Doublet info:
Details
Nucleotide types:
GC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3R8S:A1472:A1505
Extra
PDB:
ATOM 1 O3' G A1471 -8.509 -7.405 11.161 1.00 9.68 O
ATOM 2 P G A1472 -8.712 -6.062 12.000 1.00 9.76 P
ATOM 3 OP1 G A1472 -9.585 -5.168 11.176 1.00 9.76 O
ATOM 4 OP2 G A1472 -7.365 -5.580 12.378 1.00 9.76 O
ATOM 5 O5' G A1472 -9.482 -6.567 13.311 1.00 9.76 O
ATOM 6 C5' G A1472 -10.788 -7.116 13.231 1.00 9.76 C
ATOM 7 C4' G A1472 -11.205 -7.740 14.533 1.00 9.76 C
ATOM 8 O4' G A1472 -10.217 -8.721 14.928 1.00 9.76 O
ATOM 9 C3' G A1472 -11.285 -6.800 15.714 1.00 9.76 C
ATOM 10 O3' G A1472 -12.505 -6.101 15.783 1.00 9.76 O
ATOM 11 C2' G A1472 -11.034 -7.720 16.895 1.00 9.76 C
ATOM 12 O2' G A1472 -12.184 -8.487 17.204 1.00 9.76 O
ATOM 13 C1' G A1472 -9.978 -8.641 16.311 1.00 9.76 C
ATOM 14 N9 G A1472 -8.610 -8.109 16.503 1.00 9.72 N
ATOM 15 C8 G A1472 -7.784 -7.583 15.513 1.00 9.72 C
ATOM 16 N7 G A1472 -6.615 -7.180 15.967 1.00 9.72 N
ATOM 17 C5 G A1472 -6.672 -7.460 17.341 1.00 9.72 C
ATOM 18 C6 G A1472 -5.706 -7.248 18.354 1.00 9.72 C
ATOM 19 O6 G A1472 -4.562 -6.747 18.246 1.00 9.72 O
ATOM 20 N1 G A1472 -6.210 -7.680 19.576 1.00 9.72 N
ATOM 21 C2 G A1472 -7.444 -8.228 19.783 1.00 9.72 C
ATOM 22 N2 G A1472 -7.759 -8.587 21.027 1.00 9.72 N
ATOM 23 N3 G A1472 -8.331 -8.424 18.862 1.00 9.72 N
ATOM 24 C4 G A1472 -7.887 -8.026 17.677 1.00 9.72 C
ATOM 25 P C A1473 -12.505 -4.556 16.209 1.00 11.28 P
ATOM 26 OP1 C A1473 -13.823 -4.003 15.828 1.00 11.28 O
ATOM 27 OP2 C A1473 -11.284 -3.955 15.628 1.00 11.28 O
ATOM 28 O5' C A1473 -12.386 -4.621 17.796 1.00 11.28 O
TER
ATOM 1 O3' G B1504 -0.231 -6.714 28.129 1.00 38.86 O
ATOM 2 P C B1505 -0.401 -8.170 27.459 1.00 26.39 P
ATOM 3 OP1 C B1505 0.095 -9.171 28.458 1.00 26.39 O
ATOM 4 OP2 C B1505 0.240 -8.107 26.103 1.00 26.39 O
ATOM 5 O5' C B1505 -1.986 -8.315 27.304 1.00 26.39 O
ATOM 6 C5' C B1505 -2.752 -9.022 28.269 1.00 26.39 C
ATOM 7 C4' C B1505 -4.180 -9.187 27.818 1.00 26.39 C
ATOM 8 O4' C B1505 -4.620 -7.983 27.146 1.00 26.39 O
ATOM 9 C3' C B1505 -4.437 -10.260 26.784 1.00 26.39 C
ATOM 10 O3' C B1505 -4.454 -11.560 27.315 1.00 26.39 O
ATOM 11 C2' C B1505 -5.757 -9.818 26.188 1.00 26.39 C
ATOM 12 O2' C B1505 -6.832 -10.065 27.085 1.00 26.39 O
ATOM 13 C1' C B1505 -5.524 -8.320 26.116 1.00 26.39 C
ATOM 14 N1 C B1505 -4.931 -7.921 24.851 1.00 25.92 N
ATOM 15 C2 C B1505 -5.809 -7.704 23.819 1.00 25.92 C
ATOM 16 O2 C B1505 -7.008 -7.916 24.087 1.00 25.92 O
ATOM 17 N3 C B1505 -5.325 -7.296 22.609 1.00 25.92 N
ATOM 18 C4 C B1505 -4.014 -7.115 22.444 1.00 25.92 C
ATOM 19 N4 C B1505 -3.552 -6.725 21.258 1.00 25.92 N
ATOM 20 C5 C B1505 -3.107 -7.331 23.509 1.00 25.92 C
