Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3DIL:A53:A51
Extra
PDB:
ATOM 1 O3' C A 52 -16.676 62.107 12.160 1.00 25.24 O
ATOM 2 P G A 53 -15.079 62.144 12.280 1.00 25.15 P
ATOM 3 OP1 G A 53 -14.740 61.929 13.704 1.00 25.09 O
ATOM 4 OP2 G A 53 -14.591 63.358 11.587 1.00 25.20 O
ATOM 5 O5' G A 53 -14.601 60.877 11.424 1.00 25.07 O
ATOM 6 C5' G A 53 -14.977 59.552 11.791 1.00 24.84 C
ATOM 7 C4' G A 53 -14.380 58.532 10.840 1.00 24.69 C
ATOM 8 O4' G A 53 -14.656 58.886 9.458 1.00 24.51 O
ATOM 9 C3' G A 53 -12.866 58.420 10.888 1.00 24.58 C
ATOM 10 O3' G A 53 -12.447 57.615 11.984 1.00 24.75 O
ATOM 11 C2' G A 53 -12.585 57.764 9.541 1.00 24.48 C
ATOM 12 O2' G A 53 -12.865 56.376 9.536 1.00 24.15 O
ATOM 13 C1' G A 53 -13.551 58.531 8.641 1.00 24.39 C
ATOM 14 N9 G A 53 -12.951 59.741 8.065 1.00 24.41 N
ATOM 15 C8 G A 53 -13.260 61.045 8.376 1.00 24.43 C
ATOM 16 N7 G A 53 -12.565 61.926 7.712 1.00 24.44 N
ATOM 17 C5 G A 53 -11.731 61.162 6.906 1.00 24.46 C
ATOM 18 C6 G A 53 -10.747 61.568 5.965 1.00 24.36 C
ATOM 19 O6 G A 53 -10.418 62.721 5.655 1.00 24.30 O
ATOM 20 N1 G A 53 -10.121 60.479 5.354 1.00 24.28 N
ATOM 21 C2 G A 53 -10.412 59.159 5.624 1.00 24.29 C
ATOM 22 N2 G A 53 -9.712 58.241 4.943 1.00 24.26 N
ATOM 23 N3 G A 53 -11.330 58.768 6.504 1.00 24.35 N
ATOM 24 C4 G A 53 -11.954 59.815 7.110 1.00 24.39 C
ATOM 25 P G A 54 -11.093 57.966 12.766 1.00 25.14 P
ATOM 26 OP1 G A 54 -10.954 56.997 13.876 1.00 24.79 O
ATOM 27 OP2 G A 54 -11.090 59.418 13.058 1.00 24.99 O
ATOM 28 O5' G A 54 -9.952 57.684 11.680 1.00 25.23 O
TER
ATOM 1 O3' A B 50 -18.618 56.334 7.836 1.00 22.36 O
ATOM 2 P U B 51 -19.328 57.436 6.917 1.00 23.58 P
ATOM 3 OP1 U B 51 -20.360 58.107 7.740 1.00 23.55 O
ATOM 4 OP2 U B 51 -19.724 56.808 5.635 1.00 23.47 O
ATOM 5 O5' U B 51 -18.135 58.458 6.607 1.00 24.00 O
ATOM 6 C5' U B 51 -17.818 59.508 7.517 1.00 24.94 C
ATOM 7 C4' U B 51 -16.915 60.538 6.866 1.00 25.59 C
ATOM 8 O4' U B 51 -15.720 59.871 6.395 1.00 25.56 O
ATOM 9 C3' U B 51 -17.516 61.272 5.659 1.00 25.93 C
ATOM 10 O3' U B 51 -17.982 62.624 5.938 1.00 26.70 O
ATOM 11 C2' U B 51 -16.452 61.193 4.553 1.00 25.84 C
ATOM 12 O2' U B 51 -16.048 62.456 4.056 1.00 25.99 O
ATOM 13 C1' U B 51 -15.266 60.480 5.202 1.00 25.66 C
ATOM 14 N1 U B 51 -14.646 59.436 4.311 1.00 25.45 N
ATOM 15 C2 U B 51 -13.440 59.703 3.682 1.00 25.27 C
ATOM 16 O2 U B 51 -12.826 60.748 3.805 1.00 25.13 O
ATOM 17 N3 U B 51 -12.963 58.686 2.886 1.00 25.34 N
ATOM 18 C4 U B 51 -13.557 57.456 2.657 1.00 25.40 C
ATOM 19 O4 U B 51 -13.008 56.646 1.918 1.00 25.55 O
ATOM 20 C5 U B 51 -14.810 57.249 3.342 1.00 25.39 C
ATOM 21 C6 U B 51 -15.295 58.223 4.124 1.00 25.50 C
