46.307 -61.524 63.568 1.00 54.29 O
ATOM 11 C2' G A2472 45.600 -63.716 62.724 1.00 55.04 C
ATOM 12 O2' G A2472 46.971 -64.109 62.757 1.00 55.22 O
ATOM 13 C1' G A2472 44.759 -64.797 63.402 1.00 55.37 C
ATOM 14 N9 G A2472 43.401 -64.837 62.860 1.00 55.37 N
ATOM 15 C8 G A2472 42.280 -64.589 63.597 1.00 55.24 C
ATOM 16 N7 G A2472 41.205 -64.639 62.871 1.00 55.27 N
ATOM 17 C5 G A2472 41.657 -64.933 61.596 1.00 55.43 C
ATOM 18 C6 G A2472 40.932 -65.132 60.395 1.00 55.55 C
ATOM 19 O6 G A2472 39.702 -65.067 60.236 1.00 55.53 O
ATOM 20 N1 G A2472 41.797 -65.413 59.346 1.00 55.71 N
ATOM 21 C2 G A2472 43.150 -65.491 59.467 1.00 55.76 C
ATOM 22 N2 G A2472 43.839 -65.761 58.372 1.00 55.93 N
ATOM 23 N3 G A2472 43.819 -65.317 60.565 1.00 55.65 N
ATOM 24 C4 G A2472 43.019 -65.051 61.581 1.00 55.49 C
ATOM 25 P A A2473 45.935 -60.093 62.955 1.00 52.68 P
ATOM 26 OP1 A A2473 46.992 -59.122 63.392 1.00 52.39 O
ATOM 27 OP2 A A2473 44.536 -59.807 63.310 1.00 52.53 O
ATOM 28 O5' A A2473 46.069 -60.380 61.395 1.00 52.83 O
TER
ATOM 1 O3' U B2487 35.017 -63.485 49.837 1.00 48.03 O
ATOM 2 P A B2488 34.709 -65.017 50.102 1.00 45.49 P
ATOM 3 OP1 A B2488 34.055 -65.527 48.880 1.00 45.85 O
ATOM 4 OP2 A B2488 34.005 -65.120 51.375 1.00 45.40 O
ATOM 5 O5' A B2488 36.152 -65.633 50.256 1.00 45.66 O
ATOM 6 C5' A B2488 37.068 -65.571 49.199 1.00 45.75 C
ATOM 7 C4' A B2488 38.446 -65.907 49.669 1.00 45.79 C
ATOM 8 O4' A B2488 38.882 -64.930 50.626 1.00 45.32 O
ATOM 9 C3' A B2488 38.599 -67.220 50.406 1.00 46.19 C
ATOM 10 O3' A B2488 38.659 -68.330 49.535 1.00 46.71 O
ATOM 11 C2' A B2488 39.882 -67.006 51.163 1.00 46.01 C
ATOM 12 O2' A B2488 40.978 -67.177 50.286 1.00 46.18 O
ATOM 13 C1' A B2488 39.769 -65.524 51.534 1.00 45.43 C
ATOM 14 N9 A B2488 39.233 -65.331 52.895 1.00 45.22 N
ATOM 15 C8 A B2488 37.959 -65.014 53.281 1.00 45.08 C
ATOM 16 N7 A B2488 37.784 -64.908 54.584 1.00 44.92 N
ATOM 17 C5 A B2488 39.039 -65.191 55.095 1.00 44.96 C
ATOM 18 C6 A B2488 39.531 -65.252 56.420 1.00 44.87 C
ATOM 19 N6 A B2488 38.785 -65.025 57.496 1.00 44.71 N
ATOM 20 N1 A B2488 40.836 -65.522 56.583 1.00 44.96 N
ATOM 21 C2 A B2488 41.561 -65.736 55.483 1.00 45.13 C
ATOM 22 N3 A B2488 41.237 -65.730 54.191 1.00 45.24 N
ATOM 23 C4 A B2488 39.941 -65.431 54.064 1.00 45.14 C
ATOM 24 P C B2489 38.372 -69.786 50.107 1.00 50.67 P
ATOM 25 OP1 C B2489 38.294 -70.715 48.944 1.00 51.18 O
ATOM 26 OP2 C B2489 37.209 -69.666 51.022 1.00 50.53 O
ATOM 27 O5' C B2489 39.679 -70.071 50.941 1.00 50.67 O
TER
Atoms:
OP1: (43.598,-61.843,69.161)
