Doublet info:
Details
Nucleotide types:
GC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3SKI:B53:B42
Extra
PDB:
ATOM 1 O3' U A 52 7.554 -5.829 -2.134 1.00 55.75 O
ATOM 2 P G A 53 7.426 -5.362 -0.605 1.00 57.33 P
ATOM 3 OP1 G A 53 7.649 -6.550 0.251 1.00 59.54 O
ATOM 4 OP2 G A 53 6.176 -4.581 -0.453 1.00 55.96 O
ATOM 5 O5' G A 53 8.659 -4.349 -0.449 1.00 57.60 O
ATOM 6 C5' G A 53 9.991 -4.853 -0.357 1.00 58.88 C
ATOM 7 C4' G A 53 11.017 -3.734 -0.308 1.00 58.86 C
ATOM 8 O4' G A 53 10.853 -2.833 -1.435 1.00 56.39 O
ATOM 9 C3' G A 53 10.931 -2.807 0.894 1.00 59.85 C
ATOM 10 O3' G A 53 11.474 -3.419 2.059 1.00 62.20 O
ATOM 11 C2' G A 53 11.766 -1.633 0.391 1.00 59.09 C
ATOM 12 O2' G A 53 13.162 -1.870 0.428 1.00 60.50 O
ATOM 13 C1' G A 53 11.270 -1.528 -1.055 1.00 56.59 C
ATOM 14 N9 G A 53 10.143 -0.600 -1.183 1.00 55.29 N
ATOM 15 C8 G A 53 8.847 -0.911 -1.523 1.00 53.96 C
ATOM 16 N7 G A 53 8.049 0.118 -1.542 1.00 53.12 N
ATOM 17 C5 G A 53 8.860 1.186 -1.181 1.00 54.05 C
ATOM 18 C6 G A 53 8.550 2.564 -1.033 1.00 53.84 C
ATOM 19 O6 G A 53 7.457 3.125 -1.197 1.00 52.51 O
ATOM 20 N1 G A 53 9.667 3.316 -0.657 1.00 55.31 N
ATOM 21 C2 G A 53 10.927 2.799 -0.449 1.00 56.86 C
ATOM 22 N2 G A 53 11.880 3.671 -0.091 1.00 58.59 N
ATOM 23 N3 G A 53 11.231 1.512 -0.586 1.00 56.95 N
ATOM 24 C4 G A 53 10.154 0.762 -0.954 1.00 55.37 C
ATOM 25 P G A 54 10.811 -3.145 3.496 1.00 64.04 P
ATOM 26 OP1 G A 54 11.444 -4.067 4.465 1.00 67.20 O
ATOM 27 OP2 G A 54 9.336 -3.152 3.341 1.00 62.48 O
ATOM 28 O5' G A 54 11.267 -1.639 3.811 1.00 64.29 O
TER
ATOM 1 O3' U B 41 7.359 13.104 -0.057 1.00 60.91 O
ATOM 2 P C B 42 7.740 12.893 -1.600 1.00 57.67 P
ATOM 3 OP1 C B 42 8.250 14.190 -2.105 1.00 58.70 O
ATOM 4 OP2 C B 42 6.607 12.235 -2.295 1.00 55.31 O
ATOM 5 O5' C B 42 8.949 11.840 -1.525 1.00 57.20 O
ATOM 6 C5' C B 42 10.248 12.265 -1.100 1.00 58.51 C
ATOM 7 C4' C B 42 11.105 11.087 -0.663 1.00 58.31 C
ATOM 8 O4' C B 42 10.365 10.233 0.247 1.00 58.33 O
ATOM 9 C3' C B 42 11.523 10.135 -1.774 1.00 55.64 C
ATOM 10 O3' C B 42 12.612 10.654 -2.518 1.00 54.78 O
ATOM 11 C2' C B 42 11.897 8.894 -0.969 1.00 56.32 C
ATOM 12 O2' C B 42 13.160 9.003 -0.332 1.00 58.59 O
ATOM 13 C1' C B 42 10.766 8.880 0.064 1.00 57.55 C
ATOM 14 N1 C B 42 9.584 8.037 -0.366 1.00 55.72 N
ATOM 15 C2 C B 42 9.655 6.634 -0.274 1.00 55.39 C
ATOM 16 O2 C B 42 10.680 6.098 0.169 1.00 57.00 O
ATOM 17 N3 C B 42 8.584 5.893 -0.672 1.00 53.86 N
ATOM 18 C4 C B 42 7.488 6.493 -1.149 1.00 52.88 C
ATOM 19 N4 C B 42 6.466 5.719 -1.529 1.00 51.57 N
ATOM 20 C5 C B 42 7.394 7.914 -1.257 1.00 53.33 C
