Doublet info:
Details
Nucleotide types:
GC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2XD0:W13:W27
Extra
PDB:
ATOM 1 O3' U A 12 -12.162 -3.244 38.534 1.00 84.49 O
ATOM 2 P G A 13 -10.804 -3.997 38.065 1.00 78.05 P
ATOM 3 OP1 G A 13 -10.547 -4.937 39.180 1.00 76.84 O
ATOM 4 OP2 G A 13 -9.724 -3.042 37.735 1.00 70.13 O
ATOM 5 O5' G A 13 -11.184 -4.724 36.700 1.00 78.24 O
ATOM 6 C5' G A 13 -12.282 -5.614 36.590 1.00 85.29 C
ATOM 7 C4' G A 13 -12.538 -5.988 35.153 1.00 87.19 C
ATOM 8 O4' G A 13 -13.164 -4.879 34.446 1.00 88.90 O
ATOM 9 C3' G A 13 -11.311 -6.287 34.310 1.00 81.12 C
ATOM 10 O3' G A 13 -10.694 -7.539 34.567 1.00 83.15 O
ATOM 11 C2' G A 13 -11.876 -6.129 32.906 1.00 84.12 C
ATOM 12 O2' G A 13 -12.694 -7.240 32.569 1.00 91.15 O
ATOM 13 C1' G A 13 -12.756 -4.885 33.092 1.00 86.85 C
ATOM 14 N9 G A 13 -11.993 -3.644 32.816 1.00 80.53 N
ATOM 15 C8 G A 13 -11.219 -2.979 33.733 1.00 75.11 C
ATOM 16 N7 G A 13 -10.626 -1.921 33.251 1.00 70.80 N
ATOM 17 C5 G A 13 -11.021 -1.875 31.927 1.00 73.21 C
ATOM 18 C6 G A 13 -10.683 -0.937 30.922 1.00 70.80 C
ATOM 19 O6 G A 13 -9.951 0.056 31.010 1.00 66.02 O
ATOM 20 N1 G A 13 -11.283 -1.239 29.712 1.00 75.10 N
ATOM 21 C2 G A 13 -12.104 -2.303 29.506 1.00 81.33 C
ATOM 22 N2 G A 13 -12.577 -2.402 28.265 1.00 85.64 N
ATOM 23 N3 G A 13 -12.433 -3.192 30.430 1.00 83.82 N
ATOM 24 C4 G A 13 -11.862 -2.927 31.629 1.00 79.27 C
ATOM 25 P C A 14 -9.071 -7.617 34.612 1.00 78.93 P
ATOM 26 OP1 C A 14 -8.734 -8.844 35.380 1.00 80.82 O
ATOM 27 OP2 C A 14 -8.579 -6.308 35.123 1.00 71.32 O
ATOM 28 O5' C A 14 -8.657 -7.792 33.073 1.00 72.34 O
TER
ATOM 1 O3' G B 26 -7.333 3.570 21.615 1.00 58.01 O
ATOM 2 P C B 27 -8.775 4.278 21.813 1.00 59.22 P
ATOM 3 OP1 C B 27 -9.058 5.001 20.543 1.00 59.09 O
ATOM 4 OP2 C B 27 -8.711 5.090 23.065 1.00 56.56 O
ATOM 5 O5' C B 27 -9.730 2.996 21.975 1.00 65.31 O
ATOM 6 C5' C B 27 -9.665 1.879 21.096 1.00 68.94 C
ATOM 7 C4' C B 27 -10.453 0.706 21.624 1.00 75.09 C
ATOM 8 O4' C B 27 -9.717 0.049 22.687 1.00 74.05 O
ATOM 9 C3' C B 27 -11.797 1.047 22.244 1.00 78.86 C
ATOM 10 O3' C B 27 -12.824 1.223 21.278 1.00 83.65 O
ATOM 11 C2' C B 27 -12.023 -0.105 23.216 1.00 83.37 C
ATOM 12 O2' C B 27 -12.500 -1.255 22.546 1.00 91.47 O
ATOM 13 C1' C B 27 -10.602 -0.394 23.695 1.00 77.25 C
ATOM 14 N1 C B 27 -10.302 0.300 24.979 1.00 72.77 N
ATOM 15 C2 C B 27 -10.851 -0.168 26.184 1.00 74.21 C
ATOM 16 O2 C B 27 -11.579 -1.166 26.157 1.00 79.30 O
ATOM 17 N3 C B 27 -10.584 0.464 27.353 1.00 70.65 N
ATOM 18 C4 C B 27 -9.798 1.535 27.364 1.00 65.86 C
ATOM 19 N4 C B 27 -9.555 2.139 28.527 1.00 63.10 N
ATOM 20 C5 C B 27 -9.225 2.042 26.166 1.00 64.31 C
ATOM 21 C6 C B 27 -9.497 1.406 25.015 1.00 67.59 C