OP2: (41.752,-62.547,67.487)
C3': (45.334,-62.530,63.642)
C1': (44.759,-64.797,63.402)
C5': (44.428,-62.449,66.030)
O6: (39.702,-65.067,60.236)
O4': (44.658,-64.464,64.771)
C8: (42.280,-64.589,63.597)
C2: (43.150,-65.491,59.467)
C6: (40.932,-65.132,60.395)
C5: (41.657,-64.933,61.596)
C4: (43.019,-65.051,61.581)
P: (43.039,-62.856,68.214)
C4': (45.250,-63.175,65.016)
C2': (45.600,-63.716,62.724)
O2': (46.971,-64.109,62.757)
N1: (41.797,-65.413,59.346)
N2: (43.839,-65.761,58.372)
N3: (43.819,-65.317,60.565)
N7: (41.205,-64.639,62.871)
N9: (43.401,-64.837,62.860)
O5': (44.144,-63.279,67.140)
O3': (46.307,-61.524,63.568)
OP2: (41.752,-62.547,67.487)
C3': (45.334,-62.530,63.642)
C1': (44.759,-64.797,63.402)
C5': (44.428,-62.449,66.030)
O6: (39.702,-65.067,60.236)
O4': (44.658,-64.464,64.771)
C8: (42.280,-64.589,63.597)
C2: (43.150,-65.491,59.467)
C6: (40.932,-65.132,60.395)
C5: (41.657,-64.933,61.596)
C4: (43.019,-65.051,61.581)
P: (43.039,-62.856,68.214)
C4': (45.250,-63.175,65.016)
C2': (45.600,-63.716,62.724)
O2': (46.971,-64.109,62.757)
N1: (41.797,-65.413,59.346)
N2: (43.839,-65.761,58.372)
N3: (43.819,-65.317,60.565)
N7: (41.205,-64.639,62.871)
N9: (43.401,-64.837,62.860)
O5': (44.144,-63.279,67.140)
O3': (46.307,-61.524,63.568)
OP1: (34.055,-65.527,48.880)
OP2: (34.005,-65.120,51.375)
C3': (38.599,-67.220,50.406)
C1': (39.769,-65.524,51.534)
C5': (37.068,-65.571,49.199)
O4': (38.882,-64.930,50.626)
C8: (37.959,-65.014,53.281)
O2': (40.978,-67.177,50.286)
C6: (39.531,-65.252,56.420)
C5: (39.039,-65.191,55.095)
C4: (39.941,-65.431,54.064)
P: (34.709,-65.017,50.102)
C4': (38.446,-65.907,49.669)
C2': (39.882,-67.006,51.163)
C2: (41.561,-65.736,55.483)
N1: (40.836,-65.522,56.583)
N3: (41.237,-65.730,54.191)
N6: (38.785,-65.025,57.496)
N7: (37.784,-64.908,54.584)
N9: (39.233,-65.331,52.895)
O5': (36.152,-65.633,50.256)
O3': (38.659,-68.330,49.535)
OP2: (34.005,-65.120,51.375)
C3': (38.599,-67.220,50.406)
C1': (39.769,-65.524,51.534)
C5': (37.068,-65.571,49.199)
O4': (38.882,-64.930,50.626)
C8: (37.959,-65.014,53.281)
O2': (40.978,-67.177,50.286)
C6: (39.531,-65.252,56.420)
C5: (39.039,-65.191,55.095)
C4: (39.941,-65.431,54.064)
P: (34.709,-65.017,50.102)
C4': (38.446,-65.907,49.669)
C2': (39.882,-67.006,51.163)
C2: (41.561,-65.736,55.483)
N1: (40.836,-65.522,56.583)
N3: (41.237,-65.730,54.191)
N6: (38.785,-65.025,57.496)
N7: (37.784,-64.908,54.584)
N9: (39.233,-65.331,52.895)
O5': (36.152,-65.633,50.256)
O3': (38.659,-68.330,49.535)
Image (generated by PyMOL):