Doublet info:
Details
Nucleotide types:
GC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2PXD:B1:B47
Extra
PDB:
ATOM 1 P G A 1 121.943 -23.799 59.034 1.00 43.48 P
ATOM 2 OP1 G A 1 121.374 -24.756 58.053 1.00 38.18 O
ATOM 3 OP2 G A 1 121.681 -22.342 58.889 1.00 35.27 O
ATOM 4 O5' G A 1 121.504 -24.284 60.478 1.00 40.69 O
ATOM 5 C5' G A 1 121.598 -25.654 60.807 1.00 40.68 C
ATOM 6 C4' G A 1 121.458 -25.841 62.286 1.00 41.35 C
ATOM 7 O4' G A 1 122.552 -25.167 62.960 1.00 41.61 O
ATOM 8 C3' G A 1 120.247 -25.195 62.922 1.00 42.03 C
ATOM 9 O3' G A 1 119.074 -25.956 62.692 1.00 44.91 O
ATOM 10 C2' G A 1 120.663 -25.179 64.385 1.00 40.69 C
ATOM 11 O2' G A 1 120.592 -26.453 64.981 1.00 42.78 O
ATOM 12 C1' G A 1 122.135 -24.790 64.262 1.00 38.13 C
ATOM 13 N9 G A 1 122.302 -23.354 64.405 1.00 26.01 N
ATOM 14 C8 G A 1 122.598 -22.435 63.428 1.00 25.40 C
ATOM 15 N7 G A 1 122.639 -21.209 63.879 1.00 25.37 N
ATOM 16 C5 G A 1 122.365 -21.338 65.235 1.00 23.56 C
ATOM 17 C6 G A 1 122.264 -20.361 66.244 1.00 23.13 C
ATOM 18 O6 G A 1 122.411 -19.144 66.146 1.00 25.92 O
ATOM 19 N1 G A 1 121.956 -20.924 67.476 1.00 22.03 N
ATOM 20 C2 G A 1 121.772 -22.264 67.705 1.00 22.22 C
ATOM 21 N2 G A 1 121.466 -22.620 68.959 1.00 21.66 N
ATOM 22 N3 G A 1 121.874 -23.188 66.771 1.00 23.23 N
ATOM 23 C4 G A 1 122.164 -22.657 65.569 1.00 24.31 C
ATOM 24 P G A 2 117.675 -25.200 62.459 1.00 53.31 P
ATOM 25 OP1 G A 2 116.705 -26.218 61.985 1.00 42.98 O
ATOM 26 OP2 G A 2 117.927 -23.985 61.640 1.00 42.72 O
ATOM 27 O5' G A 2 117.261 -24.749 63.925 1.00 52.59 O
TER
ATOM 1 O3' U B 46 121.448 -13.860 74.346 1.00 38.51 O
ATOM 2 P C B 47 122.848 -14.585 74.684 1.00 44.96 P
ATOM 3 OP1 C B 47 123.038 -14.340 76.131 1.00 35.46 O
ATOM 4 OP2 C B 47 123.907 -14.165 73.725 1.00 33.77 O
ATOM 5 O5' C B 47 122.559 -16.142 74.477 1.00 43.63 O
ATOM 6 C5' C B 47 121.765 -16.854 75.420 1.00 44.51 C
ATOM 7 C4' C B 47 121.433 -18.237 74.909 1.00 45.72 C
ATOM 8 O4' C B 47 120.649 -18.153 73.685 1.00 45.97 O
ATOM 9 C3' C B 47 122.609 -19.116 74.530 1.00 46.34 C
ATOM 10 O3' C B 47 123.139 -19.736 75.692 1.00 49.58 O
ATOM 11 C2' C B 47 121.947 -20.146 73.623 1.00 45.98 C
ATOM 12 O2' C B 47 121.292 -21.153 74.366 1.00 45.46 O
ATOM 13 C1' C B 47 120.922 -19.285 72.872 1.00 44.54 C
ATOM 14 N1 C B 47 121.427 -18.809 71.575 1.00 32.11 N
ATOM 15 C2 C B 47 121.423 -19.684 70.483 1.00 31.26 C
ATOM 16 O2 C B 47 120.975 -20.828 70.631 1.00 32.39 O
ATOM 17 N3 C B 47 121.909 -19.263 69.298 1.00 29.94 N
ATOM 18 C4 C B 47 122.387 -18.025 69.178 1.00 29.50 C
ATOM 19 N4 C B 47 122.865 -17.654 67.994 1.00 29.03 N
ATOM 20 C5 C B 47 122.399 -17.110 70.271 1.00 30.35 C
ATOM 21 C6 C B 47 121.908 -17.538 71.439 1.00 31.14 C
ATOM 22 P C B 48 124.684 -20.180 75.733 1.00 48.87 P