ATOM 22 P A B 28 -14.252 1.919 21.595 1.00 93.80 P
ATOM 23 OP1 A B 28 -15.058 1.622 20.382 1.00 98.55 O
ATOM 24 OP2 A B 28 -14.117 3.348 21.994 1.00 82.00 O
ATOM 25 O5' A B 28 -14.710 1.037 22.835 1.00 93.04 O
TER
ATOM 2 P G A 13 -10.804 -3.997 38.065 1.00 78.05 P
ATOM 3 OP1 G A 13 -10.547 -4.937 39.180 1.00 76.84 O
ATOM 4 OP2 G A 13 -9.724 -3.042 37.735 1.00 70.13 O
ATOM 5 O5' G A 13 -11.184 -4.724 36.700 1.00 78.24 O
ATOM 6 C5' G A 13 -12.282 -5.614 36.590 1.00 85.29 C
ATOM 7 C4' G A 13 -12.538 -5.988 35.153 1.00 87.19 C
ATOM 8 O4' G A 13 -13.164 -4.879 34.446 1.00 88.90 O
ATOM 9 C3' G A 13 -11.311 -6.287 34.310 1.00 81.12 C
ATOM 10 O3' G A 13 -10.694 -7.539 34.567 1.00 83.15 O
ATOM 11 C2' G A 13 -11.876 -6.129 32.906 1.00 84.12 C
ATOM 12 O2' G A 13 -12.694 -7.240 32.569 1.00 91.15 O
ATOM 13 C1' G A 13 -12.756 -4.885 33.092 1.00 86.85 C
ATOM 14 N9 G A 13 -11.993 -3.644 32.816 1.00 80.53 N
ATOM 15 C8 G A 13 -11.219 -2.979 33.733 1.00 75.11 C
ATOM 16 N7 G A 13 -10.626 -1.921 33.251 1.00 70.80 N
ATOM 17 C5 G A 13 -11.021 -1.875 31.927 1.00 73.21 C
ATOM 18 C6 G A 13 -10.683 -0.937 30.922 1.00 70.80 C
ATOM 19 O6 G A 13 -9.951 0.056 31.010 1.00 66.02 O
ATOM 20 N1 G A 13 -11.283 -1.239 29.712 1.00 75.10 N
ATOM 21 C2 G A 13 -12.104 -2.303 29.506 1.00 81.33 C
ATOM 22 N2 G A 13 -12.577 -2.402 28.265 1.00 85.64 N
ATOM 23 N3 G A 13 -12.433 -3.192 30.430 1.00 83.82 N
ATOM 24 C4 G A 13 -11.862 -2.927 31.629 1.00 79.27 C
ATOM 25 P C A 14 -9.071 -7.617 34.612 1.00 78.93 P
ATOM 26 OP1 C A 14 -8.734 -8.844 35.380 1.00 80.82 O
ATOM 27 OP2 C A 14 -8.579 -6.308 35.123 1.00 71.32 O
ATOM 28 O5' C A 14 -8.657 -7.792 33.073 1.00 72.34 O
TER
ATOM 1 O3' G B 26 -7.333 3.570 21.615 1.00 58.01 O
ATOM 2 P C B 27 -8.775 4.278 21.813 1.00 59.22 P
ATOM 3 OP1 C B 27 -9.058 5.001 20.543 1.00 59.09 O
ATOM 4 OP2 C B 27 -8.711 5.090 23.065 1.00 56.56 O
ATOM 5 O5' C B 27 -9.730 2.996 21.975 1.00 65.31 O
ATOM 6 C5' C B 27 -9.665 1.879 21.096 1.00 68.94 C
ATOM 7 C4' C B 27 -10.453 0.706 21.624 1.00 75.09 C
ATOM 8 O4' C B 27 -9.717 0.049 22.687 1.00 74.05 O
ATOM 9 C3' C B 27 -11.797 1.047 22.244 1.00 78.86 C
ATOM 10 O3' C B 27 -12.824 1.223 21.278 1.00 83.65 O
ATOM 11 C2' C B 27 -12.023 -0.105 23.216 1.00 83.37 C
ATOM 12 O2' C B 27 -12.500 -1.255 22.546 1.00 91.47 O
ATOM 13 C1' C B 27 -10.602 -0.394 23.695 1.00 77.25 C
ATOM 14 N1 C B 27 -10.302 0.300 24.979 1.00 72.77 N
ATOM 15 C2 C B 27 -10.851 -0.168 26.184 1.00 74.21 C
ATOM 16 O2 C B 27 -11.579 -1.166 26.157 1.00 79.30 O
ATOM 17 N3 C B 27 -10.584 0.464 27.353 1.00 70.65 N
ATOM 18 C4 C B 27 -9.798 1.535 27.364 1.00 65.86 C
ATOM 19 N4 C B 27 -9.555 2.139 28.527 1.00 63.10 N