ATOM 22 P C B 52 -17.240 63.739 6.830 1.00 27.04 P
ATOM 23 OP1 C B 52 -17.683 65.055 6.321 1.00 26.87 O
ATOM 24 OP2 C B 52 -15.790 63.441 6.917 1.00 26.82 O
ATOM 25 O5' C B 52 -17.918 63.535 8.264 1.00 26.66 O
TER
ATOM 2 P G A 53 -15.079 62.144 12.280 1.00 25.15 P
ATOM 3 OP1 G A 53 -14.740 61.929 13.704 1.00 25.09 O
ATOM 4 OP2 G A 53 -14.591 63.358 11.587 1.00 25.20 O
ATOM 5 O5' G A 53 -14.601 60.877 11.424 1.00 25.07 O
ATOM 6 C5' G A 53 -14.977 59.552 11.791 1.00 24.84 C
ATOM 7 C4' G A 53 -14.380 58.532 10.840 1.00 24.69 C
ATOM 8 O4' G A 53 -14.656 58.886 9.458 1.00 24.51 O
ATOM 9 C3' G A 53 -12.866 58.420 10.888 1.00 24.58 C
ATOM 10 O3' G A 53 -12.447 57.615 11.984 1.00 24.75 O
ATOM 11 C2' G A 53 -12.585 57.764 9.541 1.00 24.48 C
ATOM 12 O2' G A 53 -12.865 56.376 9.536 1.00 24.15 O
ATOM 13 C1' G A 53 -13.551 58.531 8.641 1.00 24.39 C
ATOM 14 N9 G A 53 -12.951 59.741 8.065 1.00 24.41 N
ATOM 15 C8 G A 53 -13.260 61.045 8.376 1.00 24.43 C
ATOM 16 N7 G A 53 -12.565 61.926 7.712 1.00 24.44 N
ATOM 17 C5 G A 53 -11.731 61.162 6.906 1.00 24.46 C
ATOM 18 C6 G A 53 -10.747 61.568 5.965 1.00 24.36 C
ATOM 19 O6 G A 53 -10.418 62.721 5.655 1.00 24.30 O
ATOM 20 N1 G A 53 -10.121 60.479 5.354 1.00 24.28 N
ATOM 21 C2 G A 53 -10.412 59.159 5.624 1.00 24.29 C
ATOM 22 N2 G A 53 -9.712 58.241 4.943 1.00 24.26 N
ATOM 23 N3 G A 53 -11.330 58.768 6.504 1.00 24.35 N
ATOM 24 C4 G A 53 -11.954 59.815 7.110 1.00 24.39 C
ATOM 25 P G A 54 -11.093 57.966 12.766 1.00 25.14 P
ATOM 26 OP1 G A 54 -10.954 56.997 13.876 1.00 24.79 O
ATOM 27 OP2 G A 54 -11.090 59.418 13.058 1.00 24.99 O
ATOM 28 O5' G A 54 -9.952 57.684 11.680 1.00 25.23 O
TER
ATOM 1 O3' A B 50 -18.618 56.334 7.836 1.00 22.36 O
ATOM 2 P U B 51 -19.328 57.436 6.917 1.00 23.58 P
ATOM 3 OP1 U B 51 -20.360 58.107 7.740 1.00 23.55 O
ATOM 4 OP2 U B 51 -19.724 56.808 5.635 1.00 23.47 O
ATOM 5 O5' U B 51 -18.135 58.458 6.607 1.00 24.00 O
ATOM 6 C5' U B 51 -17.818 59.508 7.517 1.00 24.94 C
ATOM 7 C4' U B 51 -16.915 60.538 6.866 1.00 25.59 C
ATOM 8 O4' U B 51 -15.720 59.871 6.395 1.00 25.56 O
ATOM 9 C3' U B 51 -17.516 61.272 5.659 1.00 25.93 C
ATOM 10 O3' U B 51 -17.982 62.624 5.938 1.00 26.70 O
ATOM 11 C2' U B 51 -16.452 61.193 4.553 1.00 25.84 C
ATOM 12 O2' U B 51 -16.048 62.456 4.056 1.00 25.99 O
ATOM 13 C1' U B 51 -15.266 60.480 5.202 1.00 25.66 C
ATOM 14 N1 U B 51 -14.646 59.436 4.311 1.00 25.45 N
ATOM 15 C2 U B 51 -13.440 59.703 3.682 1.00 25.27 C
ATOM 16 O2 U B 51 -12.826 60.748 3.805 1.00 25.13 O
ATOM 17 N3 U B 51 -12.963 58.686 2.886 1.00 25.34 N
ATOM 18 C4 U B 51 -13.557 57.456 2.657 1.00 25.40 C
ATOM 19 O4 U B 51 -13.008 56.646 1.918 1.00 25.55 O
