Doublet info:
Details
Nucleotide types:
UA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1VBY:B9:B8
Extra
PDB:
ATOM 1 O3' A A 8 -28.301 72.246 -0.980 1.00105.43 O
ATOM 2 P U A 9 -28.088 73.646 -0.220 1.00104.53 P
ATOM 3 OP1 U A 9 -29.347 74.430 -0.295 1.00104.66 O
ATOM 4 OP2 U A 9 -26.819 74.226 -0.731 1.00103.26 O
ATOM 5 O5' U A 9 -27.857 73.228 1.299 1.00104.67 O
ATOM 6 C5' U A 9 -28.873 72.544 2.037 1.00103.87 C
ATOM 7 C4' U A 9 -28.400 72.281 3.447 1.00103.36 C
ATOM 8 O4' U A 9 -27.284 71.353 3.414 1.00103.10 O
ATOM 9 C3' U A 9 -27.852 73.503 4.167 1.00103.43 C
ATOM 10 O3' U A 9 -28.880 74.270 4.778 1.00102.99 O
ATOM 11 C2' U A 9 -26.889 72.903 5.185 1.00103.33 C
ATOM 12 O2' U A 9 -27.524 72.472 6.373 1.00103.52 O
ATOM 13 C1' U A 9 -26.344 71.697 4.418 1.00102.32 C
ATOM 14 N1 U A 9 -25.057 71.983 3.774 1.00100.16 N
ATOM 15 C2 U A 9 -23.926 71.887 4.555 1.00 99.43 C
ATOM 16 O2 U A 9 -23.964 71.579 5.729 1.00 99.10 O
ATOM 17 N3 U A 9 -22.749 72.169 3.912 1.00 99.59 N
ATOM 18 C4 U A 9 -22.592 72.529 2.593 1.00 99.90 C
ATOM 19 O4 U A 9 -21.458 72.752 2.158 1.00100.04 O
ATOM 20 C5 U A 9 -23.815 72.605 1.847 1.00 99.49 C
ATOM 21 C6 U A 9 -24.976 72.335 2.450 1.00 99.23 C
ATOM 22 P G A 10 -28.845 75.870 4.655 1.00102.68 P
ATOM 23 OP1 G A 10 -30.115 76.304 4.017 1.00102.04 O
ATOM 24 OP2 G A 10 -27.545 76.257 4.045 1.00101.27 O
ATOM 25 O5' G A 10 -28.832 76.364 6.168 1.00102.48 O
TER
ATOM 1 O3' C B 7 -24.045 70.999 -5.182 1.00110.86 O
ATOM 2 P A B 8 -24.182 72.223 -4.151 1.00110.79 P
ATOM 3 OP1 A B 8 -24.797 73.380 -4.853 1.00110.82 O
ATOM 4 OP2 A B 8 -22.867 72.384 -3.473 1.00111.17 O
ATOM 5 O5' A B 8 -25.216 71.687 -3.069 1.00109.69 O
ATOM 6 C5' A B 8 -26.500 71.222 -3.463 1.00107.71 C
ATOM 7 C4' A B 8 -27.172 70.522 -2.310 1.00106.17 C
ATOM 8 O4' A B 8 -26.421 69.331 -1.963 1.00105.26 O
ATOM 9 C3' A B 8 -27.235 71.309 -1.013 1.00105.39 C
ATOM 10 O3' A B 8 -28.301 72.246 -0.980 1.00105.43 O
ATOM 11 C2' A B 8 -27.368 70.211 0.032 1.00104.42 C
ATOM 12 O2' A B 8 -28.688 69.723 0.154 1.00104.14 O
ATOM 13 C1' A B 8 -26.474 69.124 -0.560 1.00103.55 C
ATOM 14 N9 A B 8 -25.116 69.227 -0.035 1.00101.63 N
ATOM 15 C8 A B 8 -23.970 69.584 -0.705 1.00100.71 C
ATOM 16 N7 A B 8 -22.899 69.603 0.052 1.00100.22 N
ATOM 17 C5 A B 8 -23.370 69.231 1.305 1.00 99.53 C
ATOM 18 C6 A B 8 -22.728 69.064 2.548 1.00 97.95 C
ATOM 19 N6 A B 8 -21.421 69.260 2.739 1.00 96.33 N
ATOM 20 N1 A B 8 -23.488 68.684 3.600 1.00 96.99 N
ATOM 21 C2 A B 8 -24.801 68.490 3.406 1.00 97.56 C
ATOM 22 N3 A B 8 -25.519 68.616 2.291 1.00 98.10 N
ATOM 23 C4 A B 8 -24.734 68.993 1.265 1.00100.15 C
