Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3D2V:B41:B39
Extra
PDB:
ATOM 1 O3' U A 40 -11.798 58.383 -13.431 1.00 56.97 O
ATOM 2 P G A 41 -10.792 57.178 -13.745 1.00 59.30 P
ATOM 3 OP1 G A 41 -9.893 57.042 -12.577 1.00 53.11 O
ATOM 4 OP2 G A 41 -10.220 57.384 -15.094 1.00 51.10 O
ATOM 5 O5' G A 41 -11.756 55.901 -13.782 1.00 50.85 O
ATOM 6 C5' G A 41 -12.555 55.569 -12.654 1.00 42.89 C
ATOM 7 C4' G A 41 -13.204 54.210 -12.844 1.00 41.44 C
ATOM 8 O4' G A 41 -14.183 54.268 -13.913 1.00 41.15 O
ATOM 9 C3' G A 41 -12.260 53.100 -13.281 1.00 37.44 C
ATOM 10 O3' G A 41 -11.561 52.559 -12.172 1.00 34.68 O
ATOM 11 C2' G A 41 -13.261 52.104 -13.851 1.00 36.86 C
ATOM 12 O2' G A 41 -14.012 51.467 -12.839 1.00 33.86 O
ATOM 13 C1' G A 41 -14.163 53.047 -14.634 1.00 36.16 C
ATOM 14 N9 G A 41 -13.689 53.314 -15.988 1.00 38.79 N
ATOM 15 C8 G A 41 -12.955 54.398 -16.407 1.00 38.99 C
ATOM 16 N7 G A 41 -12.675 54.373 -17.681 1.00 38.46 N
ATOM 17 C5 G A 41 -13.262 53.198 -18.136 1.00 36.00 C
ATOM 18 C6 G A 41 -13.292 52.640 -19.434 1.00 36.85 C
ATOM 19 O6 G A 41 -12.789 53.088 -20.473 1.00 38.01 O
ATOM 20 N1 G A 41 -13.995 51.438 -19.463 1.00 34.40 N
ATOM 21 C2 G A 41 -14.593 50.851 -18.375 1.00 36.06 C
ATOM 22 N2 G A 41 -15.225 49.689 -18.599 1.00 34.68 N
ATOM 23 N3 G A 41 -14.571 51.364 -17.151 1.00 36.85 N
ATOM 24 C4 G A 41 -13.891 52.535 -17.107 1.00 36.41 C
ATOM 25 P A A 42 -10.092 51.972 -12.402 1.00 33.67 P
ATOM 26 OP1 A A 42 -9.157 53.101 -12.587 1.00 34.91 O
ATOM 27 OP2 A A 42 -10.191 50.925 -13.442 1.00 36.39 O
ATOM 28 O5' A A 42 -9.750 51.295 -11.000 1.00 31.84 O
TER
ATOM 1 O3' U B 38 -18.444 54.065 -13.752 1.00 40.69 O
ATOM 2 P U B 39 -18.929 55.585 -13.592 1.00 45.58 P
ATOM 3 OP1 U B 39 -18.495 56.065 -12.261 1.00 43.76 O
ATOM 4 OP2 U B 39 -20.359 55.648 -13.964 1.00 47.30 O
ATOM 5 O5' U B 39 -18.063 56.351 -14.695 1.00 43.44 O
ATOM 6 C5' U B 39 -16.660 56.481 -14.523 1.00 44.59 C
ATOM 7 C4' U B 39 -15.943 56.276 -15.845 1.00 46.87 C
ATOM 8 O4' U B 39 -16.124 54.911 -16.303 1.00 41.84 O
ATOM 9 C3' U B 39 -16.416 57.171 -16.989 1.00 48.10 C
ATOM 10 O3' U B 39 -15.281 57.704 -17.661 1.00 52.79 O
ATOM 11 C2' U B 39 -17.195 56.210 -17.883 1.00 48.28 C
ATOM 12 O2' U B 39 -17.188 56.604 -19.240 1.00 49.83 O
ATOM 13 C1' U B 39 -16.370 54.946 -17.692 1.00 42.59 C
ATOM 14 N1 U B 39 -17.056 53.690 -18.101 1.00 37.77 N
ATOM 15 C2 U B 39 -16.838 53.185 -19.365 1.00 39.16 C
ATOM 16 O2 U B 39 -16.109 53.717 -20.181 1.00 42.31 O
ATOM 17 N3 U B 39 -17.513 52.025 -19.649 1.00 37.55 N
ATOM 18 C4 U B 39 -18.365 51.331 -18.809 1.00 43.78 C
ATOM 19 O4 U B 39 -18.902 50.298 -19.203 1.00 43.72 O
ATOM 20 C5 U B 39 -18.539 51.920 -17.506 1.00 39.87 C
ATOM 21 C6 U B 39 -17.892 53.052 -17.209 1.00 42.77 C
ATOM 22 P U B 40 -15.202 59.267 -17.993 1.00 60.82 P
