Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3D2X:B41:B39
Extra
PDB:
ATOM 1 O3' U A 40 -12.435 2.711 14.292 1.00 51.84 O
ATOM 2 P G A 41 -11.132 1.899 13.758 1.00 49.45 P
ATOM 3 OP1 G A 41 -9.999 2.186 14.684 1.00 49.26 O
ATOM 4 OP2 G A 41 -10.926 2.039 12.296 1.00 49.87 O
ATOM 5 O5' G A 41 -11.529 0.375 13.994 1.00 46.29 O
ATOM 6 C5' G A 41 -12.277 -0.024 15.155 1.00 40.17 C
ATOM 7 C4' G A 41 -12.996 -1.325 14.892 1.00 36.13 C
ATOM 8 O4' G A 41 -13.939 -1.131 13.805 1.00 35.33 O
ATOM 9 C3' G A 41 -12.147 -2.494 14.414 1.00 33.75 C
ATOM 10 O3' G A 41 -11.443 -3.173 15.432 1.00 29.84 O
ATOM 11 C2' G A 41 -13.173 -3.370 13.720 1.00 34.09 C
ATOM 12 O2' G A 41 -13.962 -4.099 14.646 1.00 34.14 O
ATOM 13 C1' G A 41 -14.034 -2.317 13.028 1.00 34.03 C
ATOM 14 N9 G A 41 -13.521 -2.035 11.689 1.00 32.98 N
ATOM 15 C8 G A 41 -12.777 -0.949 11.295 1.00 33.36 C
ATOM 16 N7 G A 41 -12.443 -0.985 10.034 1.00 33.11 N
ATOM 17 C5 G A 41 -13.003 -2.163 9.564 1.00 33.26 C
ATOM 18 C6 G A 41 -12.974 -2.739 8.268 1.00 33.90 C
ATOM 19 O6 G A 41 -12.409 -2.317 7.249 1.00 34.55 O
ATOM 20 N1 G A 41 -13.691 -3.933 8.224 1.00 32.30 N
ATOM 21 C2 G A 41 -14.336 -4.502 9.291 1.00 31.81 C
ATOM 22 N2 G A 41 -14.983 -5.649 9.048 1.00 31.55 N
ATOM 23 N3 G A 41 -14.351 -3.985 10.506 1.00 32.33 N
ATOM 24 C4 G A 41 -13.676 -2.821 10.570 1.00 32.49 C
ATOM 25 P A A 42 -9.858 -3.346 15.280 1.00 28.02 P
ATOM 26 OP1 A A 42 -9.237 -2.007 15.237 1.00 29.77 O
ATOM 27 OP2 A A 42 -9.631 -4.293 14.169 1.00 30.26 O
ATOM 28 O5' A A 42 -9.396 -4.058 16.615 1.00 26.52 O
TER
ATOM 1 O3' U B 38 -18.683 -1.424 13.642 1.00 39.65 O
ATOM 2 P U B 39 -18.722 0.152 13.927 1.00 41.34 P
ATOM 3 OP1 U B 39 -17.976 0.405 15.195 1.00 40.52 O
ATOM 4 OP2 U B 39 -20.145 0.569 13.814 1.00 41.49 O
ATOM 5 O5' U B 39 -17.904 0.772 12.704 1.00 41.43 O
ATOM 6 C5' U B 39 -16.484 0.981 12.808 1.00 42.53 C
ATOM 7 C4' U B 39 -15.814 0.808 11.463 1.00 43.74 C
ATOM 8 O4' U B 39 -15.969 -0.561 10.999 1.00 43.56 O
ATOM 9 C3' U B 39 -16.304 1.706 10.329 1.00 44.80 C
ATOM 10 O3' U B 39 -15.176 2.104 9.548 1.00 46.67 O
ATOM 11 C2' U B 39 -17.166 0.758 9.499 1.00 44.20 C
ATOM 12 O2' U B 39 -17.292 1.100 8.131 1.00 44.34 O
ATOM 13 C1' U B 39 -16.385 -0.540 9.654 1.00 43.47 C
ATOM 14 N1 U B 39 -17.116 -1.772 9.323 1.00 42.55 N
ATOM 15 C2 U B 39 -16.973 -2.247 8.032 1.00 42.30 C
ATOM 16 O2 U B 39 -16.271 -1.702 7.196 1.00 42.67 O
ATOM 17 N3 U B 39 -17.673 -3.387 7.749 1.00 42.45 N
ATOM 18 C4 U B 39 -18.474 -4.098 8.605 1.00 43.42 C
ATOM 19 O4 U B 39 -18.994 -5.144 8.209 1.00 45.05 O
ATOM 20 C5 U B 39 -18.574 -3.548 9.929 1.00 42.80 C
ATOM 21 C6 U B 39 -17.908 -2.431 10.233 1.00 42.24 C
