Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3DIY:A53:A51
Extra
PDB:
ATOM 1 O3' C A 52 -16.369 61.784 12.732 1.00 44.63 O
ATOM 2 P G A 53 -14.776 61.765 12.872 1.00 44.82 P
ATOM 3 OP1 G A 53 -14.440 61.422 14.274 1.00 44.89 O
ATOM 4 OP2 G A 53 -14.275 63.026 12.278 1.00 45.16 O
ATOM 5 O5' G A 53 -14.318 60.561 11.922 1.00 44.20 O
ATOM 6 C5' G A 53 -14.693 59.215 12.209 1.00 43.22 C
ATOM 7 C4' G A 53 -14.247 58.275 11.103 1.00 42.28 C
ATOM 8 O4' G A 53 -14.622 58.789 9.795 1.00 42.31 O
ATOM 9 C3' G A 53 -12.744 58.071 11.005 1.00 41.59 C
ATOM 10 O3' G A 53 -12.304 57.112 11.961 1.00 40.33 O
ATOM 11 C2' G A 53 -12.635 57.547 9.580 1.00 41.98 C
ATOM 12 O2' G A 53 -13.030 56.192 9.476 1.00 42.00 O
ATOM 13 C1' G A 53 -13.612 58.471 8.851 1.00 42.51 C
ATOM 14 N9 G A 53 -12.983 59.707 8.369 1.00 42.83 N
ATOM 15 C8 G A 53 -13.272 60.990 8.777 1.00 43.03 C
ATOM 16 N7 G A 53 -12.553 61.909 8.195 1.00 43.24 N
ATOM 17 C5 G A 53 -11.724 61.195 7.340 1.00 43.10 C
ATOM 18 C6 G A 53 -10.724 61.657 6.445 1.00 43.03 C
ATOM 19 O6 G A 53 -10.372 62.827 6.234 1.00 43.12 O
ATOM 20 N1 G A 53 -10.107 60.611 5.754 1.00 42.92 N
ATOM 21 C2 G A 53 -10.419 59.279 5.913 1.00 42.81 C
ATOM 22 N2 G A 53 -9.725 58.407 5.168 1.00 42.48 N
ATOM 23 N3 G A 53 -11.354 58.835 6.749 1.00 43.01 N
ATOM 24 C4 G A 53 -11.973 59.839 7.431 1.00 43.04 C
ATOM 25 P G A 54 -11.023 57.384 12.884 1.00 39.30 P
ATOM 26 OP1 G A 54 -11.089 56.420 14.001 1.00 39.19 O
ATOM 27 OP2 G A 54 -10.933 58.833 13.165 1.00 39.33 O
ATOM 28 O5' G A 54 -9.781 57.008 11.953 1.00 39.20 O
TER
ATOM 1 O3' A B 50 -18.338 56.230 8.052 1.00 38.12 O
ATOM 2 P U B 51 -19.136 57.249 7.099 1.00 39.07 P
ATOM 3 OP1 U B 51 -20.241 57.839 7.892 1.00 39.01 O
ATOM 4 OP2 U B 51 -19.444 56.571 5.820 1.00 38.81 O
ATOM 5 O5' U B 51 -18.048 58.382 6.806 1.00 39.85 O
ATOM 6 C5' U B 51 -17.665 59.292 7.836 1.00 41.47 C
ATOM 7 C4' U B 51 -16.890 60.461 7.259 1.00 42.63 C
ATOM 8 O4' U B 51 -15.634 59.964 6.732 1.00 43.00 O
ATOM 9 C3' U B 51 -17.607 61.218 6.128 1.00 43.42 C
ATOM 10 O3' U B 51 -17.959 62.615 6.403 1.00 44.39 O
ATOM 11 C2' U B 51 -16.713 61.015 4.896 1.00 43.35 C
ATOM 12 O2' U B 51 -16.531 62.193 4.134 1.00 43.67 O
ATOM 13 C1' U B 51 -15.375 60.529 5.462 1.00 43.41 C
ATOM 14 N1 U B 51 -14.677 59.522 4.566 1.00 43.65 N
ATOM 15 C2 U B 51 -13.471 59.855 3.961 1.00 43.63 C
ATOM 16 O2 U B 51 -12.908 60.926 4.109 1.00 43.97 O
ATOM 17 N3 U B 51 -12.929 58.875 3.160 1.00 43.30 N
ATOM 18 C4 U B 51 -13.457 57.622 2.900 1.00 43.16 C
ATOM 19 O4 U B 51 -12.854 56.856 2.158 1.00 43.14 O
ATOM 20 C5 U B 51 -14.710 57.341 3.557 1.00 43.19 C
ATOM 21 C6 U B 51 -15.257 58.279 4.344 1.00 43.46 C
