Doublet info:
Details
Nucleotide types:
UA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12417:12456
Extra
PDB:
ATOM 1 O3' C A2416 7.436 -75.256 34.951 1.00 60.42 O
ATOM 2 P U A2417 7.829 -74.443 33.611 1.00 59.08 P
ATOM 3 OP1 U A2417 6.718 -74.616 32.657 1.00 59.57 O
ATOM 4 OP2 U A2417 9.200 -74.877 33.191 1.00 59.15 O
ATOM 5 O5' U A2417 7.856 -72.945 34.112 1.00 58.34 O
ATOM 6 C5' U A2417 6.752 -72.394 34.805 1.00 58.13 C
ATOM 7 C4' U A2417 6.937 -70.922 35.038 1.00 57.46 C
ATOM 8 O4' U A2417 8.092 -70.707 35.897 1.00 56.99 O
ATOM 9 C3' U A2417 7.202 -70.100 33.781 1.00 57.41 C
ATOM 10 O3' U A2417 6.771 -68.765 34.014 1.00 56.91 O
ATOM 11 C2' U A2417 8.716 -70.108 33.724 1.00 57.18 C
ATOM 12 O2' U A2417 9.274 -69.088 32.919 1.00 56.91 O
ATOM 13 C1' U A2417 9.045 -69.926 35.210 1.00 56.70 C
ATOM 14 N1 U A2417 10.362 -70.403 35.606 1.00 56.59 N
ATOM 15 C2 U A2417 11.245 -69.516 36.194 1.00 55.99 C
ATOM 16 O2 U A2417 10.982 -68.337 36.387 1.00 55.54 O
ATOM 17 N3 U A2417 12.437 -70.073 36.561 1.00 55.95 N
ATOM 18 C4 U A2417 12.800 -71.388 36.390 1.00 56.45 C
ATOM 19 O4 U A2417 13.902 -71.770 36.769 1.00 56.37 O
ATOM 20 C5 U A2417 11.814 -72.231 35.789 1.00 57.06 C
ATOM 21 C6 U A2417 10.641 -71.725 35.448 1.00 57.11 C
ATOM 22 P C A2418 5.236 -68.345 33.850 1.00 58.11 P
ATOM 23 OP1 C A2418 4.405 -69.444 34.405 1.00 58.53 O
ATOM 24 OP2 C A2418 5.070 -67.942 32.428 1.00 58.35 O
ATOM 25 O5' C A2418 5.110 -67.070 34.781 1.00 57.43 O
TER
ATOM 1 O3' A B2455 16.924 -74.058 37.682 1.00 51.41 O
ATOM 2 P A B2456 18.148 -73.949 38.696 1.00 55.58 P
ATOM 3 OP1 A B2456 18.844 -75.248 38.688 1.00 56.05 O
ATOM 4 OP2 A B2456 17.601 -73.434 39.975 1.00 55.17 O
ATOM 5 O5' A B2456 19.091 -72.884 38.038 1.00 55.19 O
ATOM 6 C5' A B2456 18.658 -71.575 37.805 1.00 54.76 C
ATOM 7 C4' A B2456 19.448 -70.572 38.573 1.00 54.12 C
ATOM 8 O4' A B2456 18.952 -69.288 38.148 1.00 53.77 O
ATOM 9 C3' A B2456 19.210 -70.615 40.082 1.00 53.86 C
ATOM 10 O3' A B2456 20.240 -69.878 40.772 1.00 53.33 O
ATOM 11 C2' A B2456 17.886 -69.876 40.157 1.00 53.70 C
ATOM 12 O2' A B2456 17.526 -69.388 41.421 1.00 53.30 O
ATOM 13 C1' A B2456 18.095 -68.757 39.137 1.00 53.45 C
ATOM 14 N9 A B2456 16.844 -68.349 38.511 1.00 53.57 N
ATOM 15 C8 A B2456 15.887 -69.193 38.046 1.00 54.10 C
ATOM 16 N7 A B2456 14.797 -68.586 37.637 1.00 54.10 N
ATOM 17 C5 A B2456 15.018 -67.252 37.887 1.00 53.52 C
ATOM 18 C6 A B2456 14.230 -66.102 37.694 1.00 53.24 C
ATOM 19 N6 A B2456 13.000 -66.009 37.169 1.00 53.49 N
ATOM 20 N1 A B2456 14.796 -64.958 38.061 1.00 52.68 N
ATOM 21 C2 A B2456 16.024 -64.973 38.577 1.00 52.43 C
ATOM 22 N3 A B2456 16.846 -65.975 38.827 1.00 52.64 N