ATOM 24 P U B 9 -28.088 73.646 -0.220 1.00104.53 P
ATOM 25 OP1 U B 9 -29.347 74.430 -0.295 1.00104.66 O
ATOM 26 OP2 U B 9 -26.819 74.226 -0.731 1.00103.26 O
ATOM 27 O5' U B 9 -27.857 73.228 1.299 1.00104.67 O
TER
ATOM 2 P U A 9 -28.088 73.646 -0.220 1.00104.53 P
ATOM 3 OP1 U A 9 -29.347 74.430 -0.295 1.00104.66 O
ATOM 4 OP2 U A 9 -26.819 74.226 -0.731 1.00103.26 O
ATOM 5 O5' U A 9 -27.857 73.228 1.299 1.00104.67 O
ATOM 6 C5' U A 9 -28.873 72.544 2.037 1.00103.87 C
ATOM 7 C4' U A 9 -28.400 72.281 3.447 1.00103.36 C
ATOM 8 O4' U A 9 -27.284 71.353 3.414 1.00103.10 O
ATOM 9 C3' U A 9 -27.852 73.503 4.167 1.00103.43 C
ATOM 10 O3' U A 9 -28.880 74.270 4.778 1.00102.99 O
ATOM 11 C2' U A 9 -26.889 72.903 5.185 1.00103.33 C
ATOM 12 O2' U A 9 -27.524 72.472 6.373 1.00103.52 O
ATOM 13 C1' U A 9 -26.344 71.697 4.418 1.00102.32 C
ATOM 14 N1 U A 9 -25.057 71.983 3.774 1.00100.16 N
ATOM 15 C2 U A 9 -23.926 71.887 4.555 1.00 99.43 C
ATOM 16 O2 U A 9 -23.964 71.579 5.729 1.00 99.10 O
ATOM 17 N3 U A 9 -22.749 72.169 3.912 1.00 99.59 N
ATOM 18 C4 U A 9 -22.592 72.529 2.593 1.00 99.90 C
ATOM 19 O4 U A 9 -21.458 72.752 2.158 1.00100.04 O
ATOM 20 C5 U A 9 -23.815 72.605 1.847 1.00 99.49 C
ATOM 21 C6 U A 9 -24.976 72.335 2.450 1.00 99.23 C
ATOM 22 P G A 10 -28.845 75.870 4.655 1.00102.68 P
ATOM 23 OP1 G A 10 -30.115 76.304 4.017 1.00102.04 O
ATOM 24 OP2 G A 10 -27.545 76.257 4.045 1.00101.27 O
ATOM 25 O5' G A 10 -28.832 76.364 6.168 1.00102.48 O
TER
ATOM 1 O3' C B 7 -24.045 70.999 -5.182 1.00110.86 O
ATOM 2 P A B 8 -24.182 72.223 -4.151 1.00110.79 P
ATOM 3 OP1 A B 8 -24.797 73.380 -4.853 1.00110.82 O
ATOM 4 OP2 A B 8 -22.867 72.384 -3.473 1.00111.17 O
ATOM 5 O5' A B 8 -25.216 71.687 -3.069 1.00109.69 O
ATOM 6 C5' A B 8 -26.500 71.222 -3.463 1.00107.71 C
ATOM 7 C4' A B 8 -27.172 70.522 -2.310 1.00106.17 C
ATOM 8 O4' A B 8 -26.421 69.331 -1.963 1.00105.26 O
ATOM 9 C3' A B 8 -27.235 71.309 -1.013 1.00105.39 C
ATOM 10 O3' A B 8 -28.301 72.246 -0.980 1.00105.43 O
ATOM 11 C2' A B 8 -27.368 70.211 0.032 1.00104.42 C
ATOM 12 O2' A B 8 -28.688 69.723 0.154 1.00104.14 O
ATOM 13 C1' A B 8 -26.474 69.124 -0.560 1.00103.55 C
ATOM 14 N9 A B 8 -25.116 69.227 -0.035 1.00101.63 N
ATOM 15 C8 A B 8 -23.970 69.584 -0.705 1.00100.71 C
ATOM 16 N7 A B 8 -22.899 69.603 0.052 1.00100.22 N
ATOM 17 C5 A B 8 -23.370 69.231 1.305 1.00 99.53 C
ATOM 18 C6 A B 8 -22.728 69.064 2.548 1.00 97.95 C
ATOM 19 N6 A B 8 -21.421 69.260 2.739 1.00 96.33 N
ATOM 20 N1 A B 8 -23.488 68.684 3.600 1.00 96.99 N
ATOM 21 C2 A B 8 -24.801 68.490 3.406 1.00 97.56 C
ATOM 22 N3 A B 8 -25.519 68.616 2.291 1.00 98.10 N