ATOM 22 P C B 52 -17.150 63.677 7.307 1.00 45.10 P
ATOM 23 OP1 C B 52 -17.640 65.016 6.905 1.00 44.62 O
ATOM 24 OP2 C B 52 -15.693 63.389 7.260 1.00 44.89 O
ATOM 25 O5' C B 52 -17.693 63.391 8.788 1.00 44.94 O
TER
ATOM 2 P G A 53 -14.776 61.765 12.872 1.00 44.82 P
ATOM 3 OP1 G A 53 -14.440 61.422 14.274 1.00 44.89 O
ATOM 4 OP2 G A 53 -14.275 63.026 12.278 1.00 45.16 O
ATOM 5 O5' G A 53 -14.318 60.561 11.922 1.00 44.20 O
ATOM 6 C5' G A 53 -14.693 59.215 12.209 1.00 43.22 C
ATOM 7 C4' G A 53 -14.247 58.275 11.103 1.00 42.28 C
ATOM 8 O4' G A 53 -14.622 58.789 9.795 1.00 42.31 O
ATOM 9 C3' G A 53 -12.744 58.071 11.005 1.00 41.59 C
ATOM 10 O3' G A 53 -12.304 57.112 11.961 1.00 40.33 O
ATOM 11 C2' G A 53 -12.635 57.547 9.580 1.00 41.98 C
ATOM 12 O2' G A 53 -13.030 56.192 9.476 1.00 42.00 O
ATOM 13 C1' G A 53 -13.612 58.471 8.851 1.00 42.51 C
ATOM 14 N9 G A 53 -12.983 59.707 8.369 1.00 42.83 N
ATOM 15 C8 G A 53 -13.272 60.990 8.777 1.00 43.03 C
ATOM 16 N7 G A 53 -12.553 61.909 8.195 1.00 43.24 N
ATOM 17 C5 G A 53 -11.724 61.195 7.340 1.00 43.10 C
ATOM 18 C6 G A 53 -10.724 61.657 6.445 1.00 43.03 C
ATOM 19 O6 G A 53 -10.372 62.827 6.234 1.00 43.12 O
ATOM 20 N1 G A 53 -10.107 60.611 5.754 1.00 42.92 N
ATOM 21 C2 G A 53 -10.419 59.279 5.913 1.00 42.81 C
ATOM 22 N2 G A 53 -9.725 58.407 5.168 1.00 42.48 N
ATOM 23 N3 G A 53 -11.354 58.835 6.749 1.00 43.01 N
ATOM 24 C4 G A 53 -11.973 59.839 7.431 1.00 43.04 C
ATOM 25 P G A 54 -11.023 57.384 12.884 1.00 39.30 P
ATOM 26 OP1 G A 54 -11.089 56.420 14.001 1.00 39.19 O
ATOM 27 OP2 G A 54 -10.933 58.833 13.165 1.00 39.33 O
ATOM 28 O5' G A 54 -9.781 57.008 11.953 1.00 39.20 O
TER
ATOM 1 O3' A B 50 -18.338 56.230 8.052 1.00 38.12 O
ATOM 2 P U B 51 -19.136 57.249 7.099 1.00 39.07 P
ATOM 3 OP1 U B 51 -20.241 57.839 7.892 1.00 39.01 O
ATOM 4 OP2 U B 51 -19.444 56.571 5.820 1.00 38.81 O
ATOM 5 O5' U B 51 -18.048 58.382 6.806 1.00 39.85 O
ATOM 6 C5' U B 51 -17.665 59.292 7.836 1.00 41.47 C
ATOM 7 C4' U B 51 -16.890 60.461 7.259 1.00 42.63 C
ATOM 8 O4' U B 51 -15.634 59.964 6.732 1.00 43.00 O
ATOM 9 C3' U B 51 -17.607 61.218 6.128 1.00 43.42 C
ATOM 10 O3' U B 51 -17.959 62.615 6.403 1.00 44.39 O
ATOM 11 C2' U B 51 -16.713 61.015 4.896 1.00 43.35 C
ATOM 12 O2' U B 51 -16.531 62.193 4.134 1.00 43.67 O
ATOM 13 C1' U B 51 -15.375 60.529 5.462 1.00 43.41 C
ATOM 14 N1 U B 51 -14.677 59.522 4.566 1.00 43.65 N
ATOM 15 C2 U B 51 -13.471 59.855 3.961 1.00 43.63 C
ATOM 16 O2 U B 51 -12.908 60.926 4.109 1.00 43.97 O
ATOM 17 N3 U B 51 -12.929 58.875 3.160 1.00 43.30 N
ATOM 18 C4 U B 51 -13.457 57.622 2.900 1.00 43.16 C
ATOM 19 O4 U B 51 -12.854 56.856 2.158 1.00 43.14 O