ATOM 23 OP1 U B 40 -16.537 59.855 -17.742 1.00 58.58 O
ATOM 24 OP2 U B 40 -14.559 59.417 -19.317 1.00 59.83 O
ATOM 25 O5' U B 40 -14.210 59.813 -16.864 1.00 56.52 O
TER
ATOM 2 P G A 41 -10.792 57.178 -13.745 1.00 59.30 P
ATOM 3 OP1 G A 41 -9.893 57.042 -12.577 1.00 53.11 O
ATOM 4 OP2 G A 41 -10.220 57.384 -15.094 1.00 51.10 O
ATOM 5 O5' G A 41 -11.756 55.901 -13.782 1.00 50.85 O
ATOM 6 C5' G A 41 -12.555 55.569 -12.654 1.00 42.89 C
ATOM 7 C4' G A 41 -13.204 54.210 -12.844 1.00 41.44 C
ATOM 8 O4' G A 41 -14.183 54.268 -13.913 1.00 41.15 O
ATOM 9 C3' G A 41 -12.260 53.100 -13.281 1.00 37.44 C
ATOM 10 O3' G A 41 -11.561 52.559 -12.172 1.00 34.68 O
ATOM 11 C2' G A 41 -13.261 52.104 -13.851 1.00 36.86 C
ATOM 12 O2' G A 41 -14.012 51.467 -12.839 1.00 33.86 O
ATOM 13 C1' G A 41 -14.163 53.047 -14.634 1.00 36.16 C
ATOM 14 N9 G A 41 -13.689 53.314 -15.988 1.00 38.79 N
ATOM 15 C8 G A 41 -12.955 54.398 -16.407 1.00 38.99 C
ATOM 16 N7 G A 41 -12.675 54.373 -17.681 1.00 38.46 N
ATOM 17 C5 G A 41 -13.262 53.198 -18.136 1.00 36.00 C
ATOM 18 C6 G A 41 -13.292 52.640 -19.434 1.00 36.85 C
ATOM 19 O6 G A 41 -12.789 53.088 -20.473 1.00 38.01 O
ATOM 20 N1 G A 41 -13.995 51.438 -19.463 1.00 34.40 N
ATOM 21 C2 G A 41 -14.593 50.851 -18.375 1.00 36.06 C
ATOM 22 N2 G A 41 -15.225 49.689 -18.599 1.00 34.68 N
ATOM 23 N3 G A 41 -14.571 51.364 -17.151 1.00 36.85 N
ATOM 24 C4 G A 41 -13.891 52.535 -17.107 1.00 36.41 C
ATOM 25 P A A 42 -10.092 51.972 -12.402 1.00 33.67 P
ATOM 26 OP1 A A 42 -9.157 53.101 -12.587 1.00 34.91 O
ATOM 27 OP2 A A 42 -10.191 50.925 -13.442 1.00 36.39 O
ATOM 28 O5' A A 42 -9.750 51.295 -11.000 1.00 31.84 O
TER
ATOM 1 O3' U B 38 -18.444 54.065 -13.752 1.00 40.69 O
ATOM 2 P U B 39 -18.929 55.585 -13.592 1.00 45.58 P
ATOM 3 OP1 U B 39 -18.495 56.065 -12.261 1.00 43.76 O
ATOM 4 OP2 U B 39 -20.359 55.648 -13.964 1.00 47.30 O
ATOM 5 O5' U B 39 -18.063 56.351 -14.695 1.00 43.44 O
ATOM 6 C5' U B 39 -16.660 56.481 -14.523 1.00 44.59 C
ATOM 7 C4' U B 39 -15.943 56.276 -15.845 1.00 46.87 C
ATOM 8 O4' U B 39 -16.124 54.911 -16.303 1.00 41.84 O
ATOM 9 C3' U B 39 -16.416 57.171 -16.989 1.00 48.10 C
ATOM 10 O3' U B 39 -15.281 57.704 -17.661 1.00 52.79 O
ATOM 11 C2' U B 39 -17.195 56.210 -17.883 1.00 48.28 C
ATOM 12 O2' U B 39 -17.188 56.604 -19.240 1.00 49.83 O
ATOM 13 C1' U B 39 -16.370 54.946 -17.692 1.00 42.59 C
ATOM 14 N1 U B 39 -17.056 53.690 -18.101 1.00 37.77 N
ATOM 15 C2 U B 39 -16.838 53.185 -19.365 1.00 39.16 C
ATOM 16 O2 U B 39 -16.109 53.717 -20.181 1.00 42.31 O
ATOM 17 N3 U B 39 -17.513 52.025 -19.649 1.00 37.55 N
ATOM 18 C4 U B 39 -18.365 51.331 -18.809 1.00 43.78 C
ATOM 19 O4 U B 39 -18.902 50.298 -19.203 1.00 43.72 O
ATOM 20 C5 U B 39 -18.539 51.920 -17.506 1.00 39.87 C