ATOM 22 P U B 40 -14.798 3.659 9.424 1.00 48.58 P
ATOM 23 OP1 U B 40 -16.060 4.439 9.336 1.00 48.83 O
ATOM 24 OP2 U B 40 -13.788 3.768 8.344 1.00 48.39 O
ATOM 25 O5' U B 40 -14.093 4.011 10.808 1.00 49.90 O
TER
ATOM 2 P G A 41 -11.132 1.899 13.758 1.00 49.45 P
ATOM 3 OP1 G A 41 -9.999 2.186 14.684 1.00 49.26 O
ATOM 4 OP2 G A 41 -10.926 2.039 12.296 1.00 49.87 O
ATOM 5 O5' G A 41 -11.529 0.375 13.994 1.00 46.29 O
ATOM 6 C5' G A 41 -12.277 -0.024 15.155 1.00 40.17 C
ATOM 7 C4' G A 41 -12.996 -1.325 14.892 1.00 36.13 C
ATOM 8 O4' G A 41 -13.939 -1.131 13.805 1.00 35.33 O
ATOM 9 C3' G A 41 -12.147 -2.494 14.414 1.00 33.75 C
ATOM 10 O3' G A 41 -11.443 -3.173 15.432 1.00 29.84 O
ATOM 11 C2' G A 41 -13.173 -3.370 13.720 1.00 34.09 C
ATOM 12 O2' G A 41 -13.962 -4.099 14.646 1.00 34.14 O
ATOM 13 C1' G A 41 -14.034 -2.317 13.028 1.00 34.03 C
ATOM 14 N9 G A 41 -13.521 -2.035 11.689 1.00 32.98 N
ATOM 15 C8 G A 41 -12.777 -0.949 11.295 1.00 33.36 C
ATOM 16 N7 G A 41 -12.443 -0.985 10.034 1.00 33.11 N
ATOM 17 C5 G A 41 -13.003 -2.163 9.564 1.00 33.26 C
ATOM 18 C6 G A 41 -12.974 -2.739 8.268 1.00 33.90 C
ATOM 19 O6 G A 41 -12.409 -2.317 7.249 1.00 34.55 O
ATOM 20 N1 G A 41 -13.691 -3.933 8.224 1.00 32.30 N
ATOM 21 C2 G A 41 -14.336 -4.502 9.291 1.00 31.81 C
ATOM 22 N2 G A 41 -14.983 -5.649 9.048 1.00 31.55 N
ATOM 23 N3 G A 41 -14.351 -3.985 10.506 1.00 32.33 N
ATOM 24 C4 G A 41 -13.676 -2.821 10.570 1.00 32.49 C
ATOM 25 P A A 42 -9.858 -3.346 15.280 1.00 28.02 P
ATOM 26 OP1 A A 42 -9.237 -2.007 15.237 1.00 29.77 O
ATOM 27 OP2 A A 42 -9.631 -4.293 14.169 1.00 30.26 O
ATOM 28 O5' A A 42 -9.396 -4.058 16.615 1.00 26.52 O
TER
ATOM 1 O3' U B 38 -18.683 -1.424 13.642 1.00 39.65 O
ATOM 2 P U B 39 -18.722 0.152 13.927 1.00 41.34 P
ATOM 3 OP1 U B 39 -17.976 0.405 15.195 1.00 40.52 O
ATOM 4 OP2 U B 39 -20.145 0.569 13.814 1.00 41.49 O
ATOM 5 O5' U B 39 -17.904 0.772 12.704 1.00 41.43 O
ATOM 6 C5' U B 39 -16.484 0.981 12.808 1.00 42.53 C
ATOM 7 C4' U B 39 -15.814 0.808 11.463 1.00 43.74 C
ATOM 8 O4' U B 39 -15.969 -0.561 10.999 1.00 43.56 O
ATOM 9 C3' U B 39 -16.304 1.706 10.329 1.00 44.80 C
ATOM 10 O3' U B 39 -15.176 2.104 9.548 1.00 46.67 O
ATOM 11 C2' U B 39 -17.166 0.758 9.499 1.00 44.20 C
ATOM 12 O2' U B 39 -17.292 1.100 8.131 1.00 44.34 O
ATOM 13 C1' U B 39 -16.385 -0.540 9.654 1.00 43.47 C
ATOM 14 N1 U B 39 -17.116 -1.772 9.323 1.00 42.55 N
ATOM 15 C2 U B 39 -16.973 -2.247 8.032 1.00 42.30 C
ATOM 16 O2 U B 39 -16.271 -1.702 7.196 1.00 42.67 O
ATOM 17 N3 U B 39 -17.673 -3.387 7.749 1.00 42.45 N
ATOM 18 C4 U B 39 -18.474 -4.098 8.605 1.00 43.42 C
ATOM 19 O4 U B 39 -18.994 -5.144 8.209 1.00 45.05 O
ATOM 20 C5 U B 39 -18.574 -3.548 9.929 1.00 42.80 C