ATOM 21 C6 C B1505 -3.602 -7.726 24.690 1.00 25.92 C
ATOM 22 P U B1506 -3.607 -12.701 26.579 1.00 26.53 P
ATOM 23 OP1 U B1506 -3.459 -13.831 27.545 1.00 26.53 O
ATOM 24 OP2 U B1506 -2.388 -12.052 26.028 1.00 26.53 O
ATOM 25 O5' U B1506 -4.561 -13.126 25.382 1.00 26.53 O
TER
ATOM 2 P G A1472 -8.712 -6.062 12.000 1.00 9.76 P
ATOM 3 OP1 G A1472 -9.585 -5.168 11.176 1.00 9.76 O
ATOM 4 OP2 G A1472 -7.365 -5.580 12.378 1.00 9.76 O
ATOM 5 O5' G A1472 -9.482 -6.567 13.311 1.00 9.76 O
ATOM 6 C5' G A1472 -10.788 -7.116 13.231 1.00 9.76 C
ATOM 7 C4' G A1472 -11.205 -7.740 14.533 1.00 9.76 C
ATOM 8 O4' G A1472 -10.217 -8.721 14.928 1.00 9.76 O
ATOM 9 C3' G A1472 -11.285 -6.800 15.714 1.00 9.76 C
ATOM 10 O3' G A1472 -12.505 -6.101 15.783 1.00 9.76 O
ATOM 11 C2' G A1472 -11.034 -7.720 16.895 1.00 9.76 C
ATOM 12 O2' G A1472 -12.184 -8.487 17.204 1.00 9.76 O
ATOM 13 C1' G A1472 -9.978 -8.641 16.311 1.00 9.76 C
ATOM 14 N9 G A1472 -8.610 -8.109 16.503 1.00 9.72 N
ATOM 15 C8 G A1472 -7.784 -7.583 15.513 1.00 9.72 C
ATOM 16 N7 G A1472 -6.615 -7.180 15.967 1.00 9.72 N
ATOM 17 C5 G A1472 -6.672 -7.460 17.341 1.00 9.72 C
ATOM 18 C6 G A1472 -5.706 -7.248 18.354 1.00 9.72 C
ATOM 19 O6 G A1472 -4.562 -6.747 18.246 1.00 9.72 O
ATOM 20 N1 G A1472 -6.210 -7.680 19.576 1.00 9.72 N
ATOM 21 C2 G A1472 -7.444 -8.228 19.783 1.00 9.72 C
ATOM 22 N2 G A1472 -7.759 -8.587 21.027 1.00 9.72 N
ATOM 23 N3 G A1472 -8.331 -8.424 18.862 1.00 9.72 N
ATOM 24 C4 G A1472 -7.887 -8.026 17.677 1.00 9.72 C
ATOM 25 P C A1473 -12.505 -4.556 16.209 1.00 11.28 P
ATOM 26 OP1 C A1473 -13.823 -4.003 15.828 1.00 11.28 O
ATOM 27 OP2 C A1473 -11.284 -3.955 15.628 1.00 11.28 O
ATOM 28 O5' C A1473 -12.386 -4.621 17.796 1.00 11.28 O
TER
ATOM 1 O3' G B1504 -0.231 -6.714 28.129 1.00 38.86 O
ATOM 2 P C B1505 -0.401 -8.170 27.459 1.00 26.39 P
ATOM 3 OP1 C B1505 0.095 -9.171 28.458 1.00 26.39 O
ATOM 4 OP2 C B1505 0.240 -8.107 26.103 1.00 26.39 O
ATOM 5 O5' C B1505 -1.986 -8.315 27.304 1.00 26.39 O
ATOM 6 C5' C B1505 -2.752 -9.022 28.269 1.00 26.39 C
ATOM 7 C4' C B1505 -4.180 -9.187 27.818 1.00 26.39 C
ATOM 8 O4' C B1505 -4.620 -7.983 27.146 1.00 26.39 O
ATOM 9 C3' C B1505 -4.437 -10.260 26.784 1.00 26.39 C
ATOM 10 O3' C B1505 -4.454 -11.560 27.315 1.00 26.39 O
ATOM 11 C2' C B1505 -5.757 -9.818 26.188 1.00 26.39 C
ATOM 12 O2' C B1505 -6.832 -10.065 27.085 1.00 26.39 O
ATOM 13 C1' C B1505 -5.524 -8.320 26.116 1.00 26.39 C
ATOM 14 N1 C B1505 -4.931 -7.921 24.851 1.00 25.92 N
ATOM 15 C2 C B1505 -5.809 -7.704 23.819 1.00 25.92 C
ATOM 16 O2 C B1505 -7.008 -7.916 24.087 1.00 25.92 O
ATOM 17 N3 C B1505 -5.325 -7.296 22.609 1.00 25.92 N
ATOM 18 C4 C B1505 -4.014 -7.115 22.444 1.00 25.92 C
ATOM 19 N4 C B1505 -3.552 -6.725 21.258 1.00 25.92 N
