Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3D2X:A41:A39
Extra
PDB:
ATOM 1 O3' U A 40 -10.397 -58.932 13.728 1.00 29.81 O
ATOM 2 P G A 41 -9.480 -57.804 14.396 1.00 28.83 P
ATOM 3 OP1 G A 41 -8.271 -57.616 13.540 1.00 28.83 O
ATOM 4 OP2 G A 41 -9.321 -58.170 15.827 1.00 27.06 O
ATOM 5 O5' G A 41 -10.386 -56.497 14.335 1.00 27.48 O
ATOM 6 C5' G A 41 -10.925 -56.005 13.094 1.00 24.11 C
ATOM 7 C4' G A 41 -11.568 -54.654 13.317 1.00 22.83 C
ATOM 8 O4' G A 41 -12.648 -54.789 14.284 1.00 22.90 O
ATOM 9 C3' G A 41 -10.670 -53.604 13.953 1.00 22.17 C
ATOM 10 O3' G A 41 -9.815 -52.933 13.061 1.00 20.39 O
ATOM 11 C2' G A 41 -11.668 -52.654 14.586 1.00 21.72 C
ATOM 12 O2' G A 41 -12.248 -51.810 13.613 1.00 21.50 O
ATOM 13 C1' G A 41 -12.701 -53.638 15.119 1.00 21.89 C
ATOM 14 N9 G A 41 -12.339 -54.041 16.476 1.00 21.48 N
ATOM 15 C8 G A 41 -11.632 -55.160 16.843 1.00 20.23 C
ATOM 16 N7 G A 41 -11.444 -55.249 18.130 1.00 20.62 N
ATOM 17 C5 G A 41 -12.060 -54.121 18.648 1.00 20.78 C
ATOM 18 C6 G A 41 -12.170 -53.671 19.983 1.00 21.74 C
ATOM 19 O6 G A 41 -11.701 -54.182 21.009 1.00 22.23 O
ATOM 20 N1 G A 41 -12.894 -52.489 20.066 1.00 21.37 N
ATOM 21 C2 G A 41 -13.418 -51.811 19.000 1.00 20.66 C
ATOM 22 N2 G A 41 -14.086 -50.685 19.290 1.00 21.10 N
ATOM 23 N3 G A 41 -13.302 -52.203 17.746 1.00 20.49 N
ATOM 24 C4 G A 41 -12.622 -53.364 17.644 1.00 21.48 C
ATOM 25 P A A 42 -8.472 -52.290 13.633 1.00 18.63 P
ATOM 26 OP1 A A 42 -7.359 -53.250 13.526 1.00 17.13 O
ATOM 27 OP2 A A 42 -8.789 -51.674 14.946 1.00 20.14 O
ATOM 28 O5' A A 42 -8.228 -51.085 12.655 1.00 19.40 O
TER
ATOM 1 O3' U B 38 -17.258 -54.692 14.250 1.00 28.10 O
ATOM 2 P U B 39 -17.436 -56.250 13.895 1.00 28.86 P
ATOM 3 OP1 U B 39 -16.729 -56.522 12.612 1.00 27.89 O
ATOM 4 OP2 U B 39 -18.871 -56.580 14.021 1.00 28.44 O
ATOM 5 O5' U B 39 -16.658 -56.974 15.076 1.00 28.59 O
ATOM 6 C5' U B 39 -15.229 -57.094 15.035 1.00 29.67 C
ATOM 7 C4' U B 39 -14.667 -57.206 16.430 1.00 30.59 C
ATOM 8 O4' U B 39 -14.609 -55.903 17.074 1.00 31.05 O
ATOM 9 C3' U B 39 -15.413 -58.132 17.375 1.00 31.49 C
ATOM 10 O3' U B 39 -14.482 -58.933 18.074 1.00 31.74 O
ATOM 11 C2' U B 39 -16.141 -57.171 18.312 1.00 31.12 C
ATOM 12 O2' U B 39 -16.357 -57.713 19.597 1.00 31.77 O
ATOM 13 C1' U B 39 -15.176 -55.986 18.363 1.00 30.54 C
ATOM 14 N1 U B 39 -15.833 -54.707 18.670 1.00 30.18 N
ATOM 15 C2 U B 39 -15.817 -54.265 19.986 1.00 29.55 C
ATOM 16 O2 U B 39 -15.225 -54.844 20.877 1.00 31.40 O
ATOM 17 N3 U B 39 -16.514 -53.112 20.218 1.00 28.79 N
ATOM 18 C4 U B 39 -17.199 -52.360 19.299 1.00 28.61 C
ATOM 19 O4 U B 39 -17.898 -51.425 19.690 1.00 29.38 O
ATOM 20 C5 U B 39 -17.128 -52.848 17.958 1.00 29.43 C
ATOM 21 C6 U B 39 -16.465 -53.978 17.696 1.00 29.94 C
ATOM 22 P U B 40 -14.334 -60.474 17.677 1.00 33.13 P
