Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3D2V:A41:A39
Extra
PDB:
ATOM 1 O3' U A 40 -10.372 -3.279 -13.932 1.00 35.57 O
ATOM 2 P G A 41 -9.385 -2.285 -13.157 1.00 29.92 P
ATOM 3 OP1 G A 41 -8.142 -2.187 -13.953 1.00 35.84 O
ATOM 4 OP2 G A 41 -9.336 -2.683 -11.732 1.00 30.04 O
ATOM 5 O5' G A 41 -10.155 -0.886 -13.251 1.00 34.05 O
ATOM 6 C5' G A 41 -10.792 -0.466 -14.450 1.00 28.82 C
ATOM 7 C4' G A 41 -11.417 0.900 -14.223 1.00 26.14 C
ATOM 8 O4' G A 41 -12.518 0.794 -13.289 1.00 27.40 O
ATOM 9 C3' G A 41 -10.494 1.895 -13.546 1.00 28.19 C
ATOM 10 O3' G A 41 -9.655 2.484 -14.501 1.00 25.89 O
ATOM 11 C2' G A 41 -11.498 2.896 -12.996 1.00 24.02 C
ATOM 12 O2' G A 41 -12.074 3.691 -14.010 1.00 25.36 O
ATOM 13 C1' G A 41 -12.527 1.924 -12.434 1.00 24.76 C
ATOM 14 N9 G A 41 -12.191 1.506 -11.079 1.00 24.99 N
ATOM 15 C8 G A 41 -11.496 0.386 -10.689 1.00 29.61 C
ATOM 16 N7 G A 41 -11.352 0.292 -9.396 1.00 28.72 N
ATOM 17 C5 G A 41 -11.987 1.421 -8.897 1.00 25.31 C
ATOM 18 C6 G A 41 -12.154 1.863 -7.565 1.00 25.60 C
ATOM 19 O6 G A 41 -11.761 1.325 -6.521 1.00 29.27 O
ATOM 20 N1 G A 41 -12.861 3.061 -7.505 1.00 30.10 N
ATOM 21 C2 G A 41 -13.343 3.746 -8.596 1.00 28.70 C
ATOM 22 N2 G A 41 -14.002 4.887 -8.346 1.00 27.26 N
ATOM 23 N3 G A 41 -13.191 3.342 -9.851 1.00 26.30 N
ATOM 24 C4 G A 41 -12.505 2.178 -9.921 1.00 27.80 C
ATOM 25 P A A 42 -8.305 3.183 -14.026 1.00 29.98 P
ATOM 26 OP1 A A 42 -7.243 2.164 -13.865 1.00 29.28 O
ATOM 27 OP2 A A 42 -8.602 4.126 -12.923 1.00 27.11 O
ATOM 28 O5' A A 42 -8.018 4.023 -15.334 1.00 31.18 O
TER
ATOM 1 O3' U B 38 -16.815 0.909 -13.479 1.00 27.02 O
ATOM 2 P U B 39 -17.253 -0.620 -13.689 1.00 31.88 P
ATOM 3 OP1 U B 39 -16.729 -1.060 -14.998 1.00 26.84 O
ATOM 4 OP2 U B 39 -18.697 -0.730 -13.386 1.00 35.39 O
ATOM 5 O5' U B 39 -16.441 -1.370 -12.540 1.00 30.64 O
ATOM 6 C5' U B 39 -15.024 -1.405 -12.555 1.00 32.52 C
ATOM 7 C4' U B 39 -14.524 -1.508 -11.127 1.00 34.44 C
ATOM 8 O4' U B 39 -14.577 -0.193 -10.515 1.00 33.14 O
ATOM 9 C3' U B 39 -15.353 -2.434 -10.240 1.00 36.43 C
ATOM 10 O3' U B 39 -14.519 -3.340 -9.517 1.00 40.97 O
ATOM 11 C2' U B 39 -16.099 -1.490 -9.302 1.00 37.13 C
ATOM 12 O2' U B 39 -16.270 -2.050 -8.015 1.00 41.66 O
ATOM 13 C1' U B 39 -15.160 -0.292 -9.235 1.00 32.01 C
ATOM 14 N1 U B 39 -15.863 0.982 -8.941 1.00 32.98 N
ATOM 15 C2 U B 39 -15.878 1.456 -7.647 1.00 31.71 C
ATOM 16 O2 U B 39 -15.334 0.878 -6.723 1.00 35.33 O
ATOM 17 N3 U B 39 -16.554 2.637 -7.475 1.00 31.57 N
ATOM 18 C4 U B 39 -17.205 3.371 -8.449 1.00 30.97 C
ATOM 19 O4 U B 39 -17.773 4.415 -8.148 1.00 35.02 O
ATOM 20 C5 U B 39 -17.145 2.810 -9.772 1.00 32.23 C
ATOM 21 C6 U B 39 -16.491 1.661 -9.964 1.00 30.10 C
