Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:11981:11983
Extra
PDB:
ATOM 1 O3' U A1980 7.082 -1.725 119.054 1.00 48.56 O
ATOM 2 P G A1981 6.311 -1.294 120.373 1.00 48.26 P
ATOM 3 OP1 G A1981 5.194 -2.248 120.548 1.00 48.39 O
ATOM 4 OP2 G A1981 5.999 0.142 120.234 1.00 48.37 O
ATOM 5 O5' G A1981 7.386 -1.509 121.512 1.00 48.48 O
ATOM 6 C5' G A1981 7.145 -1.020 122.827 1.00 48.99 C
ATOM 7 C4' G A1981 7.467 -2.047 123.884 1.00 49.23 C
ATOM 8 O4' G A1981 6.605 -3.213 123.726 1.00 49.20 O
ATOM 9 C3' G A1981 8.891 -2.573 123.878 1.00 49.03 C
ATOM 10 O3' G A1981 9.277 -2.806 125.220 1.00 49.44 O
ATOM 11 C2' G A1981 8.756 -3.909 123.149 1.00 48.70 C
ATOM 12 O2' G A1981 9.765 -4.839 123.436 1.00 48.63 O
ATOM 13 C1' G A1981 7.398 -4.388 123.646 1.00 49.00 C
ATOM 14 N9 G A1981 6.724 -5.353 122.746 1.00 48.72 N
ATOM 15 C8 G A1981 5.957 -5.058 121.630 1.00 48.46 C
ATOM 16 N7 G A1981 5.471 -6.077 120.971 1.00 48.26 N
ATOM 17 C5 G A1981 5.943 -7.130 121.687 1.00 48.38 C
ATOM 18 C6 G A1981 5.715 -8.492 121.448 1.00 48.28 C
ATOM 19 O6 G A1981 5.085 -9.010 120.538 1.00 48.05 O
ATOM 20 N1 G A1981 6.316 -9.268 122.411 1.00 48.50 N
ATOM 21 C2 G A1981 7.039 -8.757 123.434 1.00 48.77 C
ATOM 22 N2 G A1981 7.517 -9.684 124.217 1.00 48.96 N
ATOM 23 N3 G A1981 7.273 -7.492 123.694 1.00 48.88 N
ATOM 24 C4 G A1981 6.696 -6.723 122.777 1.00 48.67 C
ATOM 25 P U A1982 9.919 -1.631 126.113 1.00 48.05 P
ATOM 26 OP1 U A1982 10.525 -0.651 125.199 1.00 47.73 O
ATOM 27 OP2 U A1982 10.765 -2.304 127.098 1.00 48.27 O
ATOM 28 O5' U A1982 8.689 -0.970 126.847 1.00 48.50 O
TER
ATOM 1 O3' U B1982 4.654 0.008 128.311 1.00 49.62 O
ATOM 2 P U B1983 3.591 -1.139 128.449 1.00 53.19 P
ATOM 3 OP1 U B1983 2.357 -0.539 128.977 1.00 53.61 O
ATOM 4 OP2 U B1983 4.233 -2.242 129.202 1.00 53.30 O
ATOM 5 O5' U B1983 3.374 -1.557 126.949 1.00 52.63 O
ATOM 6 C5' U B1983 2.905 -0.622 126.003 1.00 52.43 C
ATOM 7 C4' U B1983 2.660 -1.281 124.681 1.00 51.95 C
ATOM 8 O4' U B1983 3.780 -2.128 124.332 1.00 51.61 O
ATOM 9 C3' U B1983 1.473 -2.198 124.634 1.00 52.03 C
ATOM 10 O3' U B1983 0.300 -1.475 124.401 1.00 52.18 O
ATOM 11 C2' U B1983 1.821 -3.128 123.494 1.00 51.52 C
ATOM 12 O2' U B1983 1.552 -2.485 122.248 1.00 51.19 O
ATOM 13 C1' U B1983 3.332 -3.256 123.646 1.00 51.35 C
ATOM 14 N1 U B1983 3.757 -4.466 124.410 1.00 51.48 N
ATOM 15 C2 U B1983 3.546 -5.786 123.956 1.00 51.28 C
ATOM 16 O2 U B1983 2.952 -6.159 122.963 1.00 51.00 O
ATOM 17 N3 U B1983 4.044 -6.771 124.736 1.00 51.43 N
ATOM 18 C4 U B1983 4.736 -6.601 125.894 1.00 51.75 C
ATOM 19 O4 U B1983 5.096 -7.634 126.460 1.00 51.86 O
ATOM 20 C5 U B1983 4.937 -5.246 126.312 1.00 51.95 C
ATOM 21 C6 U B1983 4.460 -4.255 125.571 1.00 51.80 C
