Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2CKY:A41:A39
Extra
PDB:
ATOM 1 O3' U A 40 -6.518 -4.546 -54.119 1.00 48.29 O
ATOM 2 P G A 41 -6.540 -3.258 -53.219 1.00 47.28 P
ATOM 3 OP1 G A 41 -5.830 -3.577 -51.941 1.00 43.25 O
ATOM 4 OP2 G A 41 -7.978 -2.869 -53.232 1.00 46.69 O
ATOM 5 O5' G A 41 -5.691 -2.228 -54.122 1.00 47.38 O
ATOM 6 C5' G A 41 -4.465 -1.645 -53.684 1.00 46.74 C
ATOM 7 C4' G A 41 -4.202 -0.282 -54.308 1.00 46.17 C
ATOM 8 O4' G A 41 -4.785 -0.178 -55.632 1.00 48.24 O
ATOM 9 C3' G A 41 -4.836 0.939 -53.659 1.00 44.80 C
ATOM 10 O3' G A 41 -4.241 1.300 -52.448 1.00 41.33 O
ATOM 11 C2' G A 41 -4.590 2.002 -54.732 1.00 45.59 C
ATOM 12 O2' G A 41 -3.222 2.392 -54.854 1.00 43.71 O
ATOM 13 C1' G A 41 -5.085 1.194 -55.927 1.00 47.36 C
ATOM 14 N9 G A 41 -6.521 1.260 -56.234 1.00 48.37 N
ATOM 15 C8 G A 41 -7.453 0.296 -55.938 1.00 49.07 C
ATOM 16 N7 G A 41 -8.654 0.575 -56.343 1.00 49.86 N
ATOM 17 C5 G A 41 -8.519 1.796 -56.957 1.00 49.47 C
ATOM 18 C6 G A 41 -9.503 2.580 -57.566 1.00 50.11 C
ATOM 19 O6 G A 41 -10.702 2.334 -57.680 1.00 51.52 O
ATOM 20 N1 G A 41 -8.974 3.759 -58.067 1.00 50.81 N
ATOM 21 C2 G A 41 -7.649 4.135 -57.973 1.00 50.20 C
ATOM 22 N2 G A 41 -7.310 5.316 -58.522 1.00 49.74 N
ATOM 23 N3 G A 41 -6.715 3.393 -57.388 1.00 49.89 N
ATOM 24 C4 G A 41 -7.219 2.235 -56.908 1.00 49.08 C
ATOM 25 P A A 42 -5.208 1.686 -51.253 1.00 39.56 P
ATOM 26 OP1 A A 42 -5.121 0.613 -50.246 1.00 40.12 O
ATOM 27 OP2 A A 42 -6.546 2.041 -51.754 1.00 40.20 O
ATOM 28 O5' A A 42 -4.482 3.008 -50.725 1.00 39.24 O
TER
ATOM 1 O3' U B 38 -2.247 -0.127 -59.611 1.00 44.40 O
ATOM 2 P U B 39 -2.260 -1.686 -59.993 1.00 45.10 P
ATOM 3 OP1 U B 39 -1.567 -2.384 -58.890 1.00 44.38 O
ATOM 4 OP2 U B 39 -1.804 -1.845 -61.395 1.00 46.25 O
ATOM 5 O5' U B 39 -3.812 -2.047 -59.892 1.00 45.17 O
ATOM 6 C5' U B 39 -4.396 -2.130 -58.607 1.00 45.96 C
ATOM 7 C4' U B 39 -5.861 -1.774 -58.669 1.00 48.34 C
ATOM 8 O4' U B 39 -5.962 -0.339 -58.820 1.00 50.19 O
ATOM 9 C3' U B 39 -6.639 -2.370 -59.837 1.00 51.35 C
ATOM 10 O3' U B 39 -7.906 -2.876 -59.421 1.00 52.30 O
ATOM 11 C2' U B 39 -6.856 -1.225 -60.808 1.00 52.59 C
ATOM 12 O2' U B 39 -8.068 -1.377 -61.532 1.00 52.76 O
ATOM 13 C1' U B 39 -6.869 -0.027 -59.855 1.00 52.60 C
ATOM 14 N1 U B 39 -6.454 1.242 -60.514 1.00 53.23 N
ATOM 15 C2 U B 39 -7.418 2.176 -60.807 1.00 53.97 C
ATOM 16 O2 U B 39 -8.589 2.042 -60.532 1.00 54.57 O
ATOM 17 N3 U B 39 -6.954 3.298 -61.434 1.00 54.93 N
ATOM 18 C4 U B 39 -5.645 3.567 -61.785 1.00 54.45 C
ATOM 19 O4 U B 39 -5.393 4.630 -62.345 1.00 54.71 O
ATOM 20 C5 U B 39 -4.687 2.535 -61.465 1.00 53.77 C
ATOM 21 C6 U B 39 -5.124 1.435 -60.848 1.00 53.37 C