ATOM 20 C5 C B 27 -9.225 2.042 26.166 1.00 64.31 C
ATOM 21 C6 C B 27 -9.497 1.406 25.015 1.00 67.59 C
ATOM 22 P A B 28 -14.252 1.919 21.595 1.00 93.80 P
ATOM 23 OP1 A B 28 -15.058 1.622 20.382 1.00 98.55 O
ATOM 24 OP2 A B 28 -14.117 3.348 21.994 1.00 82.00 O
ATOM 25 O5' A B 28 -14.710 1.037 22.835 1.00 93.04 O
TER
Atoms:
OP1: (-10.547,-4.937,39.180)
OP2: (-9.724,-3.042,37.735)
C3': (-11.311,-6.287,34.310)
C1': (-12.756,-4.885,33.092)
C5': (-12.282,-5.614,36.590)
O6: (-9.951,0.056,31.010)
O4': (-13.164,-4.879,34.446)
C8: (-11.219,-2.979,33.733)
C2: (-12.104,-2.303,29.506)
C6: (-10.683,-0.937,30.922)
C5: (-11.021,-1.875,31.927)
C4: (-11.862,-2.927,31.629)
P: (-10.804,-3.997,38.065)
C4': (-12.538,-5.988,35.153)
C2': (-11.876,-6.129,32.906)
O2': (-12.694,-7.240,32.569)
N1: (-11.283,-1.239,29.712)
N2: (-12.577,-2.402,28.265)
N3: (-12.433,-3.192,30.430)
N7: (-10.626,-1.921,33.251)
N9: (-11.993,-3.644,32.816)
O5': (-11.184,-4.724,36.700)
O3': (-10.694,-7.539,34.567)
OP2: (-9.724,-3.042,37.735)
C3': (-11.311,-6.287,34.310)
C1': (-12.756,-4.885,33.092)
C5': (-12.282,-5.614,36.590)
O6: (-9.951,0.056,31.010)
O4': (-13.164,-4.879,34.446)
C8: (-11.219,-2.979,33.733)
C2: (-12.104,-2.303,29.506)
C6: (-10.683,-0.937,30.922)
C5: (-11.021,-1.875,31.927)
C4: (-11.862,-2.927,31.629)
P: (-10.804,-3.997,38.065)
C4': (-12.538,-5.988,35.153)
C2': (-11.876,-6.129,32.906)
O2': (-12.694,-7.240,32.569)
N1: (-11.283,-1.239,29.712)
N2: (-12.577,-2.402,28.265)
N3: (-12.433,-3.192,30.430)
N7: (-10.626,-1.921,33.251)
N9: (-11.993,-3.644,32.816)
O5': (-11.184,-4.724,36.700)
O3': (-10.694,-7.539,34.567)
C2: (-10.851,-0.168,26.184)
OP1: (-9.058,5.001,20.543)
OP2: (-8.711,5.090,23.065)
C4: (-9.798,1.535,27.364)
O5': (-9.730,2.996,21.975)
C3': (-11.797,1.047,22.244)
C1': (-10.602,-0.394,23.695)
O4': (-9.717,0.049,22.687)
C5': (-9.665,1.879,21.096)
P: (-8.775,4.278,21.813)
O2: (-11.579,-1.166,26.157)
C4': (-10.453,0.706,21.624)
C2': (-12.023,-0.105,23.216)
O2': (-12.500,-1.255,22.546)
N1: (-10.302,0.300,24.979)
N3: (-10.584,0.464,27.353)
N4: (-9.555,2.139,28.527)
C6: (-9.497,1.406,25.015)
C5: (-9.225,2.042,26.166)
O3': (-12.824,1.223,21.278)
OP1: (-9.058,5.001,20.543)
OP2: (-8.711,5.090,23.065)
C4: (-9.798,1.535,27.364)
O5': (-9.730,2.996,21.975)
C3': (-11.797,1.047,22.244)
C1': (-10.602,-0.394,23.695)
O4': (-9.717,0.049,22.687)
C5': (-9.665,1.879,21.096)
P: (-8.775,4.278,21.813)
O2: (-11.579,-1.166,26.157)
C4': (-10.453,0.706,21.624)
C2': (-12.023,-0.105,23.216)
O2': (-12.500,-1.255,22.546)
N1: (-10.302,0.300,24.979)
N3: (-10.584,0.464,27.353)
N4: (-9.555,2.139,28.527)
C6: (-9.497,1.406,25.015)
C5: (-9.225,2.042,26.166)
O3': (-12.824,1.223,21.278)
Image (generated by PyMOL):