ATOM 23 C4 A B 8 -24.734 68.993 1.265 1.00100.15 C
ATOM 24 P U B 9 -28.088 73.646 -0.220 1.00104.53 P
ATOM 25 OP1 U B 9 -29.347 74.430 -0.295 1.00104.66 O
ATOM 26 OP2 U B 9 -26.819 74.226 -0.731 1.00103.26 O
ATOM 27 O5' U B 9 -27.857 73.228 1.299 1.00104.67 O
TER
Atoms:
C4: (-22.592,72.529,2.593)
N3: (-22.749,72.169,3.912)
OP1: (-29.347,74.430,-0.295)
OP2: (-26.819,74.226,-0.731)
C2: (-23.926,71.887,4.555)
C1': (-26.344,71.697,4.418)
C3': (-27.852,73.503,4.167)
O5': (-27.857,73.228,1.299)
O4': (-27.284,71.353,3.414)
C5': (-28.873,72.544,2.037)
P: (-28.088,73.646,-0.220)
C4': (-28.400,72.281,3.447)
C2': (-26.889,72.903,5.185)
O2': (-27.524,72.472,6.373)
N1: (-25.057,71.983,3.774)
O4: (-21.458,72.752,2.158)
O2: (-23.964,71.579,5.729)
C6: (-24.976,72.335,2.450)
C5: (-23.815,72.605,1.847)
O3': (-28.880,74.270,4.778)
N3: (-22.749,72.169,3.912)
OP1: (-29.347,74.430,-0.295)
OP2: (-26.819,74.226,-0.731)
C2: (-23.926,71.887,4.555)
C1': (-26.344,71.697,4.418)
C3': (-27.852,73.503,4.167)
O5': (-27.857,73.228,1.299)
O4': (-27.284,71.353,3.414)
C5': (-28.873,72.544,2.037)
P: (-28.088,73.646,-0.220)
C4': (-28.400,72.281,3.447)
C2': (-26.889,72.903,5.185)
O2': (-27.524,72.472,6.373)
N1: (-25.057,71.983,3.774)
O4: (-21.458,72.752,2.158)
O2: (-23.964,71.579,5.729)
C6: (-24.976,72.335,2.450)
C5: (-23.815,72.605,1.847)
O3': (-28.880,74.270,4.778)
OP1: (-24.797,73.380,-4.853)
OP2: (-22.867,72.384,-3.473)
C3': (-27.235,71.309,-1.013)
C1': (-26.474,69.124,-0.560)
C5': (-26.500,71.222,-3.463)
O4': (-26.421,69.331,-1.963)
C8: (-23.970,69.584,-0.705)
O2': (-28.688,69.723,0.154)
C6: (-22.728,69.064,2.548)
C5: (-23.370,69.231,1.305)
C4: (-24.734,68.993,1.265)
P: (-24.182,72.223,-4.151)
C4': (-27.172,70.522,-2.310)
C2': (-27.368,70.211,0.032)
C2: (-24.801,68.490,3.406)
N1: (-23.488,68.684,3.600)
N3: (-25.519,68.616,2.291)
N6: (-21.421,69.260,2.739)
N7: (-22.899,69.603,0.052)
N9: (-25.116,69.227,-0.035)
O5': (-25.216,71.687,-3.069)
O3': (-28.301,72.246,-0.980)
OP2: (-22.867,72.384,-3.473)
C3': (-27.235,71.309,-1.013)
C1': (-26.474,69.124,-0.560)
C5': (-26.500,71.222,-3.463)
O4': (-26.421,69.331,-1.963)
C8: (-23.970,69.584,-0.705)
O2': (-28.688,69.723,0.154)
C6: (-22.728,69.064,2.548)
C5: (-23.370,69.231,1.305)
C4: (-24.734,68.993,1.265)
P: (-24.182,72.223,-4.151)
C4': (-27.172,70.522,-2.310)
C2': (-27.368,70.211,0.032)
C2: (-24.801,68.490,3.406)
N1: (-23.488,68.684,3.600)
N3: (-25.519,68.616,2.291)
N6: (-21.421,69.260,2.739)
N7: (-22.899,69.603,0.052)
N9: (-25.116,69.227,-0.035)
O5': (-25.216,71.687,-3.069)
O3': (-28.301,72.246,-0.980)
Image (generated by PyMOL):