ATOM 23 OP1 U B 40 -15.662 -60.969 17.230 1.00 33.36 O
ATOM 24 OP2 U B 40 -13.644 -61.143 18.801 1.00 34.49 O
ATOM 25 O5' U B 40 -13.370 -60.463 16.411 1.00 32.16 O
TER
ATOM 2 P G A 41 -9.480 -57.804 14.396 1.00 28.83 P
ATOM 3 OP1 G A 41 -8.271 -57.616 13.540 1.00 28.83 O
ATOM 4 OP2 G A 41 -9.321 -58.170 15.827 1.00 27.06 O
ATOM 5 O5' G A 41 -10.386 -56.497 14.335 1.00 27.48 O
ATOM 6 C5' G A 41 -10.925 -56.005 13.094 1.00 24.11 C
ATOM 7 C4' G A 41 -11.568 -54.654 13.317 1.00 22.83 C
ATOM 8 O4' G A 41 -12.648 -54.789 14.284 1.00 22.90 O
ATOM 9 C3' G A 41 -10.670 -53.604 13.953 1.00 22.17 C
ATOM 10 O3' G A 41 -9.815 -52.933 13.061 1.00 20.39 O
ATOM 11 C2' G A 41 -11.668 -52.654 14.586 1.00 21.72 C
ATOM 12 O2' G A 41 -12.248 -51.810 13.613 1.00 21.50 O
ATOM 13 C1' G A 41 -12.701 -53.638 15.119 1.00 21.89 C
ATOM 14 N9 G A 41 -12.339 -54.041 16.476 1.00 21.48 N
ATOM 15 C8 G A 41 -11.632 -55.160 16.843 1.00 20.23 C
ATOM 16 N7 G A 41 -11.444 -55.249 18.130 1.00 20.62 N
ATOM 17 C5 G A 41 -12.060 -54.121 18.648 1.00 20.78 C
ATOM 18 C6 G A 41 -12.170 -53.671 19.983 1.00 21.74 C
ATOM 19 O6 G A 41 -11.701 -54.182 21.009 1.00 22.23 O
ATOM 20 N1 G A 41 -12.894 -52.489 20.066 1.00 21.37 N
ATOM 21 C2 G A 41 -13.418 -51.811 19.000 1.00 20.66 C
ATOM 22 N2 G A 41 -14.086 -50.685 19.290 1.00 21.10 N
ATOM 23 N3 G A 41 -13.302 -52.203 17.746 1.00 20.49 N
ATOM 24 C4 G A 41 -12.622 -53.364 17.644 1.00 21.48 C
ATOM 25 P A A 42 -8.472 -52.290 13.633 1.00 18.63 P
ATOM 26 OP1 A A 42 -7.359 -53.250 13.526 1.00 17.13 O
ATOM 27 OP2 A A 42 -8.789 -51.674 14.946 1.00 20.14 O
ATOM 28 O5' A A 42 -8.228 -51.085 12.655 1.00 19.40 O
TER
ATOM 1 O3' U B 38 -17.258 -54.692 14.250 1.00 28.10 O
ATOM 2 P U B 39 -17.436 -56.250 13.895 1.00 28.86 P
ATOM 3 OP1 U B 39 -16.729 -56.522 12.612 1.00 27.89 O
ATOM 4 OP2 U B 39 -18.871 -56.580 14.021 1.00 28.44 O
ATOM 5 O5' U B 39 -16.658 -56.974 15.076 1.00 28.59 O
ATOM 6 C5' U B 39 -15.229 -57.094 15.035 1.00 29.67 C
ATOM 7 C4' U B 39 -14.667 -57.206 16.430 1.00 30.59 C
ATOM 8 O4' U B 39 -14.609 -55.903 17.074 1.00 31.05 O
ATOM 9 C3' U B 39 -15.413 -58.132 17.375 1.00 31.49 C
ATOM 10 O3' U B 39 -14.482 -58.933 18.074 1.00 31.74 O
ATOM 11 C2' U B 39 -16.141 -57.171 18.312 1.00 31.12 C
ATOM 12 O2' U B 39 -16.357 -57.713 19.597 1.00 31.77 O
ATOM 13 C1' U B 39 -15.176 -55.986 18.363 1.00 30.54 C
ATOM 14 N1 U B 39 -15.833 -54.707 18.670 1.00 30.18 N
ATOM 15 C2 U B 39 -15.817 -54.265 19.986 1.00 29.55 C
ATOM 16 O2 U B 39 -15.225 -54.844 20.877 1.00 31.40 O
ATOM 17 N3 U B 39 -16.514 -53.112 20.218 1.00 28.79 N
ATOM 18 C4 U B 39 -17.199 -52.360 19.299 1.00 28.61 C
ATOM 19 O4 U B 39 -17.898 -51.425 19.690 1.00 29.38 O
ATOM 20 C5 U B 39 -17.128 -52.848 17.958 1.00 29.43 C