ATOM 22 P U B 40 -8.224 -4.410 -59.702 1.00 54.74 P
ATOM 23 OP1 U B 40 -7.258 -4.866 -60.730 1.00 55.10 O
ATOM 24 OP2 U B 40 -9.667 -4.598 -59.994 1.00 56.14 O
ATOM 25 O5' U B 40 -7.884 -5.013 -58.259 1.00 52.35 O
TER
ATOM 2 P G A 41 -6.540 -3.258 -53.219 1.00 47.28 P
ATOM 3 OP1 G A 41 -5.830 -3.577 -51.941 1.00 43.25 O
ATOM 4 OP2 G A 41 -7.978 -2.869 -53.232 1.00 46.69 O
ATOM 5 O5' G A 41 -5.691 -2.228 -54.122 1.00 47.38 O
ATOM 6 C5' G A 41 -4.465 -1.645 -53.684 1.00 46.74 C
ATOM 7 C4' G A 41 -4.202 -0.282 -54.308 1.00 46.17 C
ATOM 8 O4' G A 41 -4.785 -0.178 -55.632 1.00 48.24 O
ATOM 9 C3' G A 41 -4.836 0.939 -53.659 1.00 44.80 C
ATOM 10 O3' G A 41 -4.241 1.300 -52.448 1.00 41.33 O
ATOM 11 C2' G A 41 -4.590 2.002 -54.732 1.00 45.59 C
ATOM 12 O2' G A 41 -3.222 2.392 -54.854 1.00 43.71 O
ATOM 13 C1' G A 41 -5.085 1.194 -55.927 1.00 47.36 C
ATOM 14 N9 G A 41 -6.521 1.260 -56.234 1.00 48.37 N
ATOM 15 C8 G A 41 -7.453 0.296 -55.938 1.00 49.07 C
ATOM 16 N7 G A 41 -8.654 0.575 -56.343 1.00 49.86 N
ATOM 17 C5 G A 41 -8.519 1.796 -56.957 1.00 49.47 C
ATOM 18 C6 G A 41 -9.503 2.580 -57.566 1.00 50.11 C
ATOM 19 O6 G A 41 -10.702 2.334 -57.680 1.00 51.52 O
ATOM 20 N1 G A 41 -8.974 3.759 -58.067 1.00 50.81 N
ATOM 21 C2 G A 41 -7.649 4.135 -57.973 1.00 50.20 C
ATOM 22 N2 G A 41 -7.310 5.316 -58.522 1.00 49.74 N
ATOM 23 N3 G A 41 -6.715 3.393 -57.388 1.00 49.89 N
ATOM 24 C4 G A 41 -7.219 2.235 -56.908 1.00 49.08 C
ATOM 25 P A A 42 -5.208 1.686 -51.253 1.00 39.56 P
ATOM 26 OP1 A A 42 -5.121 0.613 -50.246 1.00 40.12 O
ATOM 27 OP2 A A 42 -6.546 2.041 -51.754 1.00 40.20 O
ATOM 28 O5' A A 42 -4.482 3.008 -50.725 1.00 39.24 O
TER
ATOM 1 O3' U B 38 -2.247 -0.127 -59.611 1.00 44.40 O
ATOM 2 P U B 39 -2.260 -1.686 -59.993 1.00 45.10 P
ATOM 3 OP1 U B 39 -1.567 -2.384 -58.890 1.00 44.38 O
ATOM 4 OP2 U B 39 -1.804 -1.845 -61.395 1.00 46.25 O
ATOM 5 O5' U B 39 -3.812 -2.047 -59.892 1.00 45.17 O
ATOM 6 C5' U B 39 -4.396 -2.130 -58.607 1.00 45.96 C
ATOM 7 C4' U B 39 -5.861 -1.774 -58.669 1.00 48.34 C
ATOM 8 O4' U B 39 -5.962 -0.339 -58.820 1.00 50.19 O
ATOM 9 C3' U B 39 -6.639 -2.370 -59.837 1.00 51.35 C
ATOM 10 O3' U B 39 -7.906 -2.876 -59.421 1.00 52.30 O
ATOM 11 C2' U B 39 -6.856 -1.225 -60.808 1.00 52.59 C
ATOM 12 O2' U B 39 -8.068 -1.377 -61.532 1.00 52.76 O
ATOM 13 C1' U B 39 -6.869 -0.027 -59.855 1.00 52.60 C
ATOM 14 N1 U B 39 -6.454 1.242 -60.514 1.00 53.23 N
ATOM 15 C2 U B 39 -7.418 2.176 -60.807 1.00 53.97 C
ATOM 16 O2 U B 39 -8.589 2.042 -60.532 1.00 54.57 O
ATOM 17 N3 U B 39 -6.954 3.298 -61.434 1.00 54.93 N
ATOM 18 C4 U B 39 -5.645 3.567 -61.785 1.00 54.45 C
ATOM 19 O4 U B 39 -5.393 4.630 -62.345 1.00 54.71 O
ATOM 20 C5 U B 39 -4.687 2.535 -61.465 1.00 53.77 C