ATOM 22 P U B 40 -14.375 -4.850 -10.026 1.00 41.85 P
ATOM 23 OP1 U B 40 -15.692 -5.290 -10.534 1.00 38.37 O
ATOM 24 OP2 U B 40 -13.693 -5.620 -8.963 1.00 49.96 O
ATOM 25 O5' U B 40 -13.394 -4.721 -11.279 1.00 39.63 O
TER
ATOM 2 P G A 41 -9.385 -2.285 -13.157 1.00 29.92 P
ATOM 3 OP1 G A 41 -8.142 -2.187 -13.953 1.00 35.84 O
ATOM 4 OP2 G A 41 -9.336 -2.683 -11.732 1.00 30.04 O
ATOM 5 O5' G A 41 -10.155 -0.886 -13.251 1.00 34.05 O
ATOM 6 C5' G A 41 -10.792 -0.466 -14.450 1.00 28.82 C
ATOM 7 C4' G A 41 -11.417 0.900 -14.223 1.00 26.14 C
ATOM 8 O4' G A 41 -12.518 0.794 -13.289 1.00 27.40 O
ATOM 9 C3' G A 41 -10.494 1.895 -13.546 1.00 28.19 C
ATOM 10 O3' G A 41 -9.655 2.484 -14.501 1.00 25.89 O
ATOM 11 C2' G A 41 -11.498 2.896 -12.996 1.00 24.02 C
ATOM 12 O2' G A 41 -12.074 3.691 -14.010 1.00 25.36 O
ATOM 13 C1' G A 41 -12.527 1.924 -12.434 1.00 24.76 C
ATOM 14 N9 G A 41 -12.191 1.506 -11.079 1.00 24.99 N
ATOM 15 C8 G A 41 -11.496 0.386 -10.689 1.00 29.61 C
ATOM 16 N7 G A 41 -11.352 0.292 -9.396 1.00 28.72 N
ATOM 17 C5 G A 41 -11.987 1.421 -8.897 1.00 25.31 C
ATOM 18 C6 G A 41 -12.154 1.863 -7.565 1.00 25.60 C
ATOM 19 O6 G A 41 -11.761 1.325 -6.521 1.00 29.27 O
ATOM 20 N1 G A 41 -12.861 3.061 -7.505 1.00 30.10 N
ATOM 21 C2 G A 41 -13.343 3.746 -8.596 1.00 28.70 C
ATOM 22 N2 G A 41 -14.002 4.887 -8.346 1.00 27.26 N
ATOM 23 N3 G A 41 -13.191 3.342 -9.851 1.00 26.30 N
ATOM 24 C4 G A 41 -12.505 2.178 -9.921 1.00 27.80 C
ATOM 25 P A A 42 -8.305 3.183 -14.026 1.00 29.98 P
ATOM 26 OP1 A A 42 -7.243 2.164 -13.865 1.00 29.28 O
ATOM 27 OP2 A A 42 -8.602 4.126 -12.923 1.00 27.11 O
ATOM 28 O5' A A 42 -8.018 4.023 -15.334 1.00 31.18 O
TER
ATOM 1 O3' U B 38 -16.815 0.909 -13.479 1.00 27.02 O
ATOM 2 P U B 39 -17.253 -0.620 -13.689 1.00 31.88 P
ATOM 3 OP1 U B 39 -16.729 -1.060 -14.998 1.00 26.84 O
ATOM 4 OP2 U B 39 -18.697 -0.730 -13.386 1.00 35.39 O
ATOM 5 O5' U B 39 -16.441 -1.370 -12.540 1.00 30.64 O
ATOM 6 C5' U B 39 -15.024 -1.405 -12.555 1.00 32.52 C
ATOM 7 C4' U B 39 -14.524 -1.508 -11.127 1.00 34.44 C
ATOM 8 O4' U B 39 -14.577 -0.193 -10.515 1.00 33.14 O
ATOM 9 C3' U B 39 -15.353 -2.434 -10.240 1.00 36.43 C
ATOM 10 O3' U B 39 -14.519 -3.340 -9.517 1.00 40.97 O
ATOM 11 C2' U B 39 -16.099 -1.490 -9.302 1.00 37.13 C
ATOM 12 O2' U B 39 -16.270 -2.050 -8.015 1.00 41.66 O
ATOM 13 C1' U B 39 -15.160 -0.292 -9.235 1.00 32.01 C
ATOM 14 N1 U B 39 -15.863 0.982 -8.941 1.00 32.98 N
ATOM 15 C2 U B 39 -15.878 1.456 -7.647 1.00 31.71 C
ATOM 16 O2 U B 39 -15.334 0.878 -6.723 1.00 35.33 O
ATOM 17 N3 U B 39 -16.554 2.637 -7.475 1.00 31.57 N
ATOM 18 C4 U B 39 -17.205 3.371 -8.449 1.00 30.97 C
ATOM 19 O4 U B 39 -17.773 4.415 -8.148 1.00 35.02 O
ATOM 20 C5 U B 39 -17.145 2.810 -9.772 1.00 32.23 C