ATOM 22 P G B1984 -1.067 -1.850 125.130 1.00 54.24 P
ATOM 23 OP1 G B1984 -2.044 -0.833 124.685 1.00 54.33 O
ATOM 24 OP2 G B1984 -0.784 -1.997 126.568 1.00 54.69 O
ATOM 25 O5' G B1984 -1.431 -3.258 124.513 1.00 53.98 O
TER
ATOM 2 P G A1981 6.311 -1.294 120.373 1.00 48.26 P
ATOM 3 OP1 G A1981 5.194 -2.248 120.548 1.00 48.39 O
ATOM 4 OP2 G A1981 5.999 0.142 120.234 1.00 48.37 O
ATOM 5 O5' G A1981 7.386 -1.509 121.512 1.00 48.48 O
ATOM 6 C5' G A1981 7.145 -1.020 122.827 1.00 48.99 C
ATOM 7 C4' G A1981 7.467 -2.047 123.884 1.00 49.23 C
ATOM 8 O4' G A1981 6.605 -3.213 123.726 1.00 49.20 O
ATOM 9 C3' G A1981 8.891 -2.573 123.878 1.00 49.03 C
ATOM 10 O3' G A1981 9.277 -2.806 125.220 1.00 49.44 O
ATOM 11 C2' G A1981 8.756 -3.909 123.149 1.00 48.70 C
ATOM 12 O2' G A1981 9.765 -4.839 123.436 1.00 48.63 O
ATOM 13 C1' G A1981 7.398 -4.388 123.646 1.00 49.00 C
ATOM 14 N9 G A1981 6.724 -5.353 122.746 1.00 48.72 N
ATOM 15 C8 G A1981 5.957 -5.058 121.630 1.00 48.46 C
ATOM 16 N7 G A1981 5.471 -6.077 120.971 1.00 48.26 N
ATOM 17 C5 G A1981 5.943 -7.130 121.687 1.00 48.38 C
ATOM 18 C6 G A1981 5.715 -8.492 121.448 1.00 48.28 C
ATOM 19 O6 G A1981 5.085 -9.010 120.538 1.00 48.05 O
ATOM 20 N1 G A1981 6.316 -9.268 122.411 1.00 48.50 N
ATOM 21 C2 G A1981 7.039 -8.757 123.434 1.00 48.77 C
ATOM 22 N2 G A1981 7.517 -9.684 124.217 1.00 48.96 N
ATOM 23 N3 G A1981 7.273 -7.492 123.694 1.00 48.88 N
ATOM 24 C4 G A1981 6.696 -6.723 122.777 1.00 48.67 C
ATOM 25 P U A1982 9.919 -1.631 126.113 1.00 48.05 P
ATOM 26 OP1 U A1982 10.525 -0.651 125.199 1.00 47.73 O
ATOM 27 OP2 U A1982 10.765 -2.304 127.098 1.00 48.27 O
ATOM 28 O5' U A1982 8.689 -0.970 126.847 1.00 48.50 O
TER
ATOM 1 O3' U B1982 4.654 0.008 128.311 1.00 49.62 O
ATOM 2 P U B1983 3.591 -1.139 128.449 1.00 53.19 P
ATOM 3 OP1 U B1983 2.357 -0.539 128.977 1.00 53.61 O
ATOM 4 OP2 U B1983 4.233 -2.242 129.202 1.00 53.30 O
ATOM 5 O5' U B1983 3.374 -1.557 126.949 1.00 52.63 O
ATOM 6 C5' U B1983 2.905 -0.622 126.003 1.00 52.43 C
ATOM 7 C4' U B1983 2.660 -1.281 124.681 1.00 51.95 C
ATOM 8 O4' U B1983 3.780 -2.128 124.332 1.00 51.61 O
ATOM 9 C3' U B1983 1.473 -2.198 124.634 1.00 52.03 C
ATOM 10 O3' U B1983 0.300 -1.475 124.401 1.00 52.18 O
ATOM 11 C2' U B1983 1.821 -3.128 123.494 1.00 51.52 C
ATOM 12 O2' U B1983 1.552 -2.485 122.248 1.00 51.19 O
ATOM 13 C1' U B1983 3.332 -3.256 123.646 1.00 51.35 C
ATOM 14 N1 U B1983 3.757 -4.466 124.410 1.00 51.48 N
ATOM 15 C2 U B1983 3.546 -5.786 123.956 1.00 51.28 C
ATOM 16 O2 U B1983 2.952 -6.159 122.963 1.00 51.00 O
ATOM 17 N3 U B1983 4.044 -6.771 124.736 1.00 51.43 N
ATOM 18 C4 U B1983 4.736 -6.601 125.894 1.00 51.75 C
ATOM 19 O4 U B1983 5.096 -7.634 126.460 1.00 51.86 O