ATOM 20 C5 U B 51 -14.710 57.341 3.557 1.00 43.19 C
ATOM 21 C6 U B 51 -15.257 58.279 4.344 1.00 43.46 C
ATOM 22 P C B 52 -17.150 63.677 7.307 1.00 45.10 P
ATOM 23 OP1 C B 52 -17.640 65.016 6.905 1.00 44.62 O
ATOM 24 OP2 C B 52 -15.693 63.389 7.260 1.00 44.89 O
ATOM 25 O5' C B 52 -17.693 63.391 8.788 1.00 44.94 O
TER
Atoms:
OP1: (-14.440,61.422,14.274)
OP2: (-14.275,63.026,12.278)
C3': (-12.744,58.071,11.005)
C1': (-13.612,58.471,8.851)
C5': (-14.693,59.215,12.209)
O6: (-10.372,62.827,6.234)
O4': (-14.622,58.789,9.795)
C8: (-13.272,60.990,8.777)
C2: (-10.419,59.279,5.913)
C6: (-10.724,61.657,6.445)
C5: (-11.724,61.195,7.340)
C4: (-11.973,59.839,7.431)
P: (-14.776,61.765,12.872)
C4': (-14.247,58.275,11.103)
C2': (-12.635,57.547,9.580)
O2': (-13.030,56.192,9.476)
N1: (-10.107,60.611,5.754)
N2: (-9.725,58.407,5.168)
N3: (-11.354,58.835,6.749)
N7: (-12.553,61.909,8.195)
N9: (-12.983,59.707,8.369)
O5': (-14.318,60.561,11.922)
O3': (-12.304,57.112,11.961)
OP2: (-14.275,63.026,12.278)
C3': (-12.744,58.071,11.005)
C1': (-13.612,58.471,8.851)
C5': (-14.693,59.215,12.209)
O6: (-10.372,62.827,6.234)
O4': (-14.622,58.789,9.795)
C8: (-13.272,60.990,8.777)
C2: (-10.419,59.279,5.913)
C6: (-10.724,61.657,6.445)
C5: (-11.724,61.195,7.340)
C4: (-11.973,59.839,7.431)
P: (-14.776,61.765,12.872)
C4': (-14.247,58.275,11.103)
C2': (-12.635,57.547,9.580)
O2': (-13.030,56.192,9.476)
N1: (-10.107,60.611,5.754)
N2: (-9.725,58.407,5.168)
N3: (-11.354,58.835,6.749)
N7: (-12.553,61.909,8.195)
N9: (-12.983,59.707,8.369)
O5': (-14.318,60.561,11.922)
O3': (-12.304,57.112,11.961)
C4: (-13.457,57.622,2.900)
N3: (-12.929,58.875,3.160)
OP1: (-20.241,57.839,7.892)
OP2: (-19.444,56.571,5.820)
C2: (-13.471,59.855,3.961)
C1': (-15.375,60.529,5.462)
C3': (-17.607,61.218,6.128)
O5': (-18.048,58.382,6.806)
O4': (-15.634,59.964,6.732)
C5': (-17.665,59.292,7.836)
P: (-19.136,57.249,7.099)
C4': (-16.890,60.461,7.259)
C2': (-16.713,61.015,4.896)
O2': (-16.531,62.193,4.134)
N1: (-14.677,59.522,4.566)
O4: (-12.854,56.856,2.158)
O2: (-12.908,60.926,4.109)
C6: (-15.257,58.279,4.344)
C5: (-14.710,57.341,3.557)
O3': (-17.959,62.615,6.403)
N3: (-12.929,58.875,3.160)
OP1: (-20.241,57.839,7.892)
OP2: (-19.444,56.571,5.820)
C2: (-13.471,59.855,3.961)
C1': (-15.375,60.529,5.462)
C3': (-17.607,61.218,6.128)
O5': (-18.048,58.382,6.806)
O4': (-15.634,59.964,6.732)
C5': (-17.665,59.292,7.836)
P: (-19.136,57.249,7.099)
C4': (-16.890,60.461,7.259)
C2': (-16.713,61.015,4.896)
O2': (-16.531,62.193,4.134)
N1: (-14.677,59.522,4.566)
O4: (-12.854,56.856,2.158)
O2: (-12.908,60.926,4.109)
C6: (-15.257,58.279,4.344)
C5: (-14.710,57.341,3.557)
O3': (-17.959,62.615,6.403)
Image (generated by PyMOL):