ATOM 23 C4 A B2456 16.275 -67.106 38.442 1.00 53.19 C
ATOM 24 P A B2457 20.337 -69.830 42.400 1.00 48.28 P
ATOM 25 OP1 A B2457 21.768 -69.769 42.741 1.00 48.06 O
ATOM 26 OP2 A B2457 19.565 -70.921 42.940 1.00 48.68 O
ATOM 27 O5' A B2457 19.646 -68.445 42.779 1.00 47.76 O
TER
ATOM 2 P U A2417 7.829 -74.443 33.611 1.00 59.08 P
ATOM 3 OP1 U A2417 6.718 -74.616 32.657 1.00 59.57 O
ATOM 4 OP2 U A2417 9.200 -74.877 33.191 1.00 59.15 O
ATOM 5 O5' U A2417 7.856 -72.945 34.112 1.00 58.34 O
ATOM 6 C5' U A2417 6.752 -72.394 34.805 1.00 58.13 C
ATOM 7 C4' U A2417 6.937 -70.922 35.038 1.00 57.46 C
ATOM 8 O4' U A2417 8.092 -70.707 35.897 1.00 56.99 O
ATOM 9 C3' U A2417 7.202 -70.100 33.781 1.00 57.41 C
ATOM 10 O3' U A2417 6.771 -68.765 34.014 1.00 56.91 O
ATOM 11 C2' U A2417 8.716 -70.108 33.724 1.00 57.18 C
ATOM 12 O2' U A2417 9.274 -69.088 32.919 1.00 56.91 O
ATOM 13 C1' U A2417 9.045 -69.926 35.210 1.00 56.70 C
ATOM 14 N1 U A2417 10.362 -70.403 35.606 1.00 56.59 N
ATOM 15 C2 U A2417 11.245 -69.516 36.194 1.00 55.99 C
ATOM 16 O2 U A2417 10.982 -68.337 36.387 1.00 55.54 O
ATOM 17 N3 U A2417 12.437 -70.073 36.561 1.00 55.95 N
ATOM 18 C4 U A2417 12.800 -71.388 36.390 1.00 56.45 C
ATOM 19 O4 U A2417 13.902 -71.770 36.769 1.00 56.37 O
ATOM 20 C5 U A2417 11.814 -72.231 35.789 1.00 57.06 C
ATOM 21 C6 U A2417 10.641 -71.725 35.448 1.00 57.11 C
ATOM 22 P C A2418 5.236 -68.345 33.850 1.00 58.11 P
ATOM 23 OP1 C A2418 4.405 -69.444 34.405 1.00 58.53 O
ATOM 24 OP2 C A2418 5.070 -67.942 32.428 1.00 58.35 O
ATOM 25 O5' C A2418 5.110 -67.070 34.781 1.00 57.43 O
TER
ATOM 1 O3' A B2455 16.924 -74.058 37.682 1.00 51.41 O
ATOM 2 P A B2456 18.148 -73.949 38.696 1.00 55.58 P
ATOM 3 OP1 A B2456 18.844 -75.248 38.688 1.00 56.05 O
ATOM 4 OP2 A B2456 17.601 -73.434 39.975 1.00 55.17 O
ATOM 5 O5' A B2456 19.091 -72.884 38.038 1.00 55.19 O
ATOM 6 C5' A B2456 18.658 -71.575 37.805 1.00 54.76 C
ATOM 7 C4' A B2456 19.448 -70.572 38.573 1.00 54.12 C
ATOM 8 O4' A B2456 18.952 -69.288 38.148 1.00 53.77 O
ATOM 9 C3' A B2456 19.210 -70.615 40.082 1.00 53.86 C
ATOM 10 O3' A B2456 20.240 -69.878 40.772 1.00 53.33 O
ATOM 11 C2' A B2456 17.886 -69.876 40.157 1.00 53.70 C
ATOM 12 O2' A B2456 17.526 -69.388 41.421 1.00 53.30 O
ATOM 13 C1' A B2456 18.095 -68.757 39.137 1.00 53.45 C
ATOM 14 N9 A B2456 16.844 -68.349 38.511 1.00 53.57 N
ATOM 15 C8 A B2456 15.887 -69.193 38.046 1.00 54.10 C
ATOM 16 N7 A B2456 14.797 -68.586 37.637 1.00 54.10 N
ATOM 17 C5 A B2456 15.018 -67.252 37.887 1.00 53.52 C
ATOM 18 C6 A B2456 14.230 -66.102 37.694 1.00 53.24 C
ATOM 19 N6 A B2456 13.000 -66.009 37.169 1.00 53.49 N
ATOM 20 N1 A B2456 14.796 -64.958 38.061 1.00 52.68 N
ATOM 21 C2 A B2456 16.024 -64.973 38.577 1.00 52.43 C