ATOM 21 C6 U B 39 -5.124 1.435 -60.848 1.00 53.37 C
ATOM 22 P U B 40 -8.224 -4.410 -59.702 1.00 54.74 P
ATOM 23 OP1 U B 40 -7.258 -4.866 -60.730 1.00 55.10 O
ATOM 24 OP2 U B 40 -9.667 -4.598 -59.994 1.00 56.14 O
ATOM 25 O5' U B 40 -7.884 -5.013 -58.259 1.00 52.35 O
TER
Atoms:
OP1: (-5.830,-3.577,-51.941)
OP2: (-7.978,-2.869,-53.232)
C3': (-4.836,0.939,-53.659)
C1': (-5.085,1.194,-55.927)
C5': (-4.465,-1.645,-53.684)
O6: (-10.702,2.334,-57.680)
O4': (-4.785,-0.178,-55.632)
C8: (-7.453,0.296,-55.938)
C2: (-7.649,4.135,-57.973)
C6: (-9.503,2.580,-57.566)
C5: (-8.519,1.796,-56.957)
C4: (-7.219,2.235,-56.908)
P: (-6.540,-3.258,-53.219)
C4': (-4.202,-0.282,-54.308)
C2': (-4.590,2.002,-54.732)
O2': (-3.222,2.392,-54.854)
N1: (-8.974,3.759,-58.067)
N2: (-7.310,5.316,-58.522)
N3: (-6.715,3.393,-57.388)
N7: (-8.654,0.575,-56.343)
N9: (-6.521,1.260,-56.234)
O5': (-5.691,-2.228,-54.122)
O3': (-4.241,1.300,-52.448)
OP2: (-7.978,-2.869,-53.232)
C3': (-4.836,0.939,-53.659)
C1': (-5.085,1.194,-55.927)
C5': (-4.465,-1.645,-53.684)
O6: (-10.702,2.334,-57.680)
O4': (-4.785,-0.178,-55.632)
C8: (-7.453,0.296,-55.938)
C2: (-7.649,4.135,-57.973)
C6: (-9.503,2.580,-57.566)
C5: (-8.519,1.796,-56.957)
C4: (-7.219,2.235,-56.908)
P: (-6.540,-3.258,-53.219)
C4': (-4.202,-0.282,-54.308)
C2': (-4.590,2.002,-54.732)
O2': (-3.222,2.392,-54.854)
N1: (-8.974,3.759,-58.067)
N2: (-7.310,5.316,-58.522)
N3: (-6.715,3.393,-57.388)
N7: (-8.654,0.575,-56.343)
N9: (-6.521,1.260,-56.234)
O5': (-5.691,-2.228,-54.122)
O3': (-4.241,1.300,-52.448)
C4: (-5.645,3.567,-61.785)
N3: (-6.954,3.298,-61.434)
OP1: (-1.567,-2.384,-58.890)
OP2: (-1.804,-1.845,-61.395)
C2: (-7.418,2.176,-60.807)
C1': (-6.869,-0.027,-59.855)
C3': (-6.639,-2.370,-59.837)
O5': (-3.812,-2.047,-59.892)
O4': (-5.962,-0.339,-58.820)
C5': (-4.396,-2.130,-58.607)
P: (-2.260,-1.686,-59.993)
C4': (-5.861,-1.774,-58.669)
C2': (-6.856,-1.225,-60.808)
O2': (-8.068,-1.377,-61.532)
N1: (-6.454,1.242,-60.514)
O4: (-5.393,4.630,-62.345)
O2: (-8.589,2.042,-60.532)
C6: (-5.124,1.435,-60.848)
C5: (-4.687,2.535,-61.465)
O3': (-7.906,-2.876,-59.421)
N3: (-6.954,3.298,-61.434)
OP1: (-1.567,-2.384,-58.890)
OP2: (-1.804,-1.845,-61.395)
C2: (-7.418,2.176,-60.807)
C1': (-6.869,-0.027,-59.855)
C3': (-6.639,-2.370,-59.837)
O5': (-3.812,-2.047,-59.892)
O4': (-5.962,-0.339,-58.820)
C5': (-4.396,-2.130,-58.607)
P: (-2.260,-1.686,-59.993)
C4': (-5.861,-1.774,-58.669)
C2': (-6.856,-1.225,-60.808)
O2': (-8.068,-1.377,-61.532)
N1: (-6.454,1.242,-60.514)
O4: (-5.393,4.630,-62.345)
O2: (-8.589,2.042,-60.532)
C6: (-5.124,1.435,-60.848)
C5: (-4.687,2.535,-61.465)
O3': (-7.906,-2.876,-59.421)
Image (generated by PyMOL):