Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3D2G:B41:B39
Extra
PDB:
ATOM 1 O3' U A 40 -11.638 -58.765 13.984 1.00 75.09 O
ATOM 2 P G A 41 -10.801 -57.385 13.988 1.00 74.82 P
ATOM 3 OP1 G A 41 -10.070 -57.358 12.693 1.00 61.15 O
ATOM 4 OP2 G A 41 -10.017 -57.282 15.240 1.00 74.05 O
ATOM 5 O5' G A 41 -11.920 -56.224 13.986 1.00 65.40 O
ATOM 6 C5' G A 41 -12.614 -55.831 12.792 1.00 53.14 C
ATOM 7 C4' G A 41 -13.192 -54.450 13.051 1.00 55.83 C
ATOM 8 O4' G A 41 -14.106 -54.507 14.168 1.00 54.82 O
ATOM 9 C3' G A 41 -12.200 -53.384 13.523 1.00 48.16 C
ATOM 10 O3' G A 41 -11.483 -52.906 12.384 1.00 38.99 O
ATOM 11 C2' G A 41 -13.172 -52.364 14.132 1.00 51.02 C
ATOM 12 O2' G A 41 -14.074 -51.766 13.217 1.00 47.16 O
ATOM 13 C1' G A 41 -14.037 -53.304 14.936 1.00 50.14 C
ATOM 14 N9 G A 41 -13.527 -53.592 16.275 1.00 50.67 N
ATOM 15 C8 G A 41 -12.761 -54.642 16.686 1.00 49.75 C
ATOM 16 N7 G A 41 -12.462 -54.581 17.951 1.00 47.72 N
ATOM 17 C5 G A 41 -13.071 -53.456 18.403 1.00 46.23 C
ATOM 18 C6 G A 41 -13.099 -52.919 19.684 1.00 47.30 C
ATOM 19 O6 G A 41 -12.538 -53.431 20.663 1.00 44.37 O
ATOM 20 N1 G A 41 -13.838 -51.721 19.724 1.00 42.64 N
ATOM 21 C2 G A 41 -14.469 -51.143 18.646 1.00 45.46 C
ATOM 22 N2 G A 41 -15.152 -49.962 18.781 1.00 42.68 N
ATOM 23 N3 G A 41 -14.430 -51.673 17.434 1.00 48.05 N
ATOM 24 C4 G A 41 -13.735 -52.823 17.396 1.00 47.63 C
ATOM 25 P A A 42 -10.218 -51.972 12.558 1.00 52.71 P
ATOM 26 OP1 A A 42 -9.018 -52.354 11.833 1.00 41.85 O
ATOM 27 OP2 A A 42 -10.203 -51.391 13.931 1.00 53.00 O
ATOM 28 O5' A A 42 -10.737 -50.730 11.711 1.00 51.67 O
TER
ATOM 1 O3' U B 38 -18.310 -54.362 14.304 1.00 62.31 O
ATOM 2 P U B 39 -18.768 -55.902 14.188 1.00 62.50 P
ATOM 3 OP1 U B 39 -18.090 -56.506 13.023 1.00 52.53 O
ATOM 4 OP2 U B 39 -20.248 -55.979 14.264 1.00 68.03 O
ATOM 5 O5' U B 39 -17.960 -56.431 15.479 1.00 55.31 O
ATOM 6 C5' U B 39 -16.638 -56.834 15.136 1.00 55.17 C
ATOM 7 C4' U B 39 -15.807 -56.523 16.336 1.00 58.19 C
ATOM 8 O4' U B 39 -16.149 -55.168 16.722 1.00 60.11 O
ATOM 9 C3' U B 39 -16.200 -57.358 17.543 1.00 59.71 C
ATOM 10 O3' U B 39 -15.064 -57.745 18.314 1.00 64.53 O
ATOM 11 C2' U B 39 -17.158 -56.452 18.289 1.00 58.88 C
ATOM 12 O2' U B 39 -17.318 -56.748 19.657 1.00 65.69 O
ATOM 13 C1' U B 39 -16.332 -55.186 18.121 1.00 57.67 C
ATOM 14 N1 U B 39 -17.026 -53.992 18.522 1.00 51.50 N
ATOM 15 C2 U B 39 -16.772 -53.520 19.783 1.00 51.91 C
ATOM 16 O2 U B 39 -16.004 -54.081 20.549 1.00 52.65 O
ATOM 17 N3 U B 39 -17.472 -52.417 20.118 1.00 51.48 N
ATOM 18 C4 U B 39 -18.364 -51.720 19.319 1.00 55.53 C
ATOM 19 O4 U B 39 -18.904 -50.681 19.752 1.00 63.27 O
ATOM 20 C5 U B 39 -18.572 -52.266 18.002 1.00 56.12 C
ATOM 21 C6 U B 39 -17.901 -53.368 17.661 1.00 57.80 C
ATOM 22 P U B 40 -14.903 -59.332 18.521 1.00 79.12 P