ATOM 21 C6 U B 39 -16.491 1.661 -9.964 1.00 30.10 C
ATOM 22 P U B 40 -14.375 -4.850 -10.026 1.00 41.85 P
ATOM 23 OP1 U B 40 -15.692 -5.290 -10.534 1.00 38.37 O
ATOM 24 OP2 U B 40 -13.693 -5.620 -8.963 1.00 49.96 O
ATOM 25 O5' U B 40 -13.394 -4.721 -11.279 1.00 39.63 O
TER
Atoms:
OP1: (-8.142,-2.187,-13.953)
OP2: (-9.336,-2.683,-11.732)
C3': (-10.494,1.895,-13.546)
C1': (-12.527,1.924,-12.434)
C5': (-10.792,-0.466,-14.450)
O6: (-11.761,1.325,-6.521)
O4': (-12.518,0.794,-13.289)
C8: (-11.496,0.386,-10.689)
C2: (-13.343,3.746,-8.596)
C6: (-12.154,1.863,-7.565)
C5: (-11.987,1.421,-8.897)
C4: (-12.505,2.178,-9.921)
P: (-9.385,-2.285,-13.157)
C4': (-11.417,0.900,-14.223)
C2': (-11.498,2.896,-12.996)
O2': (-12.074,3.691,-14.010)
N1: (-12.861,3.061,-7.505)
N2: (-14.002,4.887,-8.346)
N3: (-13.191,3.342,-9.851)
N7: (-11.352,0.292,-9.396)
N9: (-12.191,1.506,-11.079)
O5': (-10.155,-0.886,-13.251)
O3': (-9.655,2.484,-14.501)
OP2: (-9.336,-2.683,-11.732)
C3': (-10.494,1.895,-13.546)
C1': (-12.527,1.924,-12.434)
C5': (-10.792,-0.466,-14.450)
O6: (-11.761,1.325,-6.521)
O4': (-12.518,0.794,-13.289)
C8: (-11.496,0.386,-10.689)
C2: (-13.343,3.746,-8.596)
C6: (-12.154,1.863,-7.565)
C5: (-11.987,1.421,-8.897)
C4: (-12.505,2.178,-9.921)
P: (-9.385,-2.285,-13.157)
C4': (-11.417,0.900,-14.223)
C2': (-11.498,2.896,-12.996)
O2': (-12.074,3.691,-14.010)
N1: (-12.861,3.061,-7.505)
N2: (-14.002,4.887,-8.346)
N3: (-13.191,3.342,-9.851)
N7: (-11.352,0.292,-9.396)
N9: (-12.191,1.506,-11.079)
O5': (-10.155,-0.886,-13.251)
O3': (-9.655,2.484,-14.501)
C4: (-17.205,3.371,-8.449)
N3: (-16.554,2.637,-7.475)
OP1: (-16.729,-1.060,-14.998)
OP2: (-18.697,-0.730,-13.386)
C2: (-15.878,1.456,-7.647)
C1': (-15.160,-0.292,-9.235)
C3': (-15.353,-2.434,-10.240)
O5': (-16.441,-1.370,-12.540)
O4': (-14.577,-0.193,-10.515)
C5': (-15.024,-1.405,-12.555)
P: (-17.253,-0.620,-13.689)
C4': (-14.524,-1.508,-11.127)
C2': (-16.099,-1.490,-9.302)
O2': (-16.270,-2.050,-8.015)
N1: (-15.863,0.982,-8.941)
O4: (-17.773,4.415,-8.148)
O2: (-15.334,0.878,-6.723)
C6: (-16.491,1.661,-9.964)
C5: (-17.145,2.810,-9.772)
O3': (-14.519,-3.340,-9.517)
N3: (-16.554,2.637,-7.475)
OP1: (-16.729,-1.060,-14.998)
OP2: (-18.697,-0.730,-13.386)
C2: (-15.878,1.456,-7.647)
C1': (-15.160,-0.292,-9.235)
C3': (-15.353,-2.434,-10.240)
O5': (-16.441,-1.370,-12.540)
O4': (-14.577,-0.193,-10.515)
C5': (-15.024,-1.405,-12.555)
P: (-17.253,-0.620,-13.689)
C4': (-14.524,-1.508,-11.127)
C2': (-16.099,-1.490,-9.302)
O2': (-16.270,-2.050,-8.015)
N1: (-15.863,0.982,-8.941)
O4: (-17.773,4.415,-8.148)
O2: (-15.334,0.878,-6.723)
C6: (-16.491,1.661,-9.964)
C5: (-17.145,2.810,-9.772)
O3': (-14.519,-3.340,-9.517)
Image (generated by PyMOL):