ATOM 20 C5 U B1983 4.937 -5.246 126.312 1.00 51.95 C
ATOM 21 C6 U B1983 4.460 -4.255 125.571 1.00 51.80 C
ATOM 22 P G B1984 -1.067 -1.850 125.130 1.00 54.24 P
ATOM 23 OP1 G B1984 -2.044 -0.833 124.685 1.00 54.33 O
ATOM 24 OP2 G B1984 -0.784 -1.997 126.568 1.00 54.69 O
ATOM 25 O5' G B1984 -1.431 -3.258 124.513 1.00 53.98 O
TER
Atoms:
OP1: (5.194,-2.248,120.548)
OP2: (5.999,0.142,120.234)
C3': (8.891,-2.573,123.878)
C1': (7.398,-4.388,123.646)
C5': (7.145,-1.020,122.827)
O6: (5.085,-9.010,120.538)
O4': (6.605,-3.213,123.726)
C8: (5.957,-5.058,121.630)
C2: (7.039,-8.757,123.434)
C6: (5.715,-8.492,121.448)
C5: (5.943,-7.130,121.687)
C4: (6.696,-6.723,122.777)
P: (6.311,-1.294,120.373)
C4': (7.467,-2.047,123.884)
C2': (8.756,-3.909,123.149)
O2': (9.765,-4.839,123.436)
N1: (6.316,-9.268,122.411)
N2: (7.517,-9.684,124.217)
N3: (7.273,-7.492,123.694)
N7: (5.471,-6.077,120.971)
N9: (6.724,-5.353,122.746)
O5': (7.386,-1.509,121.512)
O3': (9.277,-2.806,125.220)
OP2: (5.999,0.142,120.234)
C3': (8.891,-2.573,123.878)
C1': (7.398,-4.388,123.646)
C5': (7.145,-1.020,122.827)
O6: (5.085,-9.010,120.538)
O4': (6.605,-3.213,123.726)
C8: (5.957,-5.058,121.630)
C2: (7.039,-8.757,123.434)
C6: (5.715,-8.492,121.448)
C5: (5.943,-7.130,121.687)
C4: (6.696,-6.723,122.777)
P: (6.311,-1.294,120.373)
C4': (7.467,-2.047,123.884)
C2': (8.756,-3.909,123.149)
O2': (9.765,-4.839,123.436)
N1: (6.316,-9.268,122.411)
N2: (7.517,-9.684,124.217)
N3: (7.273,-7.492,123.694)
N7: (5.471,-6.077,120.971)
N9: (6.724,-5.353,122.746)
O5': (7.386,-1.509,121.512)
O3': (9.277,-2.806,125.220)
C4: (4.736,-6.601,125.894)
N3: (4.044,-6.771,124.736)
OP1: (2.357,-0.539,128.977)
OP2: (4.233,-2.242,129.202)
C2: (3.546,-5.786,123.956)
C1': (3.332,-3.256,123.646)
C3': (1.473,-2.198,124.634)
O5': (3.374,-1.557,126.949)
O4': (3.780,-2.128,124.332)
C5': (2.905,-0.622,126.003)
P: (3.591,-1.139,128.449)
C4': (2.660,-1.281,124.681)
C2': (1.821,-3.128,123.494)
O2': (1.552,-2.485,122.248)
N1: (3.757,-4.466,124.410)
O4: (5.096,-7.634,126.460)
O2: (2.952,-6.159,122.963)
C6: (4.460,-4.255,125.571)
C5: (4.937,-5.246,126.312)
O3': (0.300,-1.475,124.401)
N3: (4.044,-6.771,124.736)
OP1: (2.357,-0.539,128.977)
OP2: (4.233,-2.242,129.202)
C2: (3.546,-5.786,123.956)
C1': (3.332,-3.256,123.646)
C3': (1.473,-2.198,124.634)
O5': (3.374,-1.557,126.949)
O4': (3.780,-2.128,124.332)
C5': (2.905,-0.622,126.003)
P: (3.591,-1.139,128.449)
C4': (2.660,-1.281,124.681)
C2': (1.821,-3.128,123.494)
O2': (1.552,-2.485,122.248)
N1: (3.757,-4.466,124.410)
O4: (5.096,-7.634,126.460)
O2: (2.952,-6.159,122.963)
C6: (4.460,-4.255,125.571)
C5: (4.937,-5.246,126.312)
O3': (0.300,-1.475,124.401)
Image (generated by PyMOL):