ATOM 21 C6 U B 39 -17.892 53.052 -17.209 1.00 42.77 C
ATOM 22 P U B 40 -15.202 59.267 -17.993 1.00 60.82 P
ATOM 23 OP1 U B 40 -16.537 59.855 -17.742 1.00 58.58 O
ATOM 24 OP2 U B 40 -14.559 59.417 -19.317 1.00 59.83 O
ATOM 25 O5' U B 40 -14.210 59.813 -16.864 1.00 56.52 O
TER
Atoms:
OP1: (-9.893,57.042,-12.577)
OP2: (-10.220,57.384,-15.094)
C3': (-12.260,53.100,-13.281)
C1': (-14.163,53.047,-14.634)
C5': (-12.555,55.569,-12.654)
O6: (-12.789,53.088,-20.473)
O4': (-14.183,54.268,-13.913)
C8: (-12.955,54.398,-16.407)
C2: (-14.593,50.851,-18.375)
C6: (-13.292,52.640,-19.434)
C5: (-13.262,53.198,-18.136)
C4: (-13.891,52.535,-17.107)
P: (-10.792,57.178,-13.745)
C4': (-13.204,54.210,-12.844)
C2': (-13.261,52.104,-13.851)
O2': (-14.012,51.467,-12.839)
N1: (-13.995,51.438,-19.463)
N2: (-15.225,49.689,-18.599)
N3: (-14.571,51.364,-17.151)
N7: (-12.675,54.373,-17.681)
N9: (-13.689,53.314,-15.988)
O5': (-11.756,55.901,-13.782)
O3': (-11.561,52.559,-12.172)
OP2: (-10.220,57.384,-15.094)
C3': (-12.260,53.100,-13.281)
C1': (-14.163,53.047,-14.634)
C5': (-12.555,55.569,-12.654)
O6: (-12.789,53.088,-20.473)
O4': (-14.183,54.268,-13.913)
C8: (-12.955,54.398,-16.407)
C2: (-14.593,50.851,-18.375)
C6: (-13.292,52.640,-19.434)
C5: (-13.262,53.198,-18.136)
C4: (-13.891,52.535,-17.107)
P: (-10.792,57.178,-13.745)
C4': (-13.204,54.210,-12.844)
C2': (-13.261,52.104,-13.851)
O2': (-14.012,51.467,-12.839)
N1: (-13.995,51.438,-19.463)
N2: (-15.225,49.689,-18.599)
N3: (-14.571,51.364,-17.151)
N7: (-12.675,54.373,-17.681)
N9: (-13.689,53.314,-15.988)
O5': (-11.756,55.901,-13.782)
O3': (-11.561,52.559,-12.172)
C4: (-18.365,51.331,-18.809)
N3: (-17.513,52.025,-19.649)
OP1: (-18.495,56.065,-12.261)
OP2: (-20.359,55.648,-13.964)
C2: (-16.838,53.185,-19.365)
C1': (-16.370,54.946,-17.692)
C3': (-16.416,57.171,-16.989)
O5': (-18.063,56.351,-14.695)
O4': (-16.124,54.911,-16.303)
C5': (-16.660,56.481,-14.523)
P: (-18.929,55.585,-13.592)
C4': (-15.943,56.276,-15.845)
C2': (-17.195,56.210,-17.883)
O2': (-17.188,56.604,-19.240)
N1: (-17.056,53.690,-18.101)
O4: (-18.902,50.298,-19.203)
O2: (-16.109,53.717,-20.181)
C6: (-17.892,53.052,-17.209)
C5: (-18.539,51.920,-17.506)
O3': (-15.281,57.704,-17.661)
N3: (-17.513,52.025,-19.649)
OP1: (-18.495,56.065,-12.261)
OP2: (-20.359,55.648,-13.964)
C2: (-16.838,53.185,-19.365)
C1': (-16.370,54.946,-17.692)
C3': (-16.416,57.171,-16.989)
O5': (-18.063,56.351,-14.695)
O4': (-16.124,54.911,-16.303)
C5': (-16.660,56.481,-14.523)
P: (-18.929,55.585,-13.592)
C4': (-15.943,56.276,-15.845)
C2': (-17.195,56.210,-17.883)
O2': (-17.188,56.604,-19.240)
N1: (-17.056,53.690,-18.101)
O4: (-18.902,50.298,-19.203)
O2: (-16.109,53.717,-20.181)
C6: (-17.892,53.052,-17.209)
C5: (-18.539,51.920,-17.506)
O3': (-15.281,57.704,-17.661)
Image (generated by PyMOL):