ATOM 23 OP1 U B 40 -16.232 -59.972 18.367 1.00 74.30 O
ATOM 24 OP2 U B 40 -14.106 -59.450 19.755 1.00 77.40 O
ATOM 25 O5' U B 40 -14.035 -59.835 17.275 1.00 73.96 O
TER
ATOM 2 P G A 41 -10.801 -57.385 13.988 1.00 74.82 P
ATOM 3 OP1 G A 41 -10.070 -57.358 12.693 1.00 61.15 O
ATOM 4 OP2 G A 41 -10.017 -57.282 15.240 1.00 74.05 O
ATOM 5 O5' G A 41 -11.920 -56.224 13.986 1.00 65.40 O
ATOM 6 C5' G A 41 -12.614 -55.831 12.792 1.00 53.14 C
ATOM 7 C4' G A 41 -13.192 -54.450 13.051 1.00 55.83 C
ATOM 8 O4' G A 41 -14.106 -54.507 14.168 1.00 54.82 O
ATOM 9 C3' G A 41 -12.200 -53.384 13.523 1.00 48.16 C
ATOM 10 O3' G A 41 -11.483 -52.906 12.384 1.00 38.99 O
ATOM 11 C2' G A 41 -13.172 -52.364 14.132 1.00 51.02 C
ATOM 12 O2' G A 41 -14.074 -51.766 13.217 1.00 47.16 O
ATOM 13 C1' G A 41 -14.037 -53.304 14.936 1.00 50.14 C
ATOM 14 N9 G A 41 -13.527 -53.592 16.275 1.00 50.67 N
ATOM 15 C8 G A 41 -12.761 -54.642 16.686 1.00 49.75 C
ATOM 16 N7 G A 41 -12.462 -54.581 17.951 1.00 47.72 N
ATOM 17 C5 G A 41 -13.071 -53.456 18.403 1.00 46.23 C
ATOM 18 C6 G A 41 -13.099 -52.919 19.684 1.00 47.30 C
ATOM 19 O6 G A 41 -12.538 -53.431 20.663 1.00 44.37 O
ATOM 20 N1 G A 41 -13.838 -51.721 19.724 1.00 42.64 N
ATOM 21 C2 G A 41 -14.469 -51.143 18.646 1.00 45.46 C
ATOM 22 N2 G A 41 -15.152 -49.962 18.781 1.00 42.68 N
ATOM 23 N3 G A 41 -14.430 -51.673 17.434 1.00 48.05 N
ATOM 24 C4 G A 41 -13.735 -52.823 17.396 1.00 47.63 C
ATOM 25 P A A 42 -10.218 -51.972 12.558 1.00 52.71 P
ATOM 26 OP1 A A 42 -9.018 -52.354 11.833 1.00 41.85 O
ATOM 27 OP2 A A 42 -10.203 -51.391 13.931 1.00 53.00 O
ATOM 28 O5' A A 42 -10.737 -50.730 11.711 1.00 51.67 O
TER
ATOM 1 O3' U B 38 -18.310 -54.362 14.304 1.00 62.31 O
ATOM 2 P U B 39 -18.768 -55.902 14.188 1.00 62.50 P
ATOM 3 OP1 U B 39 -18.090 -56.506 13.023 1.00 52.53 O
ATOM 4 OP2 U B 39 -20.248 -55.979 14.264 1.00 68.03 O
ATOM 5 O5' U B 39 -17.960 -56.431 15.479 1.00 55.31 O
ATOM 6 C5' U B 39 -16.638 -56.834 15.136 1.00 55.17 C
ATOM 7 C4' U B 39 -15.807 -56.523 16.336 1.00 58.19 C
ATOM 8 O4' U B 39 -16.149 -55.168 16.722 1.00 60.11 O
ATOM 9 C3' U B 39 -16.200 -57.358 17.543 1.00 59.71 C
ATOM 10 O3' U B 39 -15.064 -57.745 18.314 1.00 64.53 O
ATOM 11 C2' U B 39 -17.158 -56.452 18.289 1.00 58.88 C
ATOM 12 O2' U B 39 -17.318 -56.748 19.657 1.00 65.69 O
ATOM 13 C1' U B 39 -16.332 -55.186 18.121 1.00 57.67 C
ATOM 14 N1 U B 39 -17.026 -53.992 18.522 1.00 51.50 N
ATOM 15 C2 U B 39 -16.772 -53.520 19.783 1.00 51.91 C
ATOM 16 O2 U B 39 -16.004 -54.081 20.549 1.00 52.65 O
ATOM 17 N3 U B 39 -17.472 -52.417 20.118 1.00 51.48 N
ATOM 18 C4 U B 39 -18.364 -51.720 19.319 1.00 55.53 C
ATOM 19 O4 U B 39 -18.904 -50.681 19.752 1.00 63.27 O
ATOM 20 C5 U B 39 -18.572 -52.266 18.002 1.00 56.12 C
