ClaRNA

Doublet info:

Details

Nucleotide types: GC
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1ZDK:R4:R14

Extra

PDB:
ATOM 1 O3' U A 3 17.793 98.330 42.422 0.50129.45 O
ATOM 2 P G A 4 18.759 99.326 41.570 0.50128.59 P
ATOM 3 OP1 G A 4 19.633 100.112 42.537 0.50128.15 O
ATOM 4 OP2 G A 4 17.904 100.076 40.573 0.50126.83 O
ATOM 5 O5' G A 4 19.737 98.333 40.767 0.50126.34 O
ATOM 6 C5' G A 4 20.745 97.549 41.477 0.50121.88 C
ATOM 7 C4' G A 4 21.479 96.623 40.521 0.50118.37 C
ATOM 8 O4' G A 4 20.566 95.620 39.986 0.50117.22 O
ATOM 9 C3' G A 4 22.103 97.278 39.296 0.50116.30 C
ATOM 10 O3' G A 4 23.381 97.867 39.603 0.50114.05 O
ATOM 11 C2' G A 4 22.191 96.118 38.293 0.50115.73 C
ATOM 12 O2' G A 4 23.353 95.317 38.447 0.50116.00 O
ATOM 13 C1' G A 4 20.952 95.281 38.663 0.50115.77 C
ATOM 14 N9 G A 4 19.812 95.497 37.768 0.50115.24 N
ATOM 15 C8 G A 4 18.773 96.390 37.935 0.50115.40 C
ATOM 16 N7 G A 4 17.917 96.360 36.940 0.50115.55 N
ATOM 17 C5 G A 4 18.413 95.391 36.077 0.50115.49 C
ATOM 18 C6 G A 4 17.915 94.918 34.810 0.50115.23 C
ATOM 19 O6 G A 4 16.904 95.277 34.195 0.50115.40 O
ATOM 20 N1 G A 4 18.741 93.932 34.264 0.50114.87 N
ATOM 21 C2 G A 4 19.888 93.452 34.849 0.50114.99 C
ATOM 22 N2 G A 4 20.560 92.505 34.160 0.50114.69 N
ATOM 23 N3 G A 4 20.359 93.871 36.032 0.50115.26 N
ATOM 24 C4 G A 4 19.576 94.841 36.576 0.50115.33 C
ATOM 25 P A A 5 23.455 99.428 40.059 0.50111.71 P
ATOM 26 OP1 A A 5 23.322 99.498 41.556 0.50111.00 O
ATOM 27 OP2 A A 5 22.475 100.205 39.202 0.50110.99 O
ATOM 28 O5' A A 5 24.951 99.889 39.722 0.50109.57 O
TER

ATOM 1 O3' C B 13 15.963 92.029 24.556 0.50128.28 O
ATOM 2 P C B 14 15.413 91.123 25.773 0.50129.45 P
ATOM 3 OP1 C B 14 15.028 89.782 25.200 0.50129.36 O
ATOM 4 OP2 C B 14 14.375 91.973 26.481 0.50128.77 O
ATOM 5 O5' C B 14 16.670 90.930 26.761 0.50127.58 O
ATOM 6 C5' C B 14 17.871 90.244 26.309 0.50124.17 C
ATOM 7 C4' C B 14 18.974 90.315 27.354 0.50121.78 C
ATOM 8 O4' C B 14 19.298 91.706 27.651 0.50119.80 O
ATOM 9 C3' C B 14 18.676 89.685 28.714 0.50121.03 C
ATOM 10 O3' C B 14 18.898 88.268 28.713 0.50120.88 O
ATOM 11 C2' C B 14 19.637 90.428 29.650 0.50119.40 C
ATOM 12 O2' C B 14 20.957 89.905 29.691 0.50119.53 O
ATOM 13 C1' C B 14 19.668 91.827 29.021 0.50117.76 C
ATOM 14 N1 C B 14 18.704 92.702 29.693 0.50114.44 N
ATOM 15 C2 C B 14 18.861 92.939 31.075 0.50112.95 C
ATOM 16 O2 C B 14 19.830 92.424 31.674 0.50112.08 O
ATOM 17 N3 C B 14 17.957 93.714 31.720 0.50112.40 N
ATOM 18 C4 C B 14 16.937 94.251 31.039 0.50112.32 C
ATOM 19 N4 C B 14 16.060 95.000 31.700 0.50112.45 N
ATOM 20 C5 C B 14 16.767 94.041 29.633 0.50112.38 C
ATOM 21 C6 C B 14 17.668 93.269 29.008 0.50113.07 C
ATOM 22 P A B 15 17.714 87.276 29.194 0.50120.78 P
ATOM 23 OP1 A B 15 17.902 85.943 28.502 0.50120.47 O
ATOM 24 OP2 A B 15 16.405 88.019 29.036 0.50119.68 O
ATOM 25 O5' A B 15 17.989 87.073 30.757 0.50119.57 O
TER

Atoms:
OP1: (19.633,100.112,42.537)
OP2: (17.904,100.076,40.573)
C3': (22.103,97.278,39.296)
C1': (20.952,95.281,38.663)
C5': (20.745,97.549,41.477)
O6: (16.904,95.277,34.195)
O4': (20.566,95.620,39.986)
C8: (18.773,96.390,37.935)
C2: (19.888,93.452,34.849)
C6: (17.915,94.918,34.810)
C5: (18.413,95.391,36.077)
C4: (19.576,94.841,36.576)
P: (18.759,99.326,41.570)
C4': (21.479,96.623,40.521)
C2': (22.191,96.118,38.293)
O2': (23.353,95.317,38.447)
N1: (18.741,93.932,34.264)
N2: (20.560,92.505,34.160)
N3: (20.359,93.871,36.032)
N7: (17.917,96.360,36.940)
N9: (19.812,95.497,37.768)
O5': (19.737,98.333,40.767)
O3': (23.381,97.867,39.603)
C2: (18.861,92.939,31.075)
OP1: (15.028,89.782,25.200)
OP2: (14.375,91.973,26.481)
C4: (16.937,94.251,31.039)
O5': (16.670,90.930,26.761)
C3': (18.676,89.685,28.714)
C1': (19.668,91.827,29.021)
O4': (19.298,91.706,27.651)
C5': (17.871,90.244,26.309)
P: (15.413,91.123,25.773)
O2: (19.830,92.424,31.674)
C4': (18.974,90.315,27.354)
C2': (19.637,90.428,29.650)
O2': (20.957,89.905,29.691)
N1: (18.704,92.702,29.693)
N3: (17.957,93.714,31.720)
N4: (16.060,95.000,31.700)
C6: (17.668,93.269,29.008)
C5: (16.767,94.041,29.633)
O3': (18.898,88.268,28.713)
Image (generated by PyMOL):
PyMOL image
show in jmol