ATOM 22 N3 A B2456 16.846 -65.975 38.827 1.00 52.64 N
ATOM 23 C4 A B2456 16.275 -67.106 38.442 1.00 53.19 C
ATOM 24 P A B2457 20.337 -69.830 42.400 1.00 48.28 P
ATOM 25 OP1 A B2457 21.768 -69.769 42.741 1.00 48.06 O
ATOM 26 OP2 A B2457 19.565 -70.921 42.940 1.00 48.68 O
ATOM 27 O5' A B2457 19.646 -68.445 42.779 1.00 47.76 O
TER
Atoms:
C4: (12.800,-71.388,36.390)
N3: (12.437,-70.073,36.561)
OP1: (6.718,-74.616,32.657)
OP2: (9.200,-74.877,33.191)
C2: (11.245,-69.516,36.194)
C1': (9.045,-69.926,35.210)
C3': (7.202,-70.100,33.781)
O5': (7.856,-72.945,34.112)
O4': (8.092,-70.707,35.897)
C5': (6.752,-72.394,34.805)
P: (7.829,-74.443,33.611)
C4': (6.937,-70.922,35.038)
C2': (8.716,-70.108,33.724)
O2': (9.274,-69.088,32.919)
N1: (10.362,-70.403,35.606)
O4: (13.902,-71.770,36.769)
O2: (10.982,-68.337,36.387)
C6: (10.641,-71.725,35.448)
C5: (11.814,-72.231,35.789)
O3': (6.771,-68.765,34.014)
N3: (12.437,-70.073,36.561)
OP1: (6.718,-74.616,32.657)
OP2: (9.200,-74.877,33.191)
C2: (11.245,-69.516,36.194)
C1': (9.045,-69.926,35.210)
C3': (7.202,-70.100,33.781)
O5': (7.856,-72.945,34.112)
O4': (8.092,-70.707,35.897)
C5': (6.752,-72.394,34.805)
P: (7.829,-74.443,33.611)
C4': (6.937,-70.922,35.038)
C2': (8.716,-70.108,33.724)
O2': (9.274,-69.088,32.919)
N1: (10.362,-70.403,35.606)
O4: (13.902,-71.770,36.769)
O2: (10.982,-68.337,36.387)
C6: (10.641,-71.725,35.448)
C5: (11.814,-72.231,35.789)
O3': (6.771,-68.765,34.014)
OP1: (18.844,-75.248,38.688)
OP2: (17.601,-73.434,39.975)
C3': (19.210,-70.615,40.082)
C1': (18.095,-68.757,39.137)
C5': (18.658,-71.575,37.805)
O4': (18.952,-69.288,38.148)
C8: (15.887,-69.193,38.046)
O2': (17.526,-69.388,41.421)
C6: (14.230,-66.102,37.694)
C5: (15.018,-67.252,37.887)
C4: (16.275,-67.106,38.442)
P: (18.148,-73.949,38.696)
C4': (19.448,-70.572,38.573)
C2': (17.886,-69.876,40.157)
C2: (16.024,-64.973,38.577)
N1: (14.796,-64.958,38.061)
N3: (16.846,-65.975,38.827)
N6: (13.000,-66.009,37.169)
N7: (14.797,-68.586,37.637)
N9: (16.844,-68.349,38.511)
O5': (19.091,-72.884,38.038)
O3': (20.240,-69.878,40.772)
OP2: (17.601,-73.434,39.975)
C3': (19.210,-70.615,40.082)
C1': (18.095,-68.757,39.137)
C5': (18.658,-71.575,37.805)
O4': (18.952,-69.288,38.148)
C8: (15.887,-69.193,38.046)
O2': (17.526,-69.388,41.421)
C6: (14.230,-66.102,37.694)
C5: (15.018,-67.252,37.887)
C4: (16.275,-67.106,38.442)
P: (18.148,-73.949,38.696)
C4': (19.448,-70.572,38.573)
C2': (17.886,-69.876,40.157)
C2: (16.024,-64.973,38.577)
N1: (14.796,-64.958,38.061)
N3: (16.846,-65.975,38.827)
N6: (13.000,-66.009,37.169)
N7: (14.797,-68.586,37.637)
N9: (16.844,-68.349,38.511)
O5': (19.091,-72.884,38.038)
O3': (20.240,-69.878,40.772)
Image (generated by PyMOL):