ATOM 23 OP1 C B 48 124.903 -20.743 77.087 1.00 44.90 O
ATOM 24 OP2 C B 48 125.515 -19.043 75.265 1.00 44.16 O
ATOM 25 O5' C B 48 124.789 -21.372 74.679 1.00 47.71 O
TER
ATOM 2 OP1 G A 1 121.374 -24.756 58.053 1.00 38.18 O
ATOM 3 OP2 G A 1 121.681 -22.342 58.889 1.00 35.27 O
ATOM 4 O5' G A 1 121.504 -24.284 60.478 1.00 40.69 O
ATOM 5 C5' G A 1 121.598 -25.654 60.807 1.00 40.68 C
ATOM 6 C4' G A 1 121.458 -25.841 62.286 1.00 41.35 C
ATOM 7 O4' G A 1 122.552 -25.167 62.960 1.00 41.61 O
ATOM 8 C3' G A 1 120.247 -25.195 62.922 1.00 42.03 C
ATOM 9 O3' G A 1 119.074 -25.956 62.692 1.00 44.91 O
ATOM 10 C2' G A 1 120.663 -25.179 64.385 1.00 40.69 C
ATOM 11 O2' G A 1 120.592 -26.453 64.981 1.00 42.78 O
ATOM 12 C1' G A 1 122.135 -24.790 64.262 1.00 38.13 C
ATOM 13 N9 G A 1 122.302 -23.354 64.405 1.00 26.01 N
ATOM 14 C8 G A 1 122.598 -22.435 63.428 1.00 25.40 C
ATOM 15 N7 G A 1 122.639 -21.209 63.879 1.00 25.37 N
ATOM 16 C5 G A 1 122.365 -21.338 65.235 1.00 23.56 C
ATOM 17 C6 G A 1 122.264 -20.361 66.244 1.00 23.13 C
ATOM 18 O6 G A 1 122.411 -19.144 66.146 1.00 25.92 O
ATOM 19 N1 G A 1 121.956 -20.924 67.476 1.00 22.03 N
ATOM 20 C2 G A 1 121.772 -22.264 67.705 1.00 22.22 C
ATOM 21 N2 G A 1 121.466 -22.620 68.959 1.00 21.66 N
ATOM 22 N3 G A 1 121.874 -23.188 66.771 1.00 23.23 N
ATOM 23 C4 G A 1 122.164 -22.657 65.569 1.00 24.31 C
ATOM 24 P G A 2 117.675 -25.200 62.459 1.00 53.31 P
ATOM 25 OP1 G A 2 116.705 -26.218 61.985 1.00 42.98 O
ATOM 26 OP2 G A 2 117.927 -23.985 61.640 1.00 42.72 O
ATOM 27 O5' G A 2 117.261 -24.749 63.925 1.00 52.59 O
TER
ATOM 1 O3' U B 46 121.448 -13.860 74.346 1.00 38.51 O
ATOM 2 P C B 47 122.848 -14.585 74.684 1.00 44.96 P
ATOM 3 OP1 C B 47 123.038 -14.340 76.131 1.00 35.46 O
ATOM 4 OP2 C B 47 123.907 -14.165 73.725 1.00 33.77 O
ATOM 5 O5' C B 47 122.559 -16.142 74.477 1.00 43.63 O
ATOM 6 C5' C B 47 121.765 -16.854 75.420 1.00 44.51 C
ATOM 7 C4' C B 47 121.433 -18.237 74.909 1.00 45.72 C
ATOM 8 O4' C B 47 120.649 -18.153 73.685 1.00 45.97 O
ATOM 9 C3' C B 47 122.609 -19.116 74.530 1.00 46.34 C
ATOM 10 O3' C B 47 123.139 -19.736 75.692 1.00 49.58 O
ATOM 11 C2' C B 47 121.947 -20.146 73.623 1.00 45.98 C
ATOM 12 O2' C B 47 121.292 -21.153 74.366 1.00 45.46 O
ATOM 13 C1' C B 47 120.922 -19.285 72.872 1.00 44.54 C
ATOM 14 N1 C B 47 121.427 -18.809 71.575 1.00 32.11 N
ATOM 15 C2 C B 47 121.423 -19.684 70.483 1.00 31.26 C
ATOM 16 O2 C B 47 120.975 -20.828 70.631 1.00 32.39 O
ATOM 17 N3 C B 47 121.909 -19.263 69.298 1.00 29.94 N
ATOM 18 C4 C B 47 122.387 -18.025 69.178 1.00 29.50 C
ATOM 19 N4 C B 47 122.865 -17.654 67.994 1.00 29.03 N
ATOM 20 C5 C B 47 122.399 -17.110 70.271 1.00 30.35 C
ATOM 21 C6 C B 47 121.908 -17.538 71.439 1.00 31.14 C