ATOM 21 C6 U B 39 -17.908 -2.431 10.233 1.00 42.24 C
ATOM 22 P U B 40 -14.798 3.659 9.424 1.00 48.58 P
ATOM 23 OP1 U B 40 -16.060 4.439 9.336 1.00 48.83 O
ATOM 24 OP2 U B 40 -13.788 3.768 8.344 1.00 48.39 O
ATOM 25 O5' U B 40 -14.093 4.011 10.808 1.00 49.90 O
TER
Atoms:
OP1: (-9.999,2.186,14.684)
OP2: (-10.926,2.039,12.296)
C3': (-12.147,-2.494,14.414)
C1': (-14.034,-2.317,13.028)
C5': (-12.277,-0.024,15.155)
O6: (-12.409,-2.317,7.249)
O4': (-13.939,-1.131,13.805)
C8: (-12.777,-0.949,11.295)
C2: (-14.336,-4.502,9.291)
C6: (-12.974,-2.739,8.268)
C5: (-13.003,-2.163,9.564)
C4: (-13.676,-2.821,10.570)
P: (-11.132,1.899,13.758)
C4': (-12.996,-1.325,14.892)
C2': (-13.173,-3.370,13.720)
O2': (-13.962,-4.099,14.646)
N1: (-13.691,-3.933,8.224)
N2: (-14.983,-5.649,9.048)
N3: (-14.351,-3.985,10.506)
N7: (-12.443,-0.985,10.034)
N9: (-13.521,-2.035,11.689)
O5': (-11.529,0.375,13.994)
O3': (-11.443,-3.173,15.432)
OP2: (-10.926,2.039,12.296)
C3': (-12.147,-2.494,14.414)
C1': (-14.034,-2.317,13.028)
C5': (-12.277,-0.024,15.155)
O6: (-12.409,-2.317,7.249)
O4': (-13.939,-1.131,13.805)
C8: (-12.777,-0.949,11.295)
C2: (-14.336,-4.502,9.291)
C6: (-12.974,-2.739,8.268)
C5: (-13.003,-2.163,9.564)
C4: (-13.676,-2.821,10.570)
P: (-11.132,1.899,13.758)
C4': (-12.996,-1.325,14.892)
C2': (-13.173,-3.370,13.720)
O2': (-13.962,-4.099,14.646)
N1: (-13.691,-3.933,8.224)
N2: (-14.983,-5.649,9.048)
N3: (-14.351,-3.985,10.506)
N7: (-12.443,-0.985,10.034)
N9: (-13.521,-2.035,11.689)
O5': (-11.529,0.375,13.994)
O3': (-11.443,-3.173,15.432)
C4: (-18.474,-4.098,8.605)
N3: (-17.673,-3.387,7.749)
OP1: (-17.976,0.405,15.195)
OP2: (-20.145,0.569,13.814)
C2: (-16.973,-2.247,8.032)
C1': (-16.385,-0.540,9.654)
C3': (-16.304,1.706,10.329)
O5': (-17.904,0.772,12.704)
O4': (-15.969,-0.561,10.999)
C5': (-16.484,0.981,12.808)
P: (-18.722,0.152,13.927)
C4': (-15.814,0.808,11.463)
C2': (-17.166,0.758,9.499)
O2': (-17.292,1.100,8.131)
N1: (-17.116,-1.772,9.323)
O4: (-18.994,-5.144,8.209)
O2: (-16.271,-1.702,7.196)
C6: (-17.908,-2.431,10.233)
C5: (-18.574,-3.548,9.929)
O3': (-15.176,2.104,9.548)
N3: (-17.673,-3.387,7.749)
OP1: (-17.976,0.405,15.195)
OP2: (-20.145,0.569,13.814)
C2: (-16.973,-2.247,8.032)
C1': (-16.385,-0.540,9.654)
C3': (-16.304,1.706,10.329)
O5': (-17.904,0.772,12.704)
O4': (-15.969,-0.561,10.999)
C5': (-16.484,0.981,12.808)
P: (-18.722,0.152,13.927)
C4': (-15.814,0.808,11.463)
C2': (-17.166,0.758,9.499)
O2': (-17.292,1.100,8.131)
N1: (-17.116,-1.772,9.323)
O4: (-18.994,-5.144,8.209)
O2: (-16.271,-1.702,7.196)
C6: (-17.908,-2.431,10.233)
C5: (-18.574,-3.548,9.929)
O3': (-15.176,2.104,9.548)
Image (generated by PyMOL):