ATOM 21 C6 U B 39 -17.901 -53.368 17.661 1.00 57.80 C
ATOM 22 P U B 40 -14.903 -59.332 18.521 1.00 79.12 P
ATOM 23 OP1 U B 40 -16.232 -59.972 18.367 1.00 74.30 O
ATOM 24 OP2 U B 40 -14.106 -59.450 19.755 1.00 77.40 O
ATOM 25 O5' U B 40 -14.035 -59.835 17.275 1.00 73.96 O
TER
Atoms:
OP1: (-10.070,-57.358,12.693)
OP2: (-10.017,-57.282,15.240)
C3': (-12.200,-53.384,13.523)
C1': (-14.037,-53.304,14.936)
C5': (-12.614,-55.831,12.792)
O6: (-12.538,-53.431,20.663)
O4': (-14.106,-54.507,14.168)
C8: (-12.761,-54.642,16.686)
C2: (-14.469,-51.143,18.646)
C6: (-13.099,-52.919,19.684)
C5: (-13.071,-53.456,18.403)
C4: (-13.735,-52.823,17.396)
P: (-10.801,-57.385,13.988)
C4': (-13.192,-54.450,13.051)
C2': (-13.172,-52.364,14.132)
O2': (-14.074,-51.766,13.217)
N1: (-13.838,-51.721,19.724)
N2: (-15.152,-49.962,18.781)
N3: (-14.430,-51.673,17.434)
N7: (-12.462,-54.581,17.951)
N9: (-13.527,-53.592,16.275)
O5': (-11.920,-56.224,13.986)
O3': (-11.483,-52.906,12.384)
OP2: (-10.017,-57.282,15.240)
C3': (-12.200,-53.384,13.523)
C1': (-14.037,-53.304,14.936)
C5': (-12.614,-55.831,12.792)
O6: (-12.538,-53.431,20.663)
O4': (-14.106,-54.507,14.168)
C8: (-12.761,-54.642,16.686)
C2: (-14.469,-51.143,18.646)
C6: (-13.099,-52.919,19.684)
C5: (-13.071,-53.456,18.403)
C4: (-13.735,-52.823,17.396)
P: (-10.801,-57.385,13.988)
C4': (-13.192,-54.450,13.051)
C2': (-13.172,-52.364,14.132)
O2': (-14.074,-51.766,13.217)
N1: (-13.838,-51.721,19.724)
N2: (-15.152,-49.962,18.781)
N3: (-14.430,-51.673,17.434)
N7: (-12.462,-54.581,17.951)
N9: (-13.527,-53.592,16.275)
O5': (-11.920,-56.224,13.986)
O3': (-11.483,-52.906,12.384)
C4: (-18.364,-51.720,19.319)
N3: (-17.472,-52.417,20.118)
OP1: (-18.090,-56.506,13.023)
OP2: (-20.248,-55.979,14.264)
C2: (-16.772,-53.520,19.783)
C1': (-16.332,-55.186,18.121)
C3': (-16.200,-57.358,17.543)
O5': (-17.960,-56.431,15.479)
O4': (-16.149,-55.168,16.722)
C5': (-16.638,-56.834,15.136)
P: (-18.768,-55.902,14.188)
C4': (-15.807,-56.523,16.336)
C2': (-17.158,-56.452,18.289)
O2': (-17.318,-56.748,19.657)
N1: (-17.026,-53.992,18.522)
O4: (-18.904,-50.681,19.752)
O2: (-16.004,-54.081,20.549)
C6: (-17.901,-53.368,17.661)
C5: (-18.572,-52.266,18.002)
O3': (-15.064,-57.745,18.314)
N3: (-17.472,-52.417,20.118)
OP1: (-18.090,-56.506,13.023)
OP2: (-20.248,-55.979,14.264)
C2: (-16.772,-53.520,19.783)
C1': (-16.332,-55.186,18.121)
C3': (-16.200,-57.358,17.543)
O5': (-17.960,-56.431,15.479)
O4': (-16.149,-55.168,16.722)
C5': (-16.638,-56.834,15.136)
P: (-18.768,-55.902,14.188)
C4': (-15.807,-56.523,16.336)
C2': (-17.158,-56.452,18.289)
O2': (-17.318,-56.748,19.657)
N1: (-17.026,-53.992,18.522)
O4: (-18.904,-50.681,19.752)
O2: (-16.004,-54.081,20.549)
C6: (-17.901,-53.368,17.661)
C5: (-18.572,-52.266,18.002)
O3': (-15.064,-57.745,18.314)
Image (generated by PyMOL):