ATOM 22 P C B 48 124.684 -20.180 75.733 1.00 48.87 P
ATOM 23 OP1 C B 48 124.903 -20.743 77.087 1.00 44.90 O
ATOM 24 OP2 C B 48 125.515 -19.043 75.265 1.00 44.16 O
ATOM 25 O5' C B 48 124.789 -21.372 74.679 1.00 47.71 O
TER
Atoms:
OP1: (121.374,-24.756,58.053)
OP2: (121.681,-22.342,58.889)
C3': (120.247,-25.195,62.922)
C1': (122.135,-24.790,64.262)
C5': (121.598,-25.654,60.807)
O6: (122.411,-19.144,66.146)
O4': (122.552,-25.167,62.960)
C8: (122.598,-22.435,63.428)
C2: (121.772,-22.264,67.705)
C6: (122.264,-20.361,66.244)
C5: (122.365,-21.338,65.235)
C4: (122.164,-22.657,65.569)
P: (121.943,-23.799,59.034)
C4': (121.458,-25.841,62.286)
C2': (120.663,-25.179,64.385)
O2': (120.592,-26.453,64.981)
N1: (121.956,-20.924,67.476)
N2: (121.466,-22.620,68.959)
N3: (121.874,-23.188,66.771)
N7: (122.639,-21.209,63.879)
N9: (122.302,-23.354,64.405)
O5': (121.504,-24.284,60.478)
O3': (119.074,-25.956,62.692)
OP2: (121.681,-22.342,58.889)
C3': (120.247,-25.195,62.922)
C1': (122.135,-24.790,64.262)
C5': (121.598,-25.654,60.807)
O6: (122.411,-19.144,66.146)
O4': (122.552,-25.167,62.960)
C8: (122.598,-22.435,63.428)
C2: (121.772,-22.264,67.705)
C6: (122.264,-20.361,66.244)
C5: (122.365,-21.338,65.235)
C4: (122.164,-22.657,65.569)
P: (121.943,-23.799,59.034)
C4': (121.458,-25.841,62.286)
C2': (120.663,-25.179,64.385)
O2': (120.592,-26.453,64.981)
N1: (121.956,-20.924,67.476)
N2: (121.466,-22.620,68.959)
N3: (121.874,-23.188,66.771)
N7: (122.639,-21.209,63.879)
N9: (122.302,-23.354,64.405)
O5': (121.504,-24.284,60.478)
O3': (119.074,-25.956,62.692)
C2: (121.423,-19.684,70.483)
OP1: (123.038,-14.340,76.131)
OP2: (123.907,-14.165,73.725)
C4: (122.387,-18.025,69.178)
O5': (122.559,-16.142,74.477)
C3': (122.609,-19.116,74.530)
C1': (120.922,-19.285,72.872)
O4': (120.649,-18.153,73.685)
C5': (121.765,-16.854,75.420)
P: (122.848,-14.585,74.684)
O2: (120.975,-20.828,70.631)
C4': (121.433,-18.237,74.909)
C2': (121.947,-20.146,73.623)
O2': (121.292,-21.153,74.366)
N1: (121.427,-18.809,71.575)
N3: (121.909,-19.263,69.298)
N4: (122.865,-17.654,67.994)
C6: (121.908,-17.538,71.439)
C5: (122.399,-17.110,70.271)
O3': (123.139,-19.736,75.692)
OP1: (123.038,-14.340,76.131)
OP2: (123.907,-14.165,73.725)
C4: (122.387,-18.025,69.178)
O5': (122.559,-16.142,74.477)
C3': (122.609,-19.116,74.530)
C1': (120.922,-19.285,72.872)
O4': (120.649,-18.153,73.685)
C5': (121.765,-16.854,75.420)
P: (122.848,-14.585,74.684)
O2: (120.975,-20.828,70.631)
C4': (121.433,-18.237,74.909)
C2': (121.947,-20.146,73.623)
O2': (121.292,-21.153,74.366)
N1: (121.427,-18.809,71.575)
N3: (121.909,-19.263,69.298)
N4: (122.865,-17.654,67.994)
C6: (121.908,-17.538,71.439)
C5: (122.399,-17.110,70.271)
O3': (123.139,-19.736,75.692)
Image (generated by PyMOL):