ClaRNA

Doublet info:

Details

Nucleotide types: GC
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1YIJ:0658:0664

Extra

PDB:
ATOM 1 O3' G A 657 37.353 107.565 17.160 1.00 41.76 O
ATOM 2 P G A 658 36.640 108.975 17.456 1.00 45.83 P
ATOM 3 OP1 G A 658 36.446 109.643 16.138 1.00 46.31 O
ATOM 4 OP2 G A 658 37.377 109.686 18.540 1.00 44.10 O
ATOM 5 O5' G A 658 35.209 108.597 18.044 1.00 43.90 O
ATOM 6 C5' G A 658 34.260 107.832 17.291 1.00 41.71 C
ATOM 7 C4' G A 658 33.060 107.530 18.149 1.00 44.02 C
ATOM 8 O4' G A 658 33.473 106.747 19.299 1.00 44.18 O
ATOM 9 C3' G A 658 32.383 108.748 18.755 1.00 44.61 C
ATOM 10 O3' G A 658 31.454 109.302 17.834 1.00 45.81 O
ATOM 11 C2' G A 658 31.681 108.162 19.973 1.00 45.59 C
ATOM 12 O2' G A 658 30.465 107.521 19.649 1.00 46.41 O
ATOM 13 C1' G A 658 32.686 107.101 20.424 1.00 45.89 C
ATOM 14 N9 G A 658 33.567 107.538 21.505 1.00 49.73 N
ATOM 15 C8 G A 658 34.914 107.815 21.428 1.00 50.88 C
ATOM 16 N7 G A 658 35.432 108.167 22.573 1.00 50.48 N
ATOM 17 C5 G A 658 34.365 108.121 23.461 1.00 50.68 C
ATOM 18 C6 G A 658 34.315 108.397 24.851 1.00 51.53 C
ATOM 19 O6 G A 658 35.237 108.742 25.606 1.00 51.87 O
ATOM 20 N1 G A 658 33.028 108.241 25.355 1.00 51.62 N
ATOM 21 C2 G A 658 31.932 107.871 24.622 1.00 51.09 C
ATOM 22 N2 G A 658 30.767 107.806 25.286 1.00 49.75 N
ATOM 23 N3 G A 658 31.969 107.596 23.330 1.00 50.76 N
ATOM 24 C4 G A 658 33.207 107.743 22.817 1.00 49.87 C
ATOM 25 P A A 659 31.218 110.888 17.788 1.00 48.71 P
ATOM 26 OP1 A A 659 30.227 111.166 16.716 1.00 49.33 O
ATOM 27 OP2 A A 659 32.559 111.538 17.745 1.00 50.52 O
ATOM 28 O5' A A 659 30.510 111.228 19.169 1.00 46.04 O
TER

ATOM 1 O3' U B 663 32.202 108.692 35.511 1.00 32.29 O
ATOM 2 P C B 664 32.418 107.187 35.013 1.00 33.87 P
ATOM 3 OP1 C B 664 31.965 106.360 36.157 1.00 35.46 O
ATOM 4 OP2 C B 664 33.792 107.024 34.487 1.00 31.33 O
ATOM 5 O5' C B 664 31.391 107.006 33.808 1.00 34.63 O
ATOM 6 C5' C B 664 29.990 107.308 33.980 1.00 36.19 C
ATOM 7 C4' C B 664 29.308 107.436 32.638 1.00 36.92 C
ATOM 8 O4' C B 664 29.869 108.559 31.902 1.00 37.33 O
ATOM 9 C3' C B 664 29.475 106.251 31.697 1.00 37.69 C
ATOM 10 O3' C B 664 28.548 105.211 32.003 1.00 35.81 O
ATOM 11 C2' C B 664 29.207 106.891 30.341 1.00 38.97 C
ATOM 12 O2' C B 664 27.827 107.102 30.099 1.00 37.52 O
ATOM 13 C1' C B 664 29.895 108.250 30.516 1.00 39.14 C
ATOM 14 N1 C B 664 31.300 108.240 30.047 1.00 40.18 N
ATOM 15 C2 C B 664 31.556 108.460 28.682 1.00 39.87 C
ATOM 16 O2 C B 664 30.606 108.681 27.917 1.00 39.61 O
ATOM 17 N3 C B 664 32.832 108.426 28.236 1.00 39.02 N
ATOM 18 C4 C B 664 33.828 108.193 29.086 1.00 38.18 C
ATOM 19 N4 C B 664 35.067 108.161 28.594 1.00 37.24 N
ATOM 20 C5 C B 664 33.600 107.979 30.479 1.00 37.08 C
ATOM 21 C6 C B 664 32.337 108.012 30.912 1.00 37.91 C
ATOM 22 P C B 665 28.887 103.691 31.606 1.00 34.97 P
ATOM 23 OP1 C B 665 27.778 102.886 32.174 1.00 35.90 O
ATOM 24 OP2 C B 665 30.282 103.362 31.977 1.00 34.08 O
ATOM 25 O5' C B 665 28.811 103.673 30.010 1.00 35.52 O
TER

Atoms:
OP1: (36.446,109.643,16.138)
OP2: (37.377,109.686,18.540)
C3': (32.383,108.748,18.755)
C1': (32.686,107.101,20.424)
C5': (34.260,107.832,17.291)
O6: (35.237,108.742,25.606)
O4': (33.473,106.747,19.299)
C8: (34.914,107.815,21.428)
C2: (31.932,107.871,24.622)
C6: (34.315,108.397,24.851)
C5: (34.365,108.121,23.461)
C4: (33.207,107.743,22.817)
P: (36.640,108.975,17.456)
C4': (33.060,107.530,18.149)
C2': (31.681,108.162,19.973)
O2': (30.465,107.521,19.649)
N1: (33.028,108.241,25.355)
N2: (30.767,107.806,25.286)
N3: (31.969,107.596,23.330)
N7: (35.432,108.167,22.573)
N9: (33.567,107.538,21.505)
O5': (35.209,108.597,18.044)
O3': (31.454,109.302,17.834)
C2: (31.556,108.460,28.682)
OP1: (31.965,106.360,36.157)
OP2: (33.792,107.024,34.487)
C4: (33.828,108.193,29.086)
O5': (31.391,107.006,33.808)
C3': (29.475,106.251,31.697)
C1': (29.895,108.250,30.516)
O4': (29.869,108.559,31.902)
C5': (29.990,107.308,33.980)
P: (32.418,107.187,35.013)
O2: (30.606,108.681,27.917)
C4': (29.308,107.436,32.638)
C2': (29.207,106.891,30.341)
O2': (27.827,107.102,30.099)
N1: (31.300,108.240,30.047)
N3: (32.832,108.426,28.236)
N4: (35.067,108.161,28.594)
C6: (32.337,108.012,30.912)
C5: (33.600,107.979,30.479)
O3': (28.548,105.211,32.003)
Image (generated by PyMOL):
PyMOL image
show in jmol