ATOM 21 C6 U B 39 -16.465 -53.978 17.696 1.00 29.94 C
ATOM 22 P U B 40 -14.334 -60.474 17.677 1.00 33.13 P
ATOM 23 OP1 U B 40 -15.662 -60.969 17.230 1.00 33.36 O
ATOM 24 OP2 U B 40 -13.644 -61.143 18.801 1.00 34.49 O
ATOM 25 O5' U B 40 -13.370 -60.463 16.411 1.00 32.16 O
TER
Atoms:
OP1: (-8.271,-57.616,13.540)
OP2: (-9.321,-58.170,15.827)
C3': (-10.670,-53.604,13.953)
C1': (-12.701,-53.638,15.119)
C5': (-10.925,-56.005,13.094)
O6: (-11.701,-54.182,21.009)
O4': (-12.648,-54.789,14.284)
C8: (-11.632,-55.160,16.843)
C2: (-13.418,-51.811,19.000)
C6: (-12.170,-53.671,19.983)
C5: (-12.060,-54.121,18.648)
C4: (-12.622,-53.364,17.644)
P: (-9.480,-57.804,14.396)
C4': (-11.568,-54.654,13.317)
C2': (-11.668,-52.654,14.586)
O2': (-12.248,-51.810,13.613)
N1: (-12.894,-52.489,20.066)
N2: (-14.086,-50.685,19.290)
N3: (-13.302,-52.203,17.746)
N7: (-11.444,-55.249,18.130)
N9: (-12.339,-54.041,16.476)
O5': (-10.386,-56.497,14.335)
O3': (-9.815,-52.933,13.061)
OP2: (-9.321,-58.170,15.827)
C3': (-10.670,-53.604,13.953)
C1': (-12.701,-53.638,15.119)
C5': (-10.925,-56.005,13.094)
O6: (-11.701,-54.182,21.009)
O4': (-12.648,-54.789,14.284)
C8: (-11.632,-55.160,16.843)
C2: (-13.418,-51.811,19.000)
C6: (-12.170,-53.671,19.983)
C5: (-12.060,-54.121,18.648)
C4: (-12.622,-53.364,17.644)
P: (-9.480,-57.804,14.396)
C4': (-11.568,-54.654,13.317)
C2': (-11.668,-52.654,14.586)
O2': (-12.248,-51.810,13.613)
N1: (-12.894,-52.489,20.066)
N2: (-14.086,-50.685,19.290)
N3: (-13.302,-52.203,17.746)
N7: (-11.444,-55.249,18.130)
N9: (-12.339,-54.041,16.476)
O5': (-10.386,-56.497,14.335)
O3': (-9.815,-52.933,13.061)
C4: (-17.199,-52.360,19.299)
N3: (-16.514,-53.112,20.218)
OP1: (-16.729,-56.522,12.612)
OP2: (-18.871,-56.580,14.021)
C2: (-15.817,-54.265,19.986)
C1': (-15.176,-55.986,18.363)
C3': (-15.413,-58.132,17.375)
O5': (-16.658,-56.974,15.076)
O4': (-14.609,-55.903,17.074)
C5': (-15.229,-57.094,15.035)
P: (-17.436,-56.250,13.895)
C4': (-14.667,-57.206,16.430)
C2': (-16.141,-57.171,18.312)
O2': (-16.357,-57.713,19.597)
N1: (-15.833,-54.707,18.670)
O4: (-17.898,-51.425,19.690)
O2: (-15.225,-54.844,20.877)
C6: (-16.465,-53.978,17.696)
C5: (-17.128,-52.848,17.958)
O3': (-14.482,-58.933,18.074)
N3: (-16.514,-53.112,20.218)
OP1: (-16.729,-56.522,12.612)
OP2: (-18.871,-56.580,14.021)
C2: (-15.817,-54.265,19.986)
C1': (-15.176,-55.986,18.363)
C3': (-15.413,-58.132,17.375)
O5': (-16.658,-56.974,15.076)
O4': (-14.609,-55.903,17.074)
C5': (-15.229,-57.094,15.035)
P: (-17.436,-56.250,13.895)
C4': (-14.667,-57.206,16.430)
C2': (-16.141,-57.171,18.312)
O2': (-16.357,-57.713,19.597)
N1: (-15.833,-54.707,18.670)
O4: (-17.898,-51.425,19.690)
O2: (-15.225,-54.844,20.877)
C6: (-16.465,-53.978,17.696)
C5: (-17.128,-52.848,17.958)
O3': (-14.482,-58.933,18.074)
Image (generated by PyMOL):