ClaRNA

Doublet info:

Details

Nucleotide types: GC
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 2HOO:A67:A54

Extra

PDB:
ATOM 1 O3' A A 66 -4.993 28.636 53.938 1.00104.13 O
ATOM 2 P G A 67 -5.634 27.225 54.341 1.00109.53 P
ATOM 3 OP1 G A 67 -6.628 27.412 55.430 1.00108.43 O
ATOM 4 OP2 G A 67 -4.504 26.275 54.527 1.00108.74 O
ATOM 5 O5' G A 67 -6.410 26.785 53.022 1.00113.31 O
ATOM 6 C5' G A 67 -7.695 27.317 52.712 1.00115.79 C
ATOM 7 C4' G A 67 -8.410 26.397 51.750 1.00116.86 C
ATOM 8 O4' G A 67 -7.630 26.313 50.528 1.00116.61 O
ATOM 9 C3' G A 67 -8.545 24.951 52.215 1.00115.60 C
ATOM 10 O3' G A 67 -9.712 24.767 53.011 1.00115.45 O
ATOM 11 C2' G A 67 -8.643 24.178 50.903 1.00114.72 C
ATOM 12 O2' G A 67 -9.947 24.077 50.376 1.00115.78 O
ATOM 13 C1' G A 67 -7.753 25.013 49.981 1.00115.47 C
ATOM 14 N9 G A 67 -6.428 24.426 49.876 1.00113.75 N
ATOM 15 C8 G A 67 -5.255 24.854 50.450 1.00112.46 C
ATOM 16 N7 G A 67 -4.240 24.082 50.171 1.00111.56 N
ATOM 17 C5 G A 67 -4.783 23.091 49.364 1.00113.11 C
ATOM 18 C6 G A 67 -4.176 21.969 48.748 1.00113.41 C
ATOM 19 O6 G A 67 -2.994 21.609 48.796 1.00111.78 O
ATOM 20 N1 G A 67 -5.101 21.229 48.012 1.00115.03 N
ATOM 21 C2 G A 67 -6.440 21.531 47.886 1.00114.00 C
ATOM 22 N2 G A 67 -7.174 20.701 47.127 1.00112.33 N
ATOM 23 N3 G A 67 -7.014 22.570 48.460 1.00111.53 N
ATOM 24 C4 G A 67 -6.132 23.299 49.175 1.00113.05 C
ATOM 25 P C A 68 -9.728 23.636 54.157 1.00118.36 P
ATOM 26 OP1 C A 68 -11.050 23.672 54.846 1.00117.42 O
ATOM 27 OP2 C A 68 -8.481 23.823 54.948 1.00117.03 O
ATOM 28 O5' C A 68 -9.636 22.257 53.356 1.00116.30 O
TER

ATOM 1 O3' U B 53 -1.585 16.514 37.998 1.00113.66 O
ATOM 2 P C B 54 -2.143 17.797 38.801 1.00118.05 P
ATOM 3 OP1 C B 54 -1.962 19.000 37.944 1.00118.67 O
ATOM 4 OP2 C B 54 -1.530 17.763 40.155 1.00115.49 O
ATOM 5 O5' C B 54 -3.714 17.544 38.926 1.00115.62 O
ATOM 6 C5' C B 54 -4.263 16.930 40.082 1.00113.40 C
ATOM 7 C4' C B 54 -5.728 17.263 40.211 1.00113.47 C
ATOM 8 O4' C B 54 -6.201 16.686 41.461 1.00114.70 O
ATOM 9 C3' C B 54 -6.036 18.750 40.321 1.00114.32 C
ATOM 10 O3' C B 54 -6.262 19.347 39.047 1.00115.32 O
ATOM 11 C2' C B 54 -7.287 18.756 41.187 1.00114.66 C
ATOM 12 O2' C B 54 -8.458 18.449 40.455 1.00115.32 O
ATOM 13 C1' C B 54 -6.948 17.647 42.188 1.00114.53 C
ATOM 14 N1 C B 54 -6.087 18.141 43.284 1.00115.81 N
ATOM 15 C2 C B 54 -6.683 18.734 44.432 1.00116.43 C
ATOM 16 O2 C B 54 -7.931 18.779 44.524 1.00116.79 O
ATOM 17 N3 C B 54 -5.876 19.238 45.400 1.00112.66 N
ATOM 18 C4 C B 54 -4.544 19.166 45.267 1.00112.02 C
ATOM 19 N4 C B 54 -3.787 19.693 46.235 1.00113.22 N
ATOM 20 C5 C B 54 -3.925 18.553 44.134 1.00109.59 C
ATOM 21 C6 C B 54 -4.722 18.055 43.184 1.00110.91 C
ATOM 22 P U B 55 -5.946 20.910 38.832 1.00115.75 P
ATOM 23 OP1 U B 55 -6.375 21.300 37.470 1.00116.40 O
ATOM 24 OP2 U B 55 -4.542 21.146 39.256 1.00115.09 O
ATOM 25 O5' U B 55 -6.894 21.647 39.877 1.00117.73 O
TER

Atoms:
OP1: (-6.628,27.412,55.430)
OP2: (-4.504,26.275,54.527)
C3': (-8.545,24.951,52.215)
C1': (-7.753,25.013,49.981)
C5': (-7.695,27.317,52.712)
O6: (-2.994,21.609,48.796)
O4': (-7.630,26.313,50.528)
C8: (-5.255,24.854,50.450)
C2: (-6.440,21.531,47.886)
C6: (-4.176,21.969,48.748)
C5: (-4.783,23.091,49.364)
C4: (-6.132,23.299,49.175)
P: (-5.634,27.225,54.341)
C4': (-8.410,26.397,51.750)
C2': (-8.643,24.178,50.903)
O2': (-9.947,24.077,50.376)
N1: (-5.101,21.229,48.012)
N2: (-7.174,20.701,47.127)
N3: (-7.014,22.570,48.460)
N7: (-4.240,24.082,50.171)
N9: (-6.428,24.426,49.876)
O5': (-6.410,26.785,53.022)
O3': (-9.712,24.767,53.011)
C2: (-6.683,18.734,44.432)
OP1: (-1.962,19.000,37.944)
OP2: (-1.530,17.763,40.155)
C4: (-4.544,19.166,45.267)
O5': (-3.714,17.544,38.926)
C3': (-6.036,18.750,40.321)
C1': (-6.948,17.647,42.188)
O4': (-6.201,16.686,41.461)
C5': (-4.263,16.930,40.082)
P: (-2.143,17.797,38.801)
O2: (-7.931,18.779,44.524)
C4': (-5.728,17.263,40.211)
C2': (-7.287,18.756,41.187)
O2': (-8.458,18.449,40.455)
N1: (-6.087,18.141,43.284)
N3: (-5.876,19.238,45.400)
N4: (-3.787,19.693,46.235)
C6: (-4.722,18.055,43.184)
C5: (-3.925,18.553,44.134)
O3': (-6.262,19.347,39.047)
Image (generated by PyMOL):
PyMOL image
show in jmol