ATOM 20 C5 C B1505 -3.107 -7.331 23.509 1.00 25.92 C
ATOM 21 C6 C B1505 -3.602 -7.726 24.690 1.00 25.92 C
ATOM 22 P U B1506 -3.607 -12.701 26.579 1.00 26.53 P
ATOM 23 OP1 U B1506 -3.459 -13.831 27.545 1.00 26.53 O
ATOM 24 OP2 U B1506 -2.388 -12.052 26.028 1.00 26.53 O
ATOM 25 O5' U B1506 -4.561 -13.126 25.382 1.00 26.53 O
TER
Atoms:
OP1: (-9.585,-5.168,11.176)
OP2: (-7.365,-5.580,12.378)
C3': (-11.285,-6.800,15.714)
C1': (-9.978,-8.641,16.311)
C5': (-10.788,-7.116,13.231)
O6: (-4.562,-6.747,18.246)
O4': (-10.217,-8.721,14.928)
C8: (-7.784,-7.583,15.513)
C2: (-7.444,-8.228,19.783)
C6: (-5.706,-7.248,18.354)
C5: (-6.672,-7.460,17.341)
C4: (-7.887,-8.026,17.677)
P: (-8.712,-6.062,12.000)
C4': (-11.205,-7.740,14.533)
C2': (-11.034,-7.720,16.895)
O2': (-12.184,-8.487,17.204)
N1: (-6.210,-7.680,19.576)
N2: (-7.759,-8.587,21.027)
N3: (-8.331,-8.424,18.862)
N7: (-6.615,-7.180,15.967)
N9: (-8.610,-8.109,16.503)
O5': (-9.482,-6.567,13.311)
O3': (-12.505,-6.101,15.783)
OP2: (-7.365,-5.580,12.378)
C3': (-11.285,-6.800,15.714)
C1': (-9.978,-8.641,16.311)
C5': (-10.788,-7.116,13.231)
O6: (-4.562,-6.747,18.246)
O4': (-10.217,-8.721,14.928)
C8: (-7.784,-7.583,15.513)
C2: (-7.444,-8.228,19.783)
C6: (-5.706,-7.248,18.354)
C5: (-6.672,-7.460,17.341)
C4: (-7.887,-8.026,17.677)
P: (-8.712,-6.062,12.000)
C4': (-11.205,-7.740,14.533)
C2': (-11.034,-7.720,16.895)
O2': (-12.184,-8.487,17.204)
N1: (-6.210,-7.680,19.576)
N2: (-7.759,-8.587,21.027)
N3: (-8.331,-8.424,18.862)
N7: (-6.615,-7.180,15.967)
N9: (-8.610,-8.109,16.503)
O5': (-9.482,-6.567,13.311)
O3': (-12.505,-6.101,15.783)
C2: (-5.809,-7.704,23.819)
OP1: (0.095,-9.171,28.458)
OP2: (0.240,-8.107,26.103)
C4: (-4.014,-7.115,22.444)
O5': (-1.986,-8.315,27.304)
C3': (-4.437,-10.260,26.784)
C1': (-5.524,-8.320,26.116)
O4': (-4.620,-7.983,27.146)
C5': (-2.752,-9.022,28.269)
P: (-0.401,-8.170,27.459)
O2: (-7.008,-7.916,24.087)
C4': (-4.180,-9.187,27.818)
C2': (-5.757,-9.818,26.188)
O2': (-6.832,-10.065,27.085)
N1: (-4.931,-7.921,24.851)
N3: (-5.325,-7.296,22.609)
N4: (-3.552,-6.725,21.258)
C6: (-3.602,-7.726,24.690)
C5: (-3.107,-7.331,23.509)
O3': (-4.454,-11.560,27.315)
OP1: (0.095,-9.171,28.458)
OP2: (0.240,-8.107,26.103)
C4: (-4.014,-7.115,22.444)
O5': (-1.986,-8.315,27.304)
C3': (-4.437,-10.260,26.784)
C1': (-5.524,-8.320,26.116)
O4': (-4.620,-7.983,27.146)
C5': (-2.752,-9.022,28.269)
P: (-0.401,-8.170,27.459)
O2: (-7.008,-7.916,24.087)
C4': (-4.180,-9.187,27.818)
C2': (-5.757,-9.818,26.188)
O2': (-6.832,-10.065,27.085)
N1: (-4.931,-7.921,24.851)
N3: (-5.325,-7.296,22.609)
N4: (-3.552,-6.725,21.258)
C6: (-3.602,-7.726,24.690)
C5: (-3.107,-7.331,23.509)
O3': (-4.454,-11.560,27.315)
Image (generated by PyMOL):