ATOM 20 C5 U B 51 -14.810 57.249 3.342 1.00 25.39 C
ATOM 21 C6 U B 51 -15.295 58.223 4.124 1.00 25.50 C
ATOM 22 P C B 52 -17.240 63.739 6.830 1.00 27.04 P
ATOM 23 OP1 C B 52 -17.683 65.055 6.321 1.00 26.87 O
ATOM 24 OP2 C B 52 -15.790 63.441 6.917 1.00 26.82 O
ATOM 25 O5' C B 52 -17.918 63.535 8.264 1.00 26.66 O
TER
Atoms:
OP1: (-14.740,61.929,13.704)
OP2: (-14.591,63.358,11.587)
C3': (-12.866,58.420,10.888)
C1': (-13.551,58.531,8.641)
C5': (-14.977,59.552,11.791)
O6: (-10.418,62.721,5.655)
O4': (-14.656,58.886,9.458)
C8: (-13.260,61.045,8.376)
C2: (-10.412,59.159,5.624)
C6: (-10.747,61.568,5.965)
C5: (-11.731,61.162,6.906)
C4: (-11.954,59.815,7.110)
P: (-15.079,62.144,12.280)
C4': (-14.380,58.532,10.840)
C2': (-12.585,57.764,9.541)
O2': (-12.865,56.376,9.536)
N1: (-10.121,60.479,5.354)
N2: (-9.712,58.241,4.943)
N3: (-11.330,58.768,6.504)
N7: (-12.565,61.926,7.712)
N9: (-12.951,59.741,8.065)
O5': (-14.601,60.877,11.424)
O3': (-12.447,57.615,11.984)
OP2: (-14.591,63.358,11.587)
C3': (-12.866,58.420,10.888)
C1': (-13.551,58.531,8.641)
C5': (-14.977,59.552,11.791)
O6: (-10.418,62.721,5.655)
O4': (-14.656,58.886,9.458)
C8: (-13.260,61.045,8.376)
C2: (-10.412,59.159,5.624)
C6: (-10.747,61.568,5.965)
C5: (-11.731,61.162,6.906)
C4: (-11.954,59.815,7.110)
P: (-15.079,62.144,12.280)
C4': (-14.380,58.532,10.840)
C2': (-12.585,57.764,9.541)
O2': (-12.865,56.376,9.536)
N1: (-10.121,60.479,5.354)
N2: (-9.712,58.241,4.943)
N3: (-11.330,58.768,6.504)
N7: (-12.565,61.926,7.712)
N9: (-12.951,59.741,8.065)
O5': (-14.601,60.877,11.424)
O3': (-12.447,57.615,11.984)
C4: (-13.557,57.456,2.657)
N3: (-12.963,58.686,2.886)
OP1: (-20.360,58.107,7.740)
OP2: (-19.724,56.808,5.635)
C2: (-13.440,59.703,3.682)
C1': (-15.266,60.480,5.202)
C3': (-17.516,61.272,5.659)
O5': (-18.135,58.458,6.607)
O4': (-15.720,59.871,6.395)
C5': (-17.818,59.508,7.517)
P: (-19.328,57.436,6.917)
C4': (-16.915,60.538,6.866)
C2': (-16.452,61.193,4.553)
O2': (-16.048,62.456,4.056)
N1: (-14.646,59.436,4.311)
O4: (-13.008,56.646,1.918)
O2: (-12.826,60.748,3.805)
C6: (-15.295,58.223,4.124)
C5: (-14.810,57.249,3.342)
O3': (-17.982,62.624,5.938)
N3: (-12.963,58.686,2.886)
OP1: (-20.360,58.107,7.740)
OP2: (-19.724,56.808,5.635)
C2: (-13.440,59.703,3.682)
C1': (-15.266,60.480,5.202)
C3': (-17.516,61.272,5.659)
O5': (-18.135,58.458,6.607)
O4': (-15.720,59.871,6.395)
C5': (-17.818,59.508,7.517)
P: (-19.328,57.436,6.917)
C4': (-16.915,60.538,6.866)
C2': (-16.452,61.193,4.553)
O2': (-16.048,62.456,4.056)
N1: (-14.646,59.436,4.311)
O4: (-13.008,56.646,1.918)
O2: (-12.826,60.748,3.805)
C6: (-15.295,58.223,4.124)
C5: (-14.810,57.249,3.342)
O3': (-17.982,62.624,5.938)
Image (generated by PyMOL):