ATOM 21 C6 C B 42 8.451 8.635 -0.859 1.00 54.33 C
ATOM 22 P A B 43 12.585 10.572 -4.116 1.00 51.82 P
ATOM 23 OP1 A B 43 13.627 11.500 -4.615 1.00 52.58 O
ATOM 24 OP2 A B 43 11.184 10.727 -4.577 1.00 50.05 O
ATOM 25 O5' A B 43 13.024 9.060 -4.410 1.00 50.28 O
TER
ATOM 2 P G A 53 7.426 -5.362 -0.605 1.00 57.33 P
ATOM 3 OP1 G A 53 7.649 -6.550 0.251 1.00 59.54 O
ATOM 4 OP2 G A 53 6.176 -4.581 -0.453 1.00 55.96 O
ATOM 5 O5' G A 53 8.659 -4.349 -0.449 1.00 57.60 O
ATOM 6 C5' G A 53 9.991 -4.853 -0.357 1.00 58.88 C
ATOM 7 C4' G A 53 11.017 -3.734 -0.308 1.00 58.86 C
ATOM 8 O4' G A 53 10.853 -2.833 -1.435 1.00 56.39 O
ATOM 9 C3' G A 53 10.931 -2.807 0.894 1.00 59.85 C
ATOM 10 O3' G A 53 11.474 -3.419 2.059 1.00 62.20 O
ATOM 11 C2' G A 53 11.766 -1.633 0.391 1.00 59.09 C
ATOM 12 O2' G A 53 13.162 -1.870 0.428 1.00 60.50 O
ATOM 13 C1' G A 53 11.270 -1.528 -1.055 1.00 56.59 C
ATOM 14 N9 G A 53 10.143 -0.600 -1.183 1.00 55.29 N
ATOM 15 C8 G A 53 8.847 -0.911 -1.523 1.00 53.96 C
ATOM 16 N7 G A 53 8.049 0.118 -1.542 1.00 53.12 N
ATOM 17 C5 G A 53 8.860 1.186 -1.181 1.00 54.05 C
ATOM 18 C6 G A 53 8.550 2.564 -1.033 1.00 53.84 C
ATOM 19 O6 G A 53 7.457 3.125 -1.197 1.00 52.51 O
ATOM 20 N1 G A 53 9.667 3.316 -0.657 1.00 55.31 N
ATOM 21 C2 G A 53 10.927 2.799 -0.449 1.00 56.86 C
ATOM 22 N2 G A 53 11.880 3.671 -0.091 1.00 58.59 N
ATOM 23 N3 G A 53 11.231 1.512 -0.586 1.00 56.95 N
ATOM 24 C4 G A 53 10.154 0.762 -0.954 1.00 55.37 C
ATOM 25 P G A 54 10.811 -3.145 3.496 1.00 64.04 P
ATOM 26 OP1 G A 54 11.444 -4.067 4.465 1.00 67.20 O
ATOM 27 OP2 G A 54 9.336 -3.152 3.341 1.00 62.48 O
ATOM 28 O5' G A 54 11.267 -1.639 3.811 1.00 64.29 O
TER
ATOM 1 O3' U B 41 7.359 13.104 -0.057 1.00 60.91 O
ATOM 2 P C B 42 7.740 12.893 -1.600 1.00 57.67 P
ATOM 3 OP1 C B 42 8.250 14.190 -2.105 1.00 58.70 O
ATOM 4 OP2 C B 42 6.607 12.235 -2.295 1.00 55.31 O
ATOM 5 O5' C B 42 8.949 11.840 -1.525 1.00 57.20 O
ATOM 6 C5' C B 42 10.248 12.265 -1.100 1.00 58.51 C
ATOM 7 C4' C B 42 11.105 11.087 -0.663 1.00 58.31 C
ATOM 8 O4' C B 42 10.365 10.233 0.247 1.00 58.33 O
ATOM 9 C3' C B 42 11.523 10.135 -1.774 1.00 55.64 C
ATOM 10 O3' C B 42 12.612 10.654 -2.518 1.00 54.78 O
ATOM 11 C2' C B 42 11.897 8.894 -0.969 1.00 56.32 C
ATOM 12 O2' C B 42 13.160 9.003 -0.332 1.00 58.59 O
ATOM 13 C1' C B 42 10.766 8.880 0.064 1.00 57.55 C
ATOM 14 N1 C B 42 9.584 8.037 -0.366 1.00 55.72 N
ATOM 15 C2 C B 42 9.655 6.634 -0.274 1.00 55.39 C
ATOM 16 O2 C B 42 10.680 6.098 0.169 1.00 57.00 O
ATOM 17 N3 C B 42 8.584 5.893 -0.672 1.00 53.86 N
ATOM 18 C4 C B 42 7.488 6.493 -1.149 1.00 52.88 C
ATOM 19 N4 C B 42 6.466 5.719 -1.529 1.00 51.57 N
ATOM 20 C5 C B 42 7.394 7.914 -1.257 1.00 53.33 C
ATOM 21 C6 C B 42 8.451 8.635 -0.859 1.00 54.33 C
ATOM 22 P A B 43 12.585 10.572 -4.116 1.00 51.82 P
ATOM 23 OP1 A B 43 13.627 11.500 -4.615 1.00 52.58 O
ATOM 24 OP2 A B 43 11.184 10.727 -4.577 1.00 50.05 O
ATOM 25 O5' A B 43 13.024 9.060 -4.410 1.00 50.28 O
TER
Atoms:
OP1: (7.649,-6.550,0.251)
OP2: (6.176,-4.581,-0.453)
C3': (10.931,-2.807,0.894)
C1': (11.270,-1.528,-1.055)
C5': (9.991,-4.853,-0.357)
O6: (7.457,3.125,-1.197)
O4': (10.853,-2.833,-1.435)
C8: (8.847,-0.911,-1.523)
C2: (10.927,2.799,-0.449)
C6: (8.550,2.564,-1.033)
C5: (8.860,1.186,-1.181)
C4: (10.154,0.762,-0.954)
P: (7.426,-5.362,-0.605)
C4': (11.017,-3.734,-0.308)
C2': (11.766,-1.633,0.391)
O2': (13.162,-1.870,0.428)
N1: (9.667,3.316,-0.657)
N2: (11.880,3.671,-0.091)
N3: (11.231,1.512,-0.586)
N7: (8.049,0.118,-1.542)
N9: (10.143,-0.600,-1.183)
O5': (8.659,-4.349,-0.449)
O3': (11.474,-3.419,2.059)
OP2: (6.176,-4.581,-0.453)
C3': (10.931,-2.807,0.894)
C1': (11.270,-1.528,-1.055)
C5': (9.991,-4.853,-0.357)
O6: (7.457,3.125,-1.197)
O4': (10.853,-2.833,-1.435)
C8: (8.847,-0.911,-1.523)
C2: (10.927,2.799,-0.449)
C6: (8.550,2.564,-1.033)
C5: (8.860,1.186,-1.181)
C4: (10.154,0.762,-0.954)
P: (7.426,-5.362,-0.605)
C4': (11.017,-3.734,-0.308)
C2': (11.766,-1.633,0.391)
O2': (13.162,-1.870,0.428)
N1: (9.667,3.316,-0.657)
N2: (11.880,3.671,-0.091)
N3: (11.231,1.512,-0.586)
N7: (8.049,0.118,-1.542)
N9: (10.143,-0.600,-1.183)
O5': (8.659,-4.349,-0.449)
O3': (11.474,-3.419,2.059)
C2: (9.655,6.634,-0.274)
OP1: (8.250,14.190,-2.105)
OP2: (6.607,12.235,-2.295)
C4: (7.488,6.493,-1.149)
O5': (8.949,11.840,-1.525)
C3': (11.523,10.135,-1.774)
C1': (10.766,8.880,0.064)
O4': (10.365,10.233,0.247)
C5': (10.248,12.265,-1.100)
P: (7.740,12.893,-1.600)
O2: (10.680,6.098,0.169)
C4': (11.105,11.087,-0.663)
C2': (11.897,8.894,-0.969)
O2': (13.160,9.003,-0.332)
N1: (9.584,8.037,-0.366)
N3: (8.584,5.893,-0.672)
N4: (6.466,5.719,-1.529)
C6: (8.451,8.635,-0.859)
C5: (7.394,7.914,-1.257)
O3': (12.612,10.654,-2.518)
OP1: (8.250,14.190,-2.105)
OP2: (6.607,12.235,-2.295)
C4: (7.488,6.493,-1.149)
O5': (8.949,11.840,-1.525)
C3': (11.523,10.135,-1.774)
C1': (10.766,8.880,0.064)
O4': (10.365,10.233,0.247)
C5': (10.248,12.265,-1.100)
P: (7.740,12.893,-1.600)
O2: (10.680,6.098,0.169)
C4': (11.105,11.087,-0.663)
C2': (11.897,8.894,-0.969)
O2': (13.160,9.003,-0.332)
N1: (9.584,8.037,-0.366)
N3: (8.584,5.893,-0.672)
N4: (6.466,5.719,-1.529)
C6: (8.451,8.635,-0.859)
C5: (7.394,7.914,-1.257)
O3': (12.612,10.654,-2.518